Wall clock time and date at job start Tue Mar 31 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 120.00050 * 2 1 4 4 H 1.48497 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47114 * 300.00030 * 3 2 1 6 6 H 1.48498 * 109.46850 * 60.00315 * 3 2 1 7 7 C 1.38812 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99804 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99644 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46704 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46714 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.46876 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99575 * 180.02562 * 13 12 11 15 15 O 1.21271 * 120.00199 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99381 * 180.02562 * 14 13 12 17 17 N 1.46502 * 109.46672 * 179.97438 * 16 14 13 18 18 C 1.35316 * 125.86606 * 125.32549 * 17 16 14 19 19 C 1.35351 * 106.17602 * 180.11468 * 18 17 16 20 20 C 1.50690 * 126.75202 * 179.85417 * 19 18 17 21 21 C 1.53000 * 117.50063 * 84.71586 * 20 19 18 22 22 C 1.53002 * 60.02940 * 252.49714 * 21 20 19 23 23 N 1.33773 * 106.49046 * 359.59343 * 19 18 17 24 24 N 1.28629 * 108.89215 * 0.26240 * 23 19 18 25 25 H 0.97000 * 119.99538 * 359.97438 * 1 2 3 26 26 H 0.96995 * 120.00189 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47190 * 60.00558 * 10 9 7 28 28 H 1.08997 * 109.47171 * 300.00034 * 10 9 7 29 29 H 1.08992 * 109.47165 * 60.00287 * 11 10 9 30 30 H 1.08997 * 109.47016 * 299.99739 * 11 10 9 31 31 H 1.09002 * 109.47123 * 60.00203 * 12 11 10 32 32 H 1.08996 * 109.47547 * 300.00122 * 12 11 10 33 33 H 0.96992 * 119.99857 * 0.02562 * 13 12 11 34 34 H 1.09002 * 109.47137 * 60.00101 * 16 14 13 35 35 H 1.08997 * 109.47070 * 299.99671 * 16 14 13 36 36 H 1.08005 * 126.90881 * 359.97438 * 18 17 16 37 37 H 1.09008 * 115.56062 * 230.40216 * 20 19 18 38 38 H 1.09002 * 117.49833 * 359.97438 * 21 20 19 39 39 H 1.09002 * 117.49953 * 144.99860 * 21 20 19 40 40 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 41 41 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.8287 -6.1447 -0.0018 13 7 0.8767 -7.2582 -0.0018 14 6 1.3260 -8.5289 -0.0018 15 8 2.5183 -8.7505 -0.0014 16 6 0.3466 -9.6744 -0.0024 17 7 1.0791 -10.9431 -0.0029 18 6 0.9264 -11.9471 0.8913 19 6 1.7938 -12.9177 0.5204 20 6 2.0074 -14.2446 1.2018 21 6 1.0670 -15.3914 0.8259 22 6 0.9367 -14.7122 2.1907 23 7 2.4200 -12.4695 -0.5735 24 7 1.9741 -11.2969 -0.8577 25 1 -0.4849 0.8401 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6846 -3.7146 0.8895 28 1 2.6847 -3.7145 -0.8905 29 1 0.4375 -4.7618 -0.8914 30 1 0.4368 -4.7621 0.8886 31 1 2.4553 -6.2029 0.8882 32 1 2.4554 -6.2020 -0.8917 33 1 -0.0769 -7.0810 -0.0018 34 1 -0.2797 -9.6165 -0.8927 35 1 -0.2804 -9.6168 0.8873 36 1 0.2501 -11.9686 1.7331 37 1 3.0440 -14.4967 1.4260 38 1 0.2934 -15.1859 0.0860 39 1 1.4848 -16.3979 0.8025 40 1 0.0777 -14.0600 2.3485 41 1 1.2692 -15.2717 3.0651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159831155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:46 Heat of formation + Delta-G solvation = 100.897715 kcal Electronic energy + Delta-G solvation = -21763.689578 eV Core-core repulsion = 18296.349799 eV Total energy + Delta-G solvation = -3467.339778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.54819 -39.96280 -37.68329 -36.24460 -34.71871 -34.50544 -32.14629 -31.00032 -30.12605 -28.68030 -25.30525 -24.42291 -23.26361 -22.77535 -22.02708 -21.38666 -21.02701 -20.32851 -18.05382 -17.81196 -17.03586 -16.35907 -16.14958 -15.96015 -15.67924 -14.99779 -14.86591 -14.76392 -14.55054 -13.89498 -13.38992 -13.34074 -13.07546 -12.70513 -12.41290 -11.99584 -11.83185 -11.76069 -11.47205 -11.17850 -11.05953 -10.99339 -10.86743 -10.72501 -10.71018 -10.53185 -10.11060 -9.97927 -9.75561 -9.30689 -9.30495 -8.93302 -6.98787 -5.82179 -3.11263 1.27146 1.82362 2.18097 2.26536 2.83606 3.36994 3.40692 3.46768 3.48858 3.81471 4.10030 4.21276 4.37972 4.41528 4.44832 4.52221 4.54600 4.83728 4.97458 4.99721 5.18949 5.19390 5.40088 5.44334 5.50358 5.52560 5.65913 5.73824 5.82390 5.85188 5.94900 6.08761 6.15025 6.23856 6.24117 6.71034 6.75093 7.12869 7.66621 7.82257 8.30859 8.36760 9.48204 10.04333 10.38965 11.40822 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.062183 B = 0.001853 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.172348 B =15106.714452 C =15237.818444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.137 4.137 12 C 0.123 3.877 13 N -0.720 5.720 14 C 0.498 3.502 15 O -0.509 6.509 16 C 0.096 3.904 17 N -0.281 5.281 18 C -0.049 4.049 19 C 0.010 3.990 20 C -0.071 4.071 21 C -0.165 4.165 22 C -0.170 4.170 23 N -0.264 5.264 24 N -0.050 5.050 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.403 0.597 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.189 0.811 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 -29.116 4.259 29.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.175 4.175 12 C 0.000 4.000 13 N -0.373 5.373 14 C 0.280 3.720 15 O -0.383 6.383 16 C -0.030 4.030 17 N -0.075 5.075 18 C -0.199 4.199 19 C -0.128 4.128 20 C -0.091 4.091 21 C -0.203 4.203 22 C -0.208 4.208 23 N -0.131 5.131 24 N -0.029 5.029 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.238 0.762 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.206 0.794 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.219 -28.690 2.984 29.024 hybrid contribution -1.105 1.033 1.002 1.815 sum -4.324 -27.657 3.986 28.275 Atomic orbital electron populations 1.69670 1.05145 1.25612 1.57867 1.24757 0.95569 0.97790 1.02905 0.86089 0.78836 0.83913 0.77207 1.20484 1.21803 1.21815 1.19300 0.91173 0.84089 1.42642 0.91000 1.42329 1.05842 0.99968 1.89647 1.20522 0.93245 0.85160 0.98322 1.21949 0.99619 0.93151 1.02819 1.21436 0.91555 0.84160 1.02848 1.45937 1.11106 1.05195 1.75060 1.20170 0.89614 0.84043 0.78151 1.90854 1.15941 1.84109 1.47421 1.21903 0.93783 0.79448 1.07851 1.46721 1.27523 1.13611 1.19617 1.23238 1.06828 0.89825 0.99992 1.20985 0.97919 0.97352 0.96506 1.20008 0.97488 0.89527 1.02111 1.23003 1.02042 0.96874 0.98336 1.23033 1.00330 1.03635 0.93788 1.75095 1.21591 1.02884 1.13554 1.78477 1.02181 1.08170 1.14099 0.93539 0.78310 0.96018 0.95965 0.91139 0.91197 0.91115 0.90956 0.76237 0.85139 0.84603 0.79360 0.85986 0.88690 0.88066 0.88603 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -18.24 5.60 -59.90 -0.34 -18.57 16 10 C 0.16 3.00 6.26 -4.04 -0.03 2.97 16 11 C -0.14 -1.92 5.44 -26.73 -0.15 -2.06 16 12 C 0.12 1.52 5.67 -4.04 -0.02 1.49 16 13 N -0.72 -6.62 5.56 -60.29 -0.33 -6.96 16 14 C 0.50 5.31 7.84 -10.98 -0.09 5.23 16 15 O -0.51 -8.26 15.68 5.57 0.09 -8.17 16 16 C 0.10 0.60 6.94 -5.19 -0.04 0.57 16 17 N -0.28 -2.90 3.20 -62.44 -0.20 -3.10 16 18 C -0.05 -0.42 10.89 -17.04 -0.19 -0.60 16 19 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 20 C -0.07 -0.55 6.33 -91.74 -0.58 -1.13 16 21 C -0.16 -0.97 10.23 -26.73 -0.27 -1.24 16 22 C -0.17 -0.82 10.03 -26.69 -0.27 -1.09 16 23 N -0.26 -3.82 12.41 33.28 0.41 -3.40 16 24 N -0.05 -0.72 12.13 60.35 0.73 0.01 16 25 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.38 9.86 7.67 -40.82 -0.31 9.55 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.40 2.34 8.47 -40.82 -0.35 1.99 16 34 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.14 0.26 8.07 -51.93 -0.42 -0.16 16 36 H 0.19 0.77 7.45 -52.48 -0.39 0.38 16 37 H 0.12 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.36 7.23 -51.93 -0.38 -0.01 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -38.02 355.11 -7.07 -45.08 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.04 Total: 3.40 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.44 Total: -3.72 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 1.00 Total: -59.21 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.02 -7.07 -45.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159831155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.979 kcal (2) G-P(sol) polarization free energy of solvation -38.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds