Wall clock time and date at job start Tue Mar 31 2020 03:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 120.00050 * 2 1 4 4 H 1.48497 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47114 * 300.00030 * 3 2 1 6 6 H 1.48498 * 109.46850 * 60.00315 * 3 2 1 7 7 C 1.38812 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99804 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99644 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46704 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46714 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.46876 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99575 * 180.02562 * 13 12 11 15 15 O 1.21271 * 120.00199 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99381 * 180.02562 * 14 13 12 17 17 N 1.46502 * 109.46672 * 179.97438 * 16 14 13 18 18 C 1.35316 * 125.86606 * 125.32549 * 17 16 14 19 19 C 1.35351 * 106.17602 * 180.11468 * 18 17 16 20 20 C 1.50690 * 126.75202 * 179.85417 * 19 18 17 21 21 C 1.53000 * 117.50063 * 84.71586 * 20 19 18 22 22 C 1.53002 * 60.02940 * 252.49714 * 21 20 19 23 23 N 1.33773 * 106.49046 * 359.59343 * 19 18 17 24 24 N 1.28629 * 108.89215 * 0.26240 * 23 19 18 25 25 H 0.97000 * 119.99538 * 359.97438 * 1 2 3 26 26 H 0.96995 * 120.00189 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47190 * 60.00558 * 10 9 7 28 28 H 1.08997 * 109.47171 * 300.00034 * 10 9 7 29 29 H 1.08992 * 109.47165 * 60.00287 * 11 10 9 30 30 H 1.08997 * 109.47016 * 299.99739 * 11 10 9 31 31 H 1.09002 * 109.47123 * 60.00203 * 12 11 10 32 32 H 1.08996 * 109.47547 * 300.00122 * 12 11 10 33 33 H 0.96992 * 119.99857 * 0.02562 * 13 12 11 34 34 H 1.09002 * 109.47137 * 60.00101 * 16 14 13 35 35 H 1.08997 * 109.47070 * 299.99671 * 16 14 13 36 36 H 1.08005 * 126.90881 * 359.97438 * 18 17 16 37 37 H 1.09008 * 115.56062 * 230.40216 * 20 19 18 38 38 H 1.09002 * 117.49833 * 359.97438 * 21 20 19 39 39 H 1.09002 * 117.49953 * 144.99860 * 21 20 19 40 40 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 41 41 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.8287 -6.1447 -0.0018 13 7 0.8767 -7.2582 -0.0018 14 6 1.3260 -8.5289 -0.0018 15 8 2.5183 -8.7505 -0.0014 16 6 0.3466 -9.6744 -0.0024 17 7 1.0791 -10.9431 -0.0029 18 6 0.9264 -11.9471 0.8913 19 6 1.7938 -12.9177 0.5204 20 6 2.0074 -14.2446 1.2018 21 6 1.0670 -15.3914 0.8259 22 6 0.9367 -14.7122 2.1907 23 7 2.4200 -12.4695 -0.5735 24 7 1.9741 -11.2969 -0.8577 25 1 -0.4849 0.8401 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6846 -3.7146 0.8895 28 1 2.6847 -3.7145 -0.8905 29 1 0.4375 -4.7618 -0.8914 30 1 0.4368 -4.7621 0.8886 31 1 2.4553 -6.2029 0.8882 32 1 2.4554 -6.2020 -0.8917 33 1 -0.0769 -7.0810 -0.0018 34 1 -0.2797 -9.6165 -0.8927 35 1 -0.2804 -9.6168 0.8873 36 1 0.2501 -11.9686 1.7331 37 1 3.0440 -14.4967 1.4260 38 1 0.2934 -15.1859 0.0860 39 1 1.4848 -16.3979 0.8025 40 1 0.0777 -14.0600 2.3485 41 1 1.2692 -15.2717 3.0651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159831155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:45 Heat of formation + Delta-G solvation = 71.528229 kcal Electronic energy + Delta-G solvation = -21764.963134 eV Core-core repulsion = 18296.349799 eV Total energy + Delta-G solvation = -3468.613335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.29297 -40.84826 -38.17100 -37.57269 -36.00762 -35.45668 -33.81476 -31.70753 -31.59316 -29.63820 -26.87492 -25.04067 -24.63246 -23.58000 -22.79643 -22.61708 -21.80283 -21.13650 -19.27199 -18.63772 -18.46816 -17.16507 -17.02510 -16.86199 -16.50907 -16.35466 -15.86034 -15.58672 -15.36187 -15.28925 -15.05451 -14.52729 -14.23744 -13.65262 -13.33577 -13.20607 -12.85717 -12.62957 -12.55912 -12.44113 -12.29389 -12.11401 -12.07162 -12.05706 -11.85586 -11.79762 -11.40426 -11.15923 -10.97170 -10.84591 -10.22841 -9.97952 -9.03162 -7.98604 -5.27385 0.56696 1.24577 1.40124 1.47282 1.47598 1.48973 1.57883 2.07122 2.54701 2.89822 3.25857 3.35636 3.52025 3.74178 3.74925 3.90849 4.00013 4.02811 4.06931 4.08199 4.26492 4.30582 4.41382 4.43357 4.69827 4.71569 4.78769 4.85289 4.86854 4.99256 5.20477 5.22544 5.23580 5.30069 5.31972 5.33598 5.47888 5.54912 6.24712 6.40059 7.08546 7.31511 7.51547 8.05798 8.30002 9.24858 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.062183 B = 0.001853 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.172348 B =15106.714452 C =15237.818444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.251 4.251 8 H 0.073 0.927 9 N -0.745 5.745 10 C 0.149 3.851 11 C -0.116 4.116 12 C 0.135 3.865 13 N -0.704 5.704 14 C 0.496 3.504 15 O -0.573 6.573 16 C 0.096 3.904 17 N -0.280 5.280 18 C -0.031 4.031 19 C -0.010 4.010 20 C -0.098 4.098 21 C -0.166 4.166 22 C -0.144 4.144 23 N -0.312 5.312 24 N -0.104 5.104 25 H 0.253 0.747 26 H 0.377 0.623 27 H 0.021 0.979 28 H 0.018 0.982 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.424 0.576 34 H 0.162 0.838 35 H 0.193 0.807 36 H 0.239 0.761 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -29.958 5.733 31.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.383 4.383 8 H 0.091 0.909 9 N -0.389 5.389 10 C 0.022 3.978 11 C -0.154 4.154 12 C 0.010 3.990 13 N -0.358 5.358 14 C 0.281 3.719 15 O -0.451 6.451 16 C -0.027 4.027 17 N -0.074 5.074 18 C -0.181 4.181 19 C -0.148 4.148 20 C -0.119 4.119 21 C -0.204 4.204 22 C -0.181 4.181 23 N -0.178 5.178 24 N -0.083 5.083 25 H 0.061 0.939 26 H 0.209 0.791 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.262 0.738 34 H 0.180 0.820 35 H 0.210 0.790 36 H 0.255 0.745 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.120 -29.542 4.438 30.309 hybrid contribution -0.516 1.239 0.577 1.461 sum -5.636 -28.303 5.015 29.291 Atomic orbital electron populations 1.69802 1.06459 1.26129 1.59302 1.25552 0.96475 1.01029 1.03457 0.85081 0.78139 0.79765 0.76812 1.19347 1.21871 1.21772 1.19676 0.91539 0.85513 1.41538 0.90892 1.42514 1.05751 1.01061 1.89531 1.20694 0.94238 0.84995 0.97825 1.21686 0.98366 0.91696 1.03685 1.21074 0.91712 0.84467 1.01765 1.45697 1.11698 1.04207 1.74204 1.20927 0.89540 0.85041 0.76427 1.90843 1.18919 1.85020 1.50284 1.22358 0.92356 0.75934 1.12097 1.47044 1.26595 1.14778 1.18981 1.23982 1.06038 0.88230 0.99858 1.21584 0.98231 0.99000 0.95967 1.20077 0.98041 0.89207 1.04526 1.23054 1.01274 0.96712 0.99362 1.23184 0.99093 1.02519 0.93325 1.75005 1.23342 1.03656 1.15798 1.78388 1.04648 1.08800 1.16447 0.93863 0.79087 0.96145 0.96368 0.90421 0.90101 0.92066 0.92471 0.73817 0.82033 0.79036 0.74482 0.86922 0.89248 0.87231 0.86797 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.90 13.06 21.65 0.28 -57.62 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.75 -36.96 5.60 -343.43 -1.92 -38.88 16 10 C 0.15 5.70 6.26 86.38 0.54 6.24 16 11 C -0.12 -3.08 5.44 30.60 0.17 -2.91 16 12 C 0.13 3.18 5.67 86.38 0.49 3.67 16 13 N -0.70 -11.34 5.56 -463.05 -2.57 -13.91 16 14 C 0.50 9.73 7.84 87.66 0.69 10.42 16 15 O -0.57 -18.75 15.68 -3.00 -0.05 -18.80 16 16 C 0.10 0.87 6.94 85.63 0.59 1.46 16 17 N -0.28 -5.27 3.20 -351.45 -1.12 -6.39 16 18 C -0.03 -0.44 10.89 83.49 0.91 0.47 16 19 C -0.01 -0.20 6.88 41.59 0.29 0.09 16 20 C -0.10 -1.44 6.33 -11.52 -0.07 -1.51 16 21 C -0.17 -1.73 10.23 30.60 0.31 -1.42 16 22 C -0.14 -0.97 10.03 30.62 0.31 -0.66 16 23 N -0.31 -9.39 12.41 -48.61 -0.60 -10.00 16 24 N -0.10 -3.08 12.13 37.02 0.45 -2.63 16 25 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.38 19.37 7.67 -92.71 -0.71 18.66 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.42 3.37 8.47 -92.71 -0.79 2.59 16 34 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.19 -0.44 8.07 -2.39 -0.02 -0.46 16 36 H 0.24 0.66 7.45 -2.91 -0.02 0.64 16 37 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.11 0.35 7.23 -2.39 -0.02 0.33 16 41 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -87.51 355.11 1.58 -85.93 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -0.44 Total: 15.48 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 5.53 Total: -0.97 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -5.49 Total: -129.43 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.05 Total: -18.80 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -87.51 1.58 -85.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159831155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.462 kcal (2) G-P(sol) polarization free energy of solvation -87.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds