Wall clock time and date at job start Tue Mar 31 2020 03:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.47015 * 111.00239 * 2 1 4 4 C 1.53089 * 109.25958 * 177.60907 * 3 2 1 5 5 O 1.43011 * 109.26315 * 56.84764 * 4 3 2 6 6 C 1.43015 * 113.73917 * 301.33034 * 5 4 3 7 7 H 1.09004 * 109.50840 * 298.69421 * 6 5 4 8 8 C 1.52997 * 109.51046 * 178.60061 * 6 5 4 9 9 N 1.46505 * 109.46842 * 65.00086 * 8 6 5 10 10 C 1.39123 * 119.99656 * 180.02562 * 9 8 6 11 11 C 1.39168 * 119.63696 * 359.97438 * 10 9 8 12 12 C 1.38204 * 119.17537 * 180.02562 * 11 10 9 13 13 C 1.39453 * 118.44637 * 359.97438 * 12 11 10 14 14 O 1.35812 * 120.40321 * 180.02562 * 13 12 11 15 15 C 1.34812 * 117.00148 * 5.47935 * 14 13 12 16 16 H 1.08003 * 119.99668 * 354.94085 * 15 14 13 17 17 C 1.38626 * 120.00404 * 174.66657 * 15 14 13 18 18 N 1.31581 * 119.99807 * 0.27583 * 17 15 14 19 19 Si 1.86798 * 120.00178 * 180.27484 * 17 15 14 20 20 H 1.48502 * 109.47151 * 60.00082 * 19 17 15 21 21 H 1.48500 * 109.47301 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47226 * 300.00076 * 19 17 15 23 23 C 1.38669 * 119.19385 * 0.27513 * 13 12 11 24 24 N 1.31931 * 120.75659 * 359.41115 * 23 13 12 25 25 C 1.47014 * 111.00109 * 236.36539 * 2 1 3 26 26 H 1.09002 * 109.47442 * 63.95389 * 1 2 3 27 27 H 1.09002 * 109.47144 * 183.95435 * 1 2 3 28 28 H 1.09000 * 109.47206 * 303.95409 * 1 2 3 29 29 H 1.09006 * 109.50612 * 57.66957 * 3 2 1 30 30 H 1.09003 * 109.50454 * 297.54484 * 3 2 1 31 31 H 1.09009 * 109.51030 * 296.91153 * 4 3 2 32 32 H 1.09006 * 109.54233 * 176.80723 * 4 3 2 33 33 H 1.09002 * 109.47288 * 305.00356 * 8 6 5 34 34 H 1.09003 * 109.47200 * 184.99591 * 8 6 5 35 35 H 0.96996 * 120.00126 * 0.02562 * 9 8 6 36 36 H 1.08002 * 120.40792 * 0.02576 * 11 10 9 37 37 H 1.07992 * 120.77484 * 180.02562 * 12 11 10 38 38 H 0.96997 * 119.99783 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.62342 * 179.72104 * 23 13 12 40 40 H 1.08995 * 109.50968 * 62.45781 * 25 2 1 41 41 H 1.09008 * 109.50795 * 302.32440 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5248 1.3264 0.0603 5 8 4.0174 0.5574 -1.0403 6 6 3.5249 -0.7849 -1.0709 7 1 3.8391 -1.3086 -0.1680 8 6 4.0824 -1.5058 -2.2999 9 7 5.5369 -1.6298 -2.1752 10 6 6.2703 -2.2543 -3.1790 11 6 5.6145 -2.7589 -4.2980 12 6 6.3524 -3.3779 -5.2892 13 6 7.7343 -3.4724 -5.1276 14 8 8.4979 -4.0722 -6.0772 15 6 7.8758 -4.4577 -7.2094 16 1 6.8038 -4.3596 -7.2967 17 6 8.6126 -4.9747 -8.2637 18 7 9.9186 -5.0943 -8.1573 19 14 7.7514 -5.5016 -9.8353 20 1 7.0462 -4.3367 -10.4278 21 1 8.7551 -6.0167 -10.8010 22 1 6.7682 -6.5708 -9.5265 23 6 8.3187 -2.9511 -3.9833 24 7 7.5845 -2.3611 -3.0595 25 6 1.9958 -0.7602 -1.1427 26 1 -0.3634 0.4512 -0.9233 27 1 -0.3633 -1.0252 0.0709 28 1 -0.3633 0.5740 0.8524 29 1 1.6133 1.9092 0.8682 30 1 1.6827 1.8825 -0.9110 31 1 3.8385 0.8643 0.9965 32 1 3.9227 2.3396 0.0034 33 1 3.8421 -0.9345 -3.1965 34 1 3.6380 -2.4986 -2.3715 35 1 5.9885 -1.2766 -1.3928 36 1 4.5424 -2.6679 -4.3906 37 1 5.8701 -3.7784 -6.1686 38 1 10.4342 -5.4563 -8.8948 39 1 9.3879 -3.0245 -3.8489 40 1 1.6827 -0.2843 -2.0720 41 1 1.6133 -1.7804 -1.1087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162683133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:43 Heat of formation + Delta-G solvation = -40.890904 kcal Electronic energy + Delta-G solvation = -22745.571250 eV Core-core repulsion = 19239.790305 eV Total energy + Delta-G solvation = -3505.780945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.28733 -40.68389 -39.05232 -36.96381 -36.19047 -34.24907 -32.88710 -32.79007 -30.16878 -29.48600 -27.46353 -26.63097 -25.06961 -24.69261 -23.41237 -22.51782 -21.44720 -19.97833 -19.08397 -17.82919 -17.73348 -17.49787 -17.03852 -16.32544 -16.21318 -15.98420 -15.83659 -15.78602 -15.41010 -15.10549 -14.84301 -14.67589 -14.54120 -14.01473 -13.65648 -13.51835 -13.33903 -13.26426 -13.18655 -12.87067 -12.67403 -12.34251 -12.16855 -12.12009 -11.56958 -11.55311 -10.98756 -10.67723 -10.57909 -10.39030 -10.28627 -9.44415 -8.40869 -8.24356 -6.05851 0.38598 0.75138 1.38594 1.49380 1.54663 2.17833 2.26845 2.70180 2.87133 2.91655 3.22484 3.55181 3.77797 3.83933 3.87748 3.97009 4.05698 4.12391 4.18262 4.30610 4.37470 4.40713 4.48904 4.57212 4.62082 4.64058 4.67006 4.81185 4.88389 4.92408 4.98418 4.99535 5.01752 5.29640 5.51603 5.56272 5.87692 5.93268 6.02850 6.16161 6.28128 6.74555 7.03058 7.34331 7.84293 8.82291 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031868 B = 0.002623 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.408549 B =10673.286354 C =11317.720833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.553 5.553 3 C 0.018 3.982 4 C 0.059 3.941 5 O -0.399 6.399 6 C 0.090 3.910 7 H 0.074 0.926 8 C 0.143 3.857 9 N -0.723 5.723 10 C 0.327 3.673 11 C -0.180 4.180 12 C -0.149 4.149 13 C 0.023 3.977 14 O -0.228 6.228 15 C -0.411 4.411 16 H 0.102 0.898 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.018 2.982 20 H -0.258 1.258 21 H -0.275 1.275 22 H -0.256 1.256 23 C 0.065 3.935 24 N -0.516 5.516 25 C 0.029 3.971 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.402 0.598 36 H 0.156 0.844 37 H 0.140 0.860 38 H 0.271 0.729 39 H 0.152 0.848 40 H 0.044 0.956 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.562 10.769 15.236 28.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.110 4.110 4 C -0.018 4.018 5 O -0.318 6.318 6 C 0.032 3.968 7 H 0.092 0.908 8 C 0.018 3.982 9 N -0.361 5.361 10 C 0.092 3.908 11 C -0.204 4.204 12 C -0.176 4.176 13 C -0.030 4.030 14 O -0.134 6.134 15 C -0.487 4.487 16 H 0.119 0.881 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.837 3.163 20 H -0.182 1.182 21 H -0.200 1.200 22 H -0.181 1.181 23 C -0.092 4.092 24 N -0.234 5.234 25 C -0.100 4.100 26 H 0.046 0.954 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.238 0.762 36 H 0.174 0.826 37 H 0.158 0.842 38 H 0.080 0.920 39 H 0.169 0.831 40 H 0.063 0.937 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.664 10.817 16.069 28.323 hybrid contribution -0.507 -0.123 -1.738 1.815 sum -21.170 10.694 14.331 27.712 Atomic orbital electron populations 1.22437 0.85442 1.03281 1.01178 1.62213 1.09513 1.13899 1.42185 1.22842 0.96182 0.89731 1.02270 1.22824 0.92613 0.96903 0.89458 1.88056 1.70502 1.23825 1.49408 1.22285 0.92932 0.83506 0.98063 0.90799 1.21378 0.79227 1.00152 0.97431 1.43965 1.05704 1.64750 1.21657 1.18326 0.87865 0.94869 0.89742 1.21391 1.01408 1.03733 0.93893 1.21577 0.92884 1.02132 1.00984 1.20605 0.92024 0.97667 0.92689 1.83960 1.36265 1.68138 1.25058 1.21738 0.93622 1.42580 0.90785 0.88088 1.26549 0.96360 0.96941 1.02334 1.70194 1.07197 1.44731 1.33952 0.84660 0.77533 0.79184 0.74918 1.18242 1.19960 1.18056 1.21529 0.99519 0.98907 0.89259 1.67016 1.06291 1.19843 1.30242 1.22676 0.94091 1.00742 0.92470 0.95370 0.90353 0.90145 0.87905 0.94397 0.92034 0.87128 0.91865 0.89065 0.76239 0.82603 0.84237 0.91982 0.83101 0.93742 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.61 127.69 1.23 1.46 16 2 N -0.55 -7.47 4.99 -921.44 -4.59 -12.06 16 3 C 0.02 0.22 5.66 86.31 0.49 0.71 16 4 C 0.06 0.85 7.01 72.01 0.50 1.36 16 5 O -0.40 -8.22 10.42 -148.98 -1.55 -9.77 16 6 C 0.09 1.57 2.84 30.63 0.09 1.66 16 7 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 8 C 0.14 2.86 4.56 86.38 0.39 3.26 16 9 N -0.72 -20.01 5.68 -344.93 -1.96 -21.97 16 10 C 0.33 11.80 7.65 133.03 1.02 12.82 16 11 C -0.18 -6.33 9.32 22.49 0.21 -6.12 16 12 C -0.15 -6.38 9.25 22.55 0.21 -6.17 16 13 C 0.02 1.17 6.67 22.67 0.15 1.32 16 14 O -0.23 -13.64 9.77 -23.25 -0.23 -13.87 16 15 C -0.41 -23.61 9.50 67.91 0.64 -22.96 16 16 H 0.10 5.22 5.25 -2.91 -0.02 5.21 16 17 C -0.02 -1.39 5.49 84.82 0.47 -0.93 16 18 N -0.92 -56.64 13.67 21.61 0.30 -56.35 16 19 Si 1.02 42.44 29.55 68.60 2.03 44.47 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 23 C 0.07 3.00 11.14 84.78 0.94 3.95 16 24 N -0.52 -21.47 10.39 -192.67 -2.00 -23.47 16 25 C 0.03 0.41 4.95 86.32 0.43 0.83 16 26 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.06 1.32 7.92 -2.39 -0.02 1.30 16 34 H 0.09 1.53 7.93 -2.39 -0.02 1.51 16 35 H 0.40 10.99 8.60 -92.71 -0.80 10.19 16 36 H 0.16 4.18 6.70 -2.91 -0.02 4.16 16 37 H 0.14 5.78 5.75 -2.91 -0.02 5.76 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.15 6.71 8.06 -2.91 -0.02 6.69 16 40 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -72.46 339.35 -0.99 -73.46 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.25 Total: 28.38 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 6.77 Total: -8.82 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -8.26 Total: -113.84 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -1.78 Total: -23.64 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -72.46 -0.99 -73.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162683133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.565 kcal (2) G-P(sol) polarization free energy of solvation -72.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds