Wall clock time and date at job start Tue Mar 31 2020 03:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48496 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46921 * 299.99421 * 3 2 1 6 6 H 1.48498 * 109.46946 * 59.99738 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 H 1.08990 * 109.69501 * 60.54254 * 16 14 13 18 18 C 1.53445 * 109.69128 * 181.13198 * 16 14 13 19 19 C 1.53118 * 109.54635 * 169.43085 * 18 16 14 20 20 C 1.53420 * 109.57368 * 289.92291 * 19 18 16 21 21 C 1.50595 * 108.33436 * 49.81737 * 20 19 18 22 22 N 1.32915 * 129.16173 * 163.38716 * 21 20 19 23 23 N 1.29013 * 108.63958 * 180.23176 * 22 21 20 24 24 N 1.29112 * 110.25824 * 359.97438 * 23 22 21 25 25 H 0.96998 * 126.01338 * 179.97438 * 24 23 22 26 26 C 1.34403 * 107.98430 * 359.92543 * 24 23 22 27 27 H 0.97003 * 120.00466 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 30 30 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 31 31 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 32 32 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 33 33 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 34 34 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 35 35 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 36 36 H 1.09002 * 109.45300 * 289.44722 * 18 16 14 37 37 H 1.08998 * 109.45642 * 49.39459 * 18 16 14 38 38 H 1.09001 * 109.44935 * 169.89614 * 19 18 16 39 39 H 1.08998 * 109.46022 * 49.95839 * 19 18 16 40 40 H 1.09006 * 109.69028 * 290.11023 * 20 19 18 41 41 H 1.09003 * 109.72744 * 169.54981 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8768 -7.2583 0.0005 14 6 1.3262 -8.5289 0.0067 15 8 2.5186 -8.7505 0.0072 16 6 0.3468 -9.6743 0.0130 17 1 -0.2758 -9.6301 -0.8805 18 6 1.1087 -11.0058 0.0479 19 6 0.1281 -12.1502 0.3188 20 6 -0.3757 -12.0637 1.7654 21 6 -0.8403 -10.6544 2.0217 22 7 -1.6109 -10.1895 2.9999 23 7 -1.7632 -8.9189 2.8362 24 7 -1.1227 -8.5232 1.7873 25 1 -1.0825 -7.6136 1.4530 26 6 -0.5206 -9.5933 1.2406 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 -0.0002 29 1 2.6847 -3.7145 0.8905 30 1 2.6848 -3.7145 -0.8895 31 1 0.4375 -4.7619 -0.8903 32 1 0.4368 -4.7621 0.8897 33 1 2.4549 -6.2024 0.8910 34 1 2.4561 -6.2025 -0.8890 35 1 -0.0768 -7.0810 0.0005 36 1 1.6000 -11.1682 -0.9115 37 1 1.8582 -10.9747 0.8387 38 1 0.6327 -13.1043 0.1665 39 1 -0.7171 -12.0737 -0.3652 40 1 0.4334 -12.3143 2.4516 41 1 -1.2057 -12.7558 1.9079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165276767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:27 Heat of formation + Delta-G solvation = 25.996120 kcal Electronic energy + Delta-G solvation = -22933.717747 eV Core-core repulsion = 19463.129992 eV Total energy + Delta-G solvation = -3470.587755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.65828 -41.09626 -38.04605 -37.39388 -36.08567 -35.08773 -33.76737 -31.94339 -31.18288 -30.95635 -27.26953 -25.70943 -24.65593 -24.04888 -23.50485 -22.67781 -21.90580 -20.55877 -19.46785 -19.11510 -18.18898 -17.46497 -17.21113 -16.94235 -16.50831 -16.28848 -15.48650 -15.34585 -15.25067 -14.90238 -14.78377 -14.71469 -14.50011 -13.81129 -13.36693 -13.18792 -12.87493 -12.74190 -12.61884 -12.51847 -12.43150 -12.25903 -12.12547 -12.07306 -12.01996 -11.83152 -11.66492 -11.39604 -11.07730 -10.98787 -10.31899 -10.00224 -9.05057 -7.99964 -5.28971 0.34663 1.26188 1.40829 1.46173 1.46552 1.56740 1.61304 1.94618 2.53394 3.15103 3.26155 3.34551 3.51147 3.66617 3.73478 3.90326 4.01848 4.15387 4.20529 4.27103 4.32171 4.39505 4.45550 4.57941 4.66353 4.67818 4.82911 4.97508 4.99079 5.11908 5.14452 5.19715 5.25921 5.27060 5.32597 5.46251 5.46529 5.70139 6.22370 6.25141 6.95964 7.27881 7.29866 8.04281 8.27448 9.23627 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029470 B = 0.002635 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.887862 B =10624.917298 C =11347.143304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.152 3.848 11 C -0.123 4.123 12 C 0.132 3.868 13 N -0.723 5.723 14 C 0.514 3.486 15 O -0.558 6.558 16 C -0.022 4.022 17 H 0.156 0.844 18 C -0.098 4.098 19 C -0.109 4.109 20 C -0.039 4.039 21 C -0.012 4.012 22 N -0.289 5.289 23 N -0.109 5.109 24 N -0.370 5.370 25 H 0.454 0.546 26 C -0.009 4.009 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.020 0.980 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.405 0.595 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -27.488 -2.542 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.025 3.975 11 C -0.161 4.161 12 C 0.007 3.993 13 N -0.376 5.376 14 C 0.300 3.700 15 O -0.435 6.435 16 C -0.045 4.045 17 H 0.173 0.827 18 C -0.137 4.137 19 C -0.147 4.147 20 C -0.078 4.078 21 C -0.153 4.153 22 N -0.155 5.155 23 N -0.088 5.088 24 N -0.092 5.092 25 H 0.302 0.698 26 C -0.145 4.145 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.241 0.759 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.625 -27.208 -1.265 27.286 hybrid contribution 0.165 2.039 -0.739 2.175 sum -1.460 -25.169 -2.003 25.291 Atomic orbital electron populations 1.69798 1.06541 1.26151 1.59374 1.25571 0.96459 1.01132 1.03527 0.85082 0.78228 0.79740 0.76769 1.19131 1.21810 1.21984 1.19664 0.91541 0.85404 1.41391 0.90735 1.42543 1.05744 1.01174 1.89557 1.20677 0.94099 0.84728 0.98034 1.21753 0.98619 0.92255 1.03448 1.21169 0.91593 0.84019 1.02477 1.46102 1.10664 1.05642 1.75189 1.20896 0.89652 0.84116 0.75337 1.90739 1.18074 1.84893 1.49821 1.20208 0.93905 0.95441 0.94938 0.82677 1.21531 0.97574 0.90069 1.04493 1.21668 0.99366 0.99180 0.94491 1.20237 1.01704 0.87135 0.98733 1.22366 1.00410 0.99376 0.93135 1.74841 1.16824 1.01254 1.22539 1.78599 1.17713 1.07808 1.04664 1.44894 1.33133 1.12071 1.19140 0.69773 1.21726 1.03539 0.87827 1.01457 0.93884 0.79209 0.96204 0.95782 0.90231 0.90809 0.91942 0.91006 0.75903 0.88444 0.91910 0.87671 0.89765 0.89362 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 3 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.75 -36.78 5.60 -343.44 -1.92 -38.70 16 10 C 0.15 5.63 6.26 86.38 0.54 6.17 16 11 C -0.12 -3.19 5.44 30.59 0.17 -3.02 16 12 C 0.13 2.92 5.67 86.38 0.49 3.41 16 13 N -0.72 -12.06 5.13 -463.05 -2.37 -14.44 16 14 C 0.51 9.61 7.14 87.66 0.63 10.24 16 15 O -0.56 -15.01 15.84 -3.04 -0.05 -15.06 16 16 C -0.02 -0.26 2.91 -12.19 -0.04 -0.29 16 17 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 18 C -0.10 -1.03 4.66 30.78 0.14 -0.89 16 19 C -0.11 -0.68 5.90 30.77 0.18 -0.50 16 20 C -0.04 -0.43 6.30 29.96 0.19 -0.24 16 21 C -0.01 -0.23 7.11 41.75 0.30 0.07 16 22 N -0.29 -7.31 12.40 -48.99 -0.61 -7.91 16 23 N -0.11 -2.71 13.40 37.02 0.50 -2.22 16 24 N -0.37 -6.58 6.76 -48.27 -0.33 -6.90 16 25 H 0.45 5.74 6.82 -219.68 -1.50 4.24 16 26 C -0.01 -0.14 6.38 41.50 0.26 0.12 16 27 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.38 19.34 7.67 -92.71 -0.71 18.62 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.40 4.48 6.51 -92.71 -0.60 3.88 16 36 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.95 7.75 -2.39 -0.02 0.93 16 38 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.08 0.35 8.12 -2.39 -0.02 0.33 16 40 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -75.94 338.88 -0.04 -75.98 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -1.74 Total: 21.15 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 4.17 Total: -1.59 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -4.45 Total: -128.18 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.05 Total: -15.06 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -75.94 -0.04 -75.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165276767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.976 kcal (2) G-P(sol) polarization free energy of solvation -75.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds