Wall clock time and date at job start Tue Mar 31 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.47015 * 111.00239 * 2 1 4 4 C 1.53089 * 109.25958 * 177.60907 * 3 2 1 5 5 O 1.43011 * 109.26315 * 56.84764 * 4 3 2 6 6 C 1.43015 * 113.73917 * 301.33034 * 5 4 3 7 7 H 1.09004 * 109.50840 * 298.69421 * 6 5 4 8 8 C 1.52997 * 109.51046 * 178.60061 * 6 5 4 9 9 N 1.46505 * 109.46842 * 65.00086 * 8 6 5 10 10 C 1.39123 * 119.99656 * 180.02562 * 9 8 6 11 11 C 1.39168 * 119.63696 * 359.97438 * 10 9 8 12 12 C 1.38204 * 119.17537 * 180.02562 * 11 10 9 13 13 C 1.39453 * 118.44637 * 359.97438 * 12 11 10 14 14 O 1.35812 * 120.40321 * 180.02562 * 13 12 11 15 15 C 1.34812 * 117.00148 * 5.47935 * 14 13 12 16 16 H 1.08003 * 119.99668 * 354.94085 * 15 14 13 17 17 C 1.38626 * 120.00404 * 174.66657 * 15 14 13 18 18 N 1.31581 * 119.99807 * 0.27583 * 17 15 14 19 19 Si 1.86798 * 120.00178 * 180.27484 * 17 15 14 20 20 H 1.48502 * 109.47151 * 60.00082 * 19 17 15 21 21 H 1.48500 * 109.47301 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47226 * 300.00076 * 19 17 15 23 23 C 1.38669 * 119.19385 * 0.27513 * 13 12 11 24 24 N 1.31931 * 120.75659 * 359.41115 * 23 13 12 25 25 C 1.47014 * 111.00109 * 236.36539 * 2 1 3 26 26 H 1.09002 * 109.47442 * 63.95389 * 1 2 3 27 27 H 1.09002 * 109.47144 * 183.95435 * 1 2 3 28 28 H 1.09000 * 109.47206 * 303.95409 * 1 2 3 29 29 H 1.09006 * 109.50612 * 57.66957 * 3 2 1 30 30 H 1.09003 * 109.50454 * 297.54484 * 3 2 1 31 31 H 1.09009 * 109.51030 * 296.91153 * 4 3 2 32 32 H 1.09006 * 109.54233 * 176.80723 * 4 3 2 33 33 H 1.09002 * 109.47288 * 305.00356 * 8 6 5 34 34 H 1.09003 * 109.47200 * 184.99591 * 8 6 5 35 35 H 0.96996 * 120.00126 * 0.02562 * 9 8 6 36 36 H 1.08002 * 120.40792 * 0.02576 * 11 10 9 37 37 H 1.07992 * 120.77484 * 180.02562 * 12 11 10 38 38 H 0.96997 * 119.99783 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.62342 * 179.72104 * 23 13 12 40 40 H 1.08995 * 109.50968 * 62.45781 * 25 2 1 41 41 H 1.09008 * 109.50795 * 302.32440 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5248 1.3264 0.0603 5 8 4.0174 0.5574 -1.0403 6 6 3.5249 -0.7849 -1.0709 7 1 3.8391 -1.3086 -0.1680 8 6 4.0824 -1.5058 -2.2999 9 7 5.5369 -1.6298 -2.1752 10 6 6.2703 -2.2543 -3.1790 11 6 5.6145 -2.7589 -4.2980 12 6 6.3524 -3.3779 -5.2892 13 6 7.7343 -3.4724 -5.1276 14 8 8.4979 -4.0722 -6.0772 15 6 7.8758 -4.4577 -7.2094 16 1 6.8038 -4.3596 -7.2967 17 6 8.6126 -4.9747 -8.2637 18 7 9.9186 -5.0943 -8.1573 19 14 7.7514 -5.5016 -9.8353 20 1 7.0462 -4.3367 -10.4278 21 1 8.7551 -6.0167 -10.8010 22 1 6.7682 -6.5708 -9.5265 23 6 8.3187 -2.9511 -3.9833 24 7 7.5845 -2.3611 -3.0595 25 6 1.9958 -0.7602 -1.1427 26 1 -0.3634 0.4512 -0.9233 27 1 -0.3633 -1.0252 0.0709 28 1 -0.3633 0.5740 0.8524 29 1 1.6133 1.9092 0.8682 30 1 1.6827 1.8825 -0.9110 31 1 3.8385 0.8643 0.9965 32 1 3.9227 2.3396 0.0034 33 1 3.8421 -0.9345 -3.1965 34 1 3.6380 -2.4986 -2.3715 35 1 5.9885 -1.2766 -1.3928 36 1 4.5424 -2.6679 -4.3906 37 1 5.8701 -3.7784 -6.1686 38 1 10.4342 -5.4563 -8.8948 39 1 9.3879 -3.0245 -3.8489 40 1 1.6827 -0.2843 -2.0720 41 1 1.6133 -1.7804 -1.1087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162683133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:45 Heat of formation + Delta-G solvation = -16.577606 kcal Electronic energy + Delta-G solvation = -22744.516946 eV Core-core repulsion = 19239.790305 eV Total energy + Delta-G solvation = -3504.726641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09002 -39.45662 -37.30171 -36.14547 -35.02779 -32.33580 -31.76889 -31.18099 -29.36191 -28.18467 -26.08149 -25.05812 -24.45225 -23.25297 -22.13262 -21.08655 -20.74127 -18.11793 -17.41011 -16.85153 -16.56467 -16.24909 -15.90835 -15.48711 -15.18402 -15.02542 -14.43514 -14.19210 -14.06025 -13.99421 -13.52468 -13.40292 -13.08304 -12.75129 -12.61826 -12.35613 -12.28205 -12.09373 -11.73655 -11.64395 -11.43438 -11.43134 -11.01304 -10.82354 -10.51117 -9.95314 -9.61522 -9.30185 -8.92885 -8.85949 -8.70408 -8.51443 -6.61476 -6.39001 -3.96245 2.07626 2.46267 3.15190 3.16709 3.19207 3.24759 3.44355 3.69168 4.00871 4.51079 4.54888 4.58813 4.71419 4.74621 4.84006 4.97160 5.04865 5.11184 5.13754 5.22127 5.32575 5.32968 5.36754 5.42067 5.47406 5.48777 5.63400 5.75091 5.79601 5.98597 6.04188 6.45570 6.46917 6.56063 6.76844 6.89014 7.14362 7.21806 7.30647 7.71619 8.02269 8.19049 8.95510 9.06272 9.76367 10.78982 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031868 B = 0.002623 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.408549 B =10673.286354 C =11317.720833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.015 3.985 4 C 0.063 3.937 5 O -0.373 6.373 6 C 0.085 3.915 7 H 0.075 0.925 8 C 0.149 3.851 9 N -0.734 5.734 10 C 0.312 3.688 11 C -0.186 4.186 12 C -0.155 4.155 13 C 0.064 3.936 14 O -0.178 6.178 15 C -0.390 4.390 16 H 0.087 0.913 17 C 0.039 3.961 18 N -0.864 5.864 19 Si 0.939 3.061 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.271 1.271 23 C 0.070 3.930 24 N -0.501 5.501 25 C 0.025 3.975 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.399 0.601 36 H 0.115 0.885 37 H 0.136 0.864 38 H 0.270 0.730 39 H 0.152 0.848 40 H 0.048 0.952 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.094 10.048 14.448 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.113 4.113 4 C -0.014 4.014 5 O -0.291 6.291 6 C 0.026 3.974 7 H 0.092 0.908 8 C 0.023 3.977 9 N -0.374 5.374 10 C 0.080 3.920 11 C -0.210 4.210 12 C -0.182 4.182 13 C 0.008 3.992 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.105 0.895 17 C -0.165 4.165 18 N -0.500 5.500 19 Si 0.764 3.236 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.090 4.090 24 N -0.218 5.218 25 C -0.103 4.103 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.234 0.766 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.079 0.921 39 H 0.169 0.831 40 H 0.066 0.934 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.140 10.056 15.210 25.025 hybrid contribution -1.399 -0.103 -1.836 2.311 sum -18.539 9.953 13.374 24.932 Atomic orbital electron populations 1.22387 0.86642 1.02616 1.00712 1.62185 1.08383 1.13683 1.42454 1.22841 0.96891 0.89776 1.01767 1.22656 0.91840 0.96665 0.90259 1.88101 1.69713 1.23185 1.48137 1.22362 0.91887 0.83998 0.99111 0.90752 1.21091 0.81604 0.98668 0.96371 1.43726 1.04251 1.66554 1.22857 1.17890 0.88185 0.96734 0.89200 1.21069 0.99573 1.05203 0.95172 1.21389 0.93785 1.02810 1.00244 1.20244 0.90706 0.95780 0.92455 1.83994 1.34630 1.65651 1.23900 1.21178 0.92683 1.42447 0.90399 0.89547 1.25235 0.95598 0.97093 0.98605 1.70034 1.05142 1.42322 1.32480 0.85814 0.78583 0.79075 0.80121 1.19621 1.20319 1.19615 1.21460 0.99060 0.99031 0.89405 1.66925 1.05211 1.19099 1.30525 1.22725 0.95430 0.99832 0.92358 0.95382 0.90984 0.91151 0.89619 0.93813 0.92199 0.88270 0.91977 0.91160 0.76620 0.86697 0.84683 0.92060 0.83111 0.93400 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.61 60.06 0.58 0.73 16 2 N -0.54 -4.41 4.99 -242.60 -1.21 -5.62 16 3 C 0.02 0.12 5.66 -3.72 -0.02 0.09 16 4 C 0.06 0.53 7.01 37.20 0.26 0.79 16 5 O -0.37 -4.25 10.42 -35.23 -0.37 -4.61 16 6 C 0.08 0.86 2.84 -26.68 -0.08 0.78 16 7 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 8 C 0.15 1.75 4.56 -4.04 -0.02 1.73 16 9 N -0.73 -11.16 5.68 -60.38 -0.34 -11.51 16 10 C 0.31 5.95 7.65 -154.90 -1.19 4.77 16 11 C -0.19 -3.51 9.32 -39.25 -0.37 -3.87 16 12 C -0.16 -3.38 9.25 -39.14 -0.36 -3.74 16 13 C 0.06 1.55 6.67 -38.97 -0.26 1.30 16 14 O -0.18 -5.09 9.77 -0.09 0.00 -5.09 16 15 C -0.39 -10.90 9.50 30.88 0.29 -10.61 16 16 H 0.09 2.22 5.25 -52.48 -0.28 1.94 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 19 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 C 0.07 1.56 11.14 -17.35 -0.19 1.37 16 24 N -0.50 -10.56 10.39 -12.25 -0.13 -10.69 16 25 C 0.03 0.21 4.95 -3.71 -0.02 0.20 16 26 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.76 7.92 -51.93 -0.41 0.35 16 34 H 0.07 0.74 7.93 -51.93 -0.41 0.33 16 35 H 0.40 5.91 8.60 -40.82 -0.35 5.56 16 36 H 0.12 1.80 6.70 -52.49 -0.35 1.45 16 37 H 0.14 2.86 5.75 -52.49 -0.30 2.56 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.15 3.18 8.06 -52.49 -0.42 2.75 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -32.29 339.35 -8.55 -40.84 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.89 Total: 6.24 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.47 Total: -5.51 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.92 Total: -52.50 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.37 Total: -9.70 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.29 -8.55 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162683133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.259 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds