Wall clock time and date at job start Tue Mar 31 2020 03:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99740 * 2 1 4 4 H 1.48504 * 109.46693 * 269.99801 * 3 2 1 5 5 H 1.48491 * 109.47333 * 29.99893 * 3 2 1 6 6 H 1.48501 * 109.47231 * 150.00534 * 3 2 1 7 7 C 1.38807 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00303 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00493 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47441 * 174.37128 * 10 9 7 12 12 C 1.52995 * 115.54910 * 294.95163 * 11 10 9 13 13 C 1.53005 * 109.46814 * 279.32421 * 12 11 10 14 14 N 1.46503 * 109.46763 * 175.46147 * 13 12 11 15 15 C 1.34780 * 119.99850 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99968 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.99879 * 180.27137 * 15 14 13 18 18 C 1.50708 * 109.47107 * 179.72158 * 17 15 14 19 19 N 1.33233 * 125.52598 * 269.69688 * 18 17 15 20 20 C 1.30830 * 109.82963 * 179.85560 * 19 18 17 21 21 N 1.34438 * 108.07484 * 0.39967 * 20 19 18 22 22 H 0.97002 * 126.82168 * 179.79400 * 21 20 19 23 23 N 1.30711 * 125.52295 * 89.99950 * 18 17 15 24 24 C 1.53008 * 117.51683 * 80.65167 * 11 10 9 25 25 C 1.52999 * 117.49575 * 149.27775 * 11 10 9 26 26 H 0.96996 * 119.99952 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00127 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47071 * 54.36938 * 10 9 7 29 29 H 1.09009 * 109.46773 * 294.37176 * 10 9 7 30 30 H 1.09004 * 109.47104 * 159.32709 * 12 11 10 31 31 H 1.08996 * 109.47612 * 39.32037 * 12 11 10 32 32 H 1.08988 * 109.47347 * 55.45936 * 13 12 11 33 33 H 1.09001 * 109.46956 * 295.45320 * 13 12 11 34 34 H 0.96994 * 120.00328 * 359.97438 * 14 13 12 35 35 H 1.09006 * 109.47304 * 299.72281 * 17 15 14 36 36 H 1.08996 * 109.47330 * 59.72347 * 17 15 14 37 37 H 1.07999 * 125.96878 * 180.12227 * 20 19 18 38 38 H 1.08995 * 117.49426 * 214.97109 * 24 11 10 39 39 H 1.09001 * 117.49329 * 359.97438 * 24 11 10 40 40 H 1.08991 * 117.50308 * 359.97438 * 25 11 10 41 41 H 1.09004 * 117.49389 * 145.00090 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0027 11 6 1.0700 -4.8161 0.1453 12 6 0.3083 -4.8748 1.4708 13 6 1.1964 -5.5120 2.5415 14 7 0.5090 -5.4700 3.8345 15 6 1.1051 -5.9776 4.9315 16 8 2.2105 -6.4697 4.8481 17 6 0.3955 -5.9399 6.2604 18 6 1.2681 -6.5720 7.3140 19 7 1.2669 -7.8616 7.6487 20 6 2.1451 -8.0755 8.5946 21 7 2.7295 -6.9024 8.8942 22 1 3.4184 -6.7494 9.5597 23 7 2.1450 -5.9429 8.0515 24 6 0.3325 -5.2752 -1.1143 25 6 1.4401 -6.1451 -0.5164 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0023 28 1 2.7583 -3.6713 0.8380 29 1 2.6071 -3.7602 -0.9334 30 1 -0.5946 -5.4722 1.3449 31 1 0.0361 -3.8652 1.7785 32 1 2.1343 -4.9613 2.6105 33 1 1.4023 -6.5482 2.2731 34 1 -0.3749 -5.0761 3.9013 35 1 0.1889 -4.9048 6.5327 36 1 -0.5424 -6.4904 6.1872 37 1 2.3597 -9.0274 9.0575 38 1 -0.6953 -5.6190 -0.9984 39 1 0.5509 -4.7509 -2.0446 40 1 2.3872 -6.1934 -1.0535 41 1 1.1408 -7.0612 -0.0072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167694430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:25 Heat of formation + Delta-G solvation = 79.914050 kcal Electronic energy + Delta-G solvation = -22556.056520 eV Core-core repulsion = 19087.806822 eV Total energy + Delta-G solvation = -3468.249698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.32735 -39.59415 -38.20576 -34.79868 -33.88548 -33.52614 -31.94418 -30.76453 -30.41814 -28.65574 -25.92024 -23.60710 -22.99446 -22.72161 -21.84483 -21.18476 -20.15629 -18.66634 -18.43375 -17.18842 -16.94384 -16.04308 -15.82958 -15.37763 -15.26338 -15.00586 -14.41698 -14.27701 -13.71327 -13.52209 -13.39794 -13.06605 -12.68535 -12.38604 -12.27805 -12.13543 -11.85151 -11.39941 -11.09058 -10.92898 -10.82275 -10.56754 -10.41730 -10.28588 -10.13669 -10.06198 -9.88113 -9.73176 -9.59228 -9.28878 -8.96337 -8.82081 -6.87414 -5.73755 -3.01340 1.37932 2.39901 2.57040 2.67128 3.31309 3.45708 3.51107 3.52623 3.85401 4.09774 4.38000 4.63768 4.64256 4.82137 5.06184 5.13781 5.16067 5.19994 5.26548 5.36940 5.57278 5.62415 5.72091 5.81325 5.94894 5.95320 6.12693 6.20494 6.23891 6.25975 6.46796 6.49338 6.49947 6.61233 6.76893 6.79839 6.87992 7.52890 7.73346 7.83164 8.25049 8.45605 9.57220 10.15666 10.51633 11.49154 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.003107 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.011169 B = 9009.378195 C =10310.021019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.188 3.812 11 C -0.119 4.119 12 C -0.091 4.091 13 C 0.126 3.874 14 N -0.725 5.725 15 C 0.520 3.480 16 O -0.534 6.534 17 C -0.051 4.051 18 C 0.250 3.750 19 N -0.535 5.535 20 C 0.261 3.739 21 N -0.484 5.484 22 H 0.442 0.558 23 N -0.302 5.302 24 C -0.164 4.164 25 C -0.178 4.178 26 H 0.254 0.746 27 H 0.385 0.615 28 H 0.026 0.974 29 H 0.016 0.984 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.402 0.598 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.223 0.777 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 -17.604 14.812 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.129 4.129 13 C 0.003 3.997 14 N -0.377 5.377 15 C 0.304 3.696 16 O -0.410 6.410 17 C -0.094 4.094 18 C -0.033 4.033 19 N -0.264 5.264 20 C -0.038 4.038 21 N -0.202 5.202 22 H 0.287 0.713 23 N -0.131 5.131 24 C -0.202 4.202 25 C -0.215 4.215 26 H 0.064 0.936 27 H 0.218 0.782 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.236 0.764 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.239 0.761 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.106 -17.321 14.519 22.602 hybrid contribution 0.327 1.003 0.557 1.193 sum 0.433 -16.318 15.076 22.221 Atomic orbital electron populations 1.69659 1.05040 1.25525 1.58054 1.24706 0.95514 0.97570 1.03208 0.86208 0.78699 0.83947 0.77480 1.21801 1.21806 1.20798 1.19237 0.91026 0.84198 1.42304 0.91302 1.42288 1.05894 0.99634 1.89304 1.20182 0.91925 0.84211 0.97678 1.21566 1.01725 0.95965 0.92757 1.21256 0.96836 1.02328 0.92439 1.21360 0.96422 1.00957 0.80951 1.45949 1.21552 1.61674 1.08508 1.20111 0.86241 0.78120 0.85090 1.90731 1.19831 1.44591 1.85886 1.19918 0.97587 1.03179 0.88675 1.23301 0.95280 0.88345 0.96387 1.70342 1.23370 1.17044 1.15598 1.26054 0.90802 0.92770 0.94193 1.48086 1.33740 1.06396 1.31995 0.71308 1.78020 1.13345 1.13810 1.07896 1.22964 0.96448 1.03093 0.97654 1.22974 1.00028 0.94098 1.04445 0.93607 0.78150 0.95578 0.96598 0.91885 0.89387 0.91011 0.91764 0.76369 0.86231 0.85945 0.76124 0.89303 0.88631 0.88990 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.28 5.30 -59.91 -0.32 -18.59 16 10 C 0.19 3.84 6.10 -4.04 -0.02 3.81 16 11 C -0.12 -1.92 1.52 -154.51 -0.23 -2.15 16 12 C -0.09 -1.31 5.24 -26.73 -0.14 -1.45 16 13 C 0.13 1.81 5.51 -4.04 -0.02 1.78 16 14 N -0.73 -8.95 5.56 -60.29 -0.33 -9.29 16 15 C 0.52 7.26 7.82 -10.99 -0.09 7.17 16 16 O -0.53 -9.86 16.03 5.55 0.09 -9.77 16 17 C -0.05 -0.54 6.33 -29.03 -0.18 -0.72 16 18 C 0.25 3.24 6.63 -156.86 -1.04 2.20 16 19 N -0.54 -6.50 11.19 -11.97 -0.13 -6.64 16 20 C 0.26 2.10 13.13 -90.65 -1.19 0.91 16 21 N -0.48 -4.14 7.45 29.53 0.22 -3.92 16 22 H 0.44 2.00 8.96 -182.34 -1.63 0.36 16 23 N -0.30 -3.93 12.80 32.42 0.41 -3.52 16 24 C -0.16 -2.43 9.90 -26.73 -0.26 -2.70 16 25 C -0.18 -2.42 9.57 -26.73 -0.26 -2.67 16 26 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.38 10.08 7.46 -40.82 -0.30 9.78 16 28 H 0.03 0.56 7.69 -51.93 -0.40 0.16 16 29 H 0.02 0.34 8.09 -51.92 -0.42 -0.08 16 30 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 31 H 0.09 1.48 7.64 -51.93 -0.40 1.08 16 32 H 0.07 1.21 7.69 -51.94 -0.40 0.81 16 33 H 0.06 0.91 7.80 -51.93 -0.41 0.51 16 34 H 0.40 3.78 8.47 -40.82 -0.35 3.44 16 35 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.22 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 39 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.09 1.08 7.98 -51.93 -0.41 0.67 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -38.06 354.04 -9.93 -47.98 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -7.21 Total: 9.30 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.69 Total: -1.14 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: 0.57 Total: -69.31 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.06 -9.93 -47.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167694430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.896 kcal (2) G-P(sol) polarization free energy of solvation -38.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds