Wall clock time and date at job start Tue Mar 31 2020 03:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48496 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46921 * 299.99421 * 3 2 1 6 6 H 1.48498 * 109.46946 * 59.99738 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 H 1.08990 * 109.69501 * 60.54254 * 16 14 13 18 18 C 1.53445 * 109.69128 * 181.13198 * 16 14 13 19 19 C 1.53118 * 109.54635 * 169.43085 * 18 16 14 20 20 C 1.53420 * 109.57368 * 289.92291 * 19 18 16 21 21 C 1.50595 * 108.33436 * 49.81737 * 20 19 18 22 22 N 1.32915 * 129.16173 * 163.38716 * 21 20 19 23 23 N 1.29013 * 108.63958 * 180.23176 * 22 21 20 24 24 N 1.29112 * 110.25824 * 359.97438 * 23 22 21 25 25 H 0.96998 * 126.01338 * 179.97438 * 24 23 22 26 26 C 1.34403 * 107.98430 * 359.92543 * 24 23 22 27 27 H 0.97003 * 120.00466 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 30 30 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 31 31 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 32 32 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 33 33 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 34 34 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 35 35 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 36 36 H 1.09002 * 109.45300 * 289.44722 * 18 16 14 37 37 H 1.08998 * 109.45642 * 49.39459 * 18 16 14 38 38 H 1.09001 * 109.44935 * 169.89614 * 19 18 16 39 39 H 1.08998 * 109.46022 * 49.95839 * 19 18 16 40 40 H 1.09006 * 109.69028 * 290.11023 * 20 19 18 41 41 H 1.09003 * 109.72744 * 169.54981 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8768 -7.2583 0.0005 14 6 1.3262 -8.5289 0.0067 15 8 2.5186 -8.7505 0.0072 16 6 0.3468 -9.6743 0.0130 17 1 -0.2758 -9.6301 -0.8805 18 6 1.1087 -11.0058 0.0479 19 6 0.1281 -12.1502 0.3188 20 6 -0.3757 -12.0637 1.7654 21 6 -0.8403 -10.6544 2.0217 22 7 -1.6109 -10.1895 2.9999 23 7 -1.7632 -8.9189 2.8362 24 7 -1.1227 -8.5232 1.7873 25 1 -1.0825 -7.6136 1.4530 26 6 -0.5206 -9.5933 1.2406 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 -0.0002 29 1 2.6847 -3.7145 0.8905 30 1 2.6848 -3.7145 -0.8895 31 1 0.4375 -4.7619 -0.8903 32 1 0.4368 -4.7621 0.8897 33 1 2.4549 -6.2024 0.8910 34 1 2.4561 -6.2025 -0.8890 35 1 -0.0768 -7.0810 0.0005 36 1 1.6000 -11.1682 -0.9115 37 1 1.8582 -10.9747 0.8387 38 1 0.6327 -13.1043 0.1665 39 1 -0.7171 -12.0737 -0.3652 40 1 0.4334 -12.3143 2.4516 41 1 -1.2057 -12.7558 1.9079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165276767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:28 Heat of formation + Delta-G solvation = 52.550053 kcal Electronic energy + Delta-G solvation = -22932.566282 eV Core-core repulsion = 19463.129992 eV Total energy + Delta-G solvation = -3469.436290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.89171 -40.25090 -37.34338 -36.17861 -34.74117 -34.15011 -32.15849 -31.04185 -30.50645 -29.56408 -25.94524 -24.69217 -23.58879 -23.11183 -22.44709 -21.56700 -20.86798 -19.96434 -18.62048 -17.58287 -17.02174 -16.62237 -16.20752 -16.04161 -15.40308 -14.79810 -14.67195 -14.32505 -14.23668 -14.04060 -13.77658 -13.37460 -13.13111 -12.73508 -12.50321 -12.01956 -11.81528 -11.78111 -11.69627 -11.48487 -11.15593 -11.04295 -11.03569 -10.87147 -10.75919 -10.73340 -10.27244 -10.07122 -9.78815 -9.41727 -9.26491 -8.95919 -7.01822 -5.84303 -3.13799 1.10004 2.05368 2.17688 2.33682 2.75103 3.39162 3.45076 3.47215 3.80339 3.90962 4.15996 4.27984 4.43539 4.51804 4.70333 4.77887 4.84718 4.92104 4.98944 5.10702 5.14452 5.41531 5.43828 5.49242 5.50090 5.58576 5.61303 5.74501 5.83747 5.87025 5.88125 6.02356 6.11724 6.18679 6.37309 6.64992 6.69407 7.01590 7.64079 7.75554 8.07817 8.34335 9.45810 10.01386 10.35861 11.38663 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029470 B = 0.002635 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.887862 B =10624.917298 C =11347.143304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.140 4.140 12 C 0.120 3.880 13 N -0.732 5.732 14 C 0.514 3.486 15 O -0.519 6.519 16 C -0.031 4.031 17 H 0.121 0.879 18 C -0.098 4.098 19 C -0.119 4.119 20 C -0.037 4.037 21 C -0.003 4.003 22 N -0.257 5.257 23 N -0.075 5.075 24 N -0.379 5.379 25 H 0.445 0.555 26 C -0.016 4.016 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.390 0.610 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -26.159 -1.438 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.029 3.971 11 C -0.178 4.178 12 C -0.003 4.003 13 N -0.385 5.385 14 C 0.299 3.701 15 O -0.394 6.394 16 C -0.055 4.055 17 H 0.138 0.862 18 C -0.136 4.136 19 C -0.157 4.157 20 C -0.076 4.076 21 C -0.143 4.143 22 N -0.123 5.123 23 N -0.054 5.054 24 N -0.100 5.100 25 H 0.292 0.708 26 C -0.152 4.152 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.224 0.776 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.914 -25.862 -0.171 25.933 hybrid contribution 0.195 1.685 -1.074 2.007 sum -1.719 -24.177 -1.244 24.270 Atomic orbital electron populations 1.69660 1.05164 1.25690 1.57722 1.24763 0.95569 0.97826 1.02826 0.86092 0.78819 0.83897 0.77244 1.20476 1.21775 1.21772 1.19279 0.91136 0.84043 1.42820 0.91013 1.42332 1.05841 0.99969 1.89676 1.20504 0.93169 0.85101 0.98341 1.21988 0.99743 0.93391 1.02723 1.21478 0.91616 0.84219 1.03022 1.46260 1.10177 1.06305 1.75729 1.20391 0.89691 0.83576 0.76490 1.90748 1.16246 1.84348 1.48051 1.20080 0.94558 0.96422 0.94451 0.86171 1.21490 0.97605 0.89949 1.04586 1.21683 0.99315 0.99010 0.95738 1.20045 1.01325 0.88880 0.97316 1.21743 1.01071 0.97604 0.93886 1.74882 1.15446 1.00910 1.21077 1.78654 1.16025 1.07504 1.03203 1.44883 1.33838 1.11454 1.19801 0.70775 1.21451 1.04109 0.88282 1.01315 0.93480 0.78316 0.95996 0.95947 0.91087 0.91376 0.90965 0.90722 0.77621 0.89564 0.89859 0.89821 0.91116 0.89508 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.12 5.60 -59.90 -0.34 -18.46 16 10 C 0.16 2.97 6.26 -4.04 -0.03 2.94 16 11 C -0.14 -1.92 5.44 -26.73 -0.15 -2.07 16 12 C 0.12 1.41 5.67 -4.04 -0.02 1.39 16 13 N -0.73 -6.82 5.13 -60.29 -0.31 -7.12 16 14 C 0.51 5.28 7.14 -10.99 -0.08 5.20 16 15 O -0.52 -7.26 15.84 5.55 0.09 -7.18 16 16 C -0.03 -0.23 2.91 -92.77 -0.27 -0.50 16 17 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 18 C -0.10 -0.64 4.66 -26.44 -0.12 -0.76 16 19 C -0.12 -0.56 5.90 -26.45 -0.16 -0.72 16 20 C -0.04 -0.24 6.30 -27.72 -0.17 -0.41 16 21 C 0.00 -0.03 7.11 -83.12 -0.59 -0.62 16 22 N -0.26 -3.27 12.40 33.16 0.41 -2.86 16 23 N -0.07 -0.93 13.40 60.35 0.81 -0.12 16 24 N -0.38 -3.56 6.76 33.39 0.23 -3.34 16 25 H 0.45 3.11 6.82 -190.07 -1.30 1.81 16 26 C -0.02 -0.14 6.38 -82.49 -0.53 -0.67 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.38 9.83 7.67 -40.82 -0.31 9.52 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.39 2.62 6.51 -40.82 -0.27 2.36 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -35.00 338.88 -7.56 -42.55 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.89 Total: 4.95 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.36 Total: -3.56 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 1.53 Total: -59.09 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.09 Total: -7.18 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.00 -7.56 -42.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165276767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.103 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds