Wall clock time and date at job start Tue Mar 31 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08992 * 109.46983 * 2 1 4 4 O 1.42897 * 109.46733 * 120.00268 * 2 1 3 5 5 C 1.35909 * 116.99860 * 275.11905 * 4 2 1 6 6 C 1.39137 * 120.47354 * 5.48567 * 5 4 2 7 7 C 1.38538 * 118.37308 * 180.02562 * 6 5 4 8 8 C 1.38251 * 119.22524 * 0.02562 * 7 6 5 9 9 N 1.31847 * 120.88224 * 359.97438 * 8 7 6 10 10 C 1.31845 * 121.78723 * 359.97438 * 9 8 7 11 11 C 1.50696 * 109.46836 * 239.99741 * 2 1 3 12 12 O 1.21287 * 120.00513 * 244.99921 * 11 2 1 13 13 N 1.34780 * 120.00114 * 65.00211 * 11 2 1 14 14 C 1.46493 * 120.00529 * 179.97438 * 13 11 2 15 15 C 1.52997 * 109.47603 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47558 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47364 * 180.02562 * 16 15 14 18 18 C 1.36932 * 119.99752 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00634 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99708 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99745 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99946 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47062 * 90.00439 * 22 20 18 24 24 H 1.48495 * 109.47235 * 210.00278 * 22 20 18 25 25 H 1.48495 * 109.47457 * 330.00576 * 22 20 18 26 26 H 1.09004 * 109.46667 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47112 * 299.99959 * 1 2 3 28 28 H 1.09002 * 109.46801 * 60.00224 * 1 2 3 29 29 H 1.08003 * 120.81243 * 359.97438 * 6 5 4 30 30 H 1.08004 * 120.38630 * 179.97438 * 7 6 5 31 31 H 1.07995 * 119.56055 * 180.02562 * 8 7 6 32 32 H 1.07990 * 119.66074 * 180.02562 * 10 9 8 33 33 H 0.97002 * 119.99945 * 0.02562 * 13 11 2 34 34 H 1.09005 * 109.47319 * 300.00534 * 14 13 11 35 35 H 1.08999 * 109.47087 * 60.00015 * 14 13 11 36 36 H 1.09005 * 109.47027 * 300.00478 * 15 14 13 37 37 H 1.09004 * 109.46976 * 60.00237 * 15 14 13 38 38 H 1.09006 * 109.46513 * 300.00053 * 16 15 14 39 39 H 1.08999 * 109.46687 * 59.99757 * 16 15 14 40 40 H 0.97006 * 119.99731 * 359.97438 * 17 16 15 41 41 H 0.97003 * 119.99460 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1101 0.0619 2.3048 6 6 1.6562 1.3768 2.3390 7 6 1.7839 2.0868 3.5217 8 6 2.3539 1.4711 4.6204 9 7 2.7740 0.2231 4.5546 10 6 2.6700 -0.4874 3.4489 11 6 2.0323 -0.7105 -1.2304 12 8 2.6530 -1.7468 -1.1215 13 7 1.7919 -0.1943 -2.4520 14 6 2.2806 -0.8845 -3.6481 15 6 1.8763 -0.0941 -4.8942 16 6 2.3862 -0.8154 -6.1435 17 7 1.9995 -0.0583 -7.3366 18 6 2.3491 -0.5139 -8.5796 19 1 2.9095 -1.4316 -8.6807 20 6 1.9823 0.2034 -9.7102 21 7 1.2990 1.3215 -9.5871 22 14 2.4598 -0.4177 -11.4060 23 1 1.3903 -1.3066 -11.9268 24 1 2.6356 0.7359 -12.3243 25 1 3.7332 -1.1763 -11.3149 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.2160 1.8329 1.4646 30 1 1.4429 3.1097 3.5843 31 1 2.4557 2.0194 5.5453 32 1 3.0251 -1.5071 3.4334 33 1 1.2959 0.6348 -2.5392 34 1 3.3670 -0.9625 -3.6044 35 1 1.8463 -1.8832 -3.6942 36 1 0.7900 -0.0158 -4.9382 37 1 2.3110 0.9044 -4.8479 38 1 3.4725 -0.8940 -6.0997 39 1 1.9512 -1.8138 -6.1895 40 1 1.4959 0.7658 -7.2459 41 1 1.0430 1.8228 -10.3771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166350298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:13 Heat of formation + Delta-G solvation = -29.157073 kcal Electronic energy + Delta-G solvation = -22037.559336 eV Core-core repulsion = 18532.287208 eV Total energy + Delta-G solvation = -3505.272128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26330 -39.97771 -38.35205 -36.10193 -34.50229 -32.98605 -32.60632 -31.78031 -30.46269 -29.47383 -25.90945 -24.90968 -24.07402 -23.30626 -22.39555 -21.32048 -20.38237 -18.90066 -17.96268 -17.16804 -17.03826 -16.45582 -16.26054 -15.95988 -15.54122 -14.88293 -14.76991 -14.50674 -14.25319 -14.06380 -13.73300 -13.43205 -13.32126 -13.08520 -12.81147 -12.62662 -12.50798 -12.03452 -11.74366 -11.67700 -11.02966 -10.97154 -10.83029 -10.68457 -10.27862 -10.13137 -10.01438 -9.94374 -9.74017 -9.23622 -8.92025 -8.85320 -6.98068 -5.81341 -3.10372 0.70368 0.79752 2.17971 2.31337 3.20952 3.37654 3.41455 3.46759 3.48392 4.02946 4.13943 4.25897 4.29886 4.34697 4.42738 4.55313 4.65340 4.77870 4.99193 5.03513 5.09350 5.21746 5.30456 5.51990 5.53263 5.53312 5.60051 5.61059 5.86670 5.95056 5.97294 6.11123 6.25336 6.27406 6.72109 6.73846 6.76584 7.23893 7.54919 7.66644 7.94254 8.37606 9.48881 10.05293 10.39899 11.41617 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.045974 B = 0.002007 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.887659 B =13944.419682 C =14225.346440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.065 3.935 3 H 0.099 0.901 4 O -0.277 6.277 5 C 0.084 3.916 6 C -0.170 4.170 7 C -0.130 4.130 8 C 0.055 3.945 9 N -0.447 5.447 10 C 0.077 3.923 11 C 0.516 3.484 12 O -0.516 6.516 13 N -0.721 5.721 14 C 0.123 3.877 15 C -0.137 4.137 16 C 0.156 3.844 17 N -0.734 5.734 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.383 0.617 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.495 3.188 27.283 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.005 3.995 3 H 0.116 0.884 4 O -0.188 6.188 5 C 0.035 3.965 6 C -0.197 4.197 7 C -0.150 4.150 8 C -0.102 4.102 9 N -0.156 5.156 10 C -0.082 4.082 11 C 0.299 3.701 12 O -0.390 6.390 13 N -0.374 5.374 14 C 0.000 4.000 15 C -0.176 4.176 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.236 0.764 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.537 1.721 27.908 28.003 hybrid contribution -0.712 1.129 -1.877 2.303 sum -2.249 2.849 26.031 26.283 Atomic orbital electron populations 1.22352 0.92222 1.04854 1.04018 1.22278 0.96018 0.97043 0.84192 0.88368 1.86254 1.80692 1.36471 1.15352 1.20268 0.96628 0.91257 0.88309 1.21807 1.03555 0.94067 1.00248 1.22023 0.98802 1.01165 0.92977 1.22706 0.97252 0.91323 0.98899 1.67762 1.14853 1.07479 1.25494 1.22292 0.98679 1.01047 0.86144 1.19939 0.80421 0.85700 0.84034 1.90768 1.39103 1.22837 1.86298 1.45942 1.57972 1.28004 1.05515 1.21426 0.99828 0.96323 0.82421 1.21953 1.01935 0.99910 0.93771 1.20521 0.96944 0.94330 0.85426 1.42327 1.67055 1.27697 1.00714 1.19248 1.28849 1.05489 0.83608 0.91058 1.24761 1.00955 0.97384 0.97972 1.69659 1.43550 1.16547 1.28558 0.86156 0.78069 0.77536 0.84240 1.21666 1.21735 1.20699 0.90299 0.90690 0.89793 0.84035 0.84340 0.82436 0.81712 0.76426 0.91070 0.91021 0.91190 0.91211 0.95992 0.95981 0.78308 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 9.14 37.16 0.34 -0.76 16 2 C 0.06 0.55 2.64 -27.88 -0.07 0.48 16 3 H 0.10 0.59 6.36 -51.93 -0.33 0.26 16 4 O -0.28 -3.02 9.35 -39.31 -0.37 -3.39 16 5 C 0.08 0.78 6.62 -39.07 -0.26 0.53 16 6 C -0.17 -1.20 8.34 -39.14 -0.33 -1.52 16 7 C -0.13 -0.79 10.11 -39.47 -0.40 -1.19 16 8 C 0.05 0.40 11.18 -17.54 -0.20 0.21 16 9 N -0.45 -4.40 10.35 -13.13 -0.14 -4.54 16 10 C 0.08 0.76 11.14 -17.37 -0.19 0.56 16 11 C 0.52 6.10 7.18 -10.99 -0.08 6.02 16 12 O -0.52 -8.53 16.51 -14.31 -0.24 -8.76 16 13 N -0.72 -7.32 5.52 -60.30 -0.33 -7.65 16 14 C 0.12 1.55 5.67 -4.05 -0.02 1.53 16 15 C -0.14 -1.95 5.44 -26.73 -0.15 -2.10 16 16 C 0.16 3.01 6.26 -4.04 -0.03 2.98 16 17 N -0.73 -18.27 5.60 -59.91 -0.34 -18.61 16 18 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.38 6.92 -51.93 -0.36 0.02 16 28 H 0.08 0.37 7.93 -51.93 -0.41 -0.04 16 29 H 0.14 0.67 5.59 -52.48 -0.29 0.38 16 30 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 31 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.40 2.86 8.26 -40.82 -0.34 2.52 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.38 9.90 7.67 -40.82 -0.31 9.58 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -35.18 350.49 -7.87 -43.05 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.82 Total: 5.24 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.63 Total: -0.66 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.08 Total: -58.02 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.60 Total: -12.15 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.18 -7.87 -43.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166350298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.891 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds