Wall clock time and date at job start Tue Mar 31 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99740 * 2 1 4 4 H 1.48504 * 109.46693 * 269.99801 * 3 2 1 5 5 H 1.48491 * 109.47333 * 29.99893 * 3 2 1 6 6 H 1.48501 * 109.47231 * 150.00534 * 3 2 1 7 7 C 1.38807 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00303 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00493 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47441 * 174.37128 * 10 9 7 12 12 C 1.52995 * 115.54910 * 294.95163 * 11 10 9 13 13 C 1.53005 * 109.46814 * 279.32421 * 12 11 10 14 14 N 1.46503 * 109.46763 * 175.46147 * 13 12 11 15 15 C 1.34780 * 119.99850 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99968 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.99879 * 180.27137 * 15 14 13 18 18 C 1.50708 * 109.47107 * 179.72158 * 17 15 14 19 19 N 1.33233 * 125.52598 * 269.69688 * 18 17 15 20 20 C 1.30830 * 109.82963 * 179.85560 * 19 18 17 21 21 N 1.34438 * 108.07484 * 0.39967 * 20 19 18 22 22 H 0.97002 * 126.82168 * 179.79400 * 21 20 19 23 23 N 1.30711 * 125.52295 * 89.99950 * 18 17 15 24 24 C 1.53008 * 117.51683 * 80.65167 * 11 10 9 25 25 C 1.52999 * 117.49575 * 149.27775 * 11 10 9 26 26 H 0.96996 * 119.99952 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00127 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47071 * 54.36938 * 10 9 7 29 29 H 1.09009 * 109.46773 * 294.37176 * 10 9 7 30 30 H 1.09004 * 109.47104 * 159.32709 * 12 11 10 31 31 H 1.08996 * 109.47612 * 39.32037 * 12 11 10 32 32 H 1.08988 * 109.47347 * 55.45936 * 13 12 11 33 33 H 1.09001 * 109.46956 * 295.45320 * 13 12 11 34 34 H 0.96994 * 120.00328 * 359.97438 * 14 13 12 35 35 H 1.09006 * 109.47304 * 299.72281 * 17 15 14 36 36 H 1.08996 * 109.47330 * 59.72347 * 17 15 14 37 37 H 1.07999 * 125.96878 * 180.12227 * 20 19 18 38 38 H 1.08995 * 117.49426 * 214.97109 * 24 11 10 39 39 H 1.09001 * 117.49329 * 359.97438 * 24 11 10 40 40 H 1.08991 * 117.50308 * 359.97438 * 25 11 10 41 41 H 1.09004 * 117.49389 * 145.00090 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0027 11 6 1.0700 -4.8161 0.1453 12 6 0.3083 -4.8748 1.4708 13 6 1.1964 -5.5120 2.5415 14 7 0.5090 -5.4700 3.8345 15 6 1.1051 -5.9776 4.9315 16 8 2.2105 -6.4697 4.8481 17 6 0.3955 -5.9399 6.2604 18 6 1.2681 -6.5720 7.3140 19 7 1.2669 -7.8616 7.6487 20 6 2.1451 -8.0755 8.5946 21 7 2.7295 -6.9024 8.8942 22 1 3.4184 -6.7494 9.5597 23 7 2.1450 -5.9429 8.0515 24 6 0.3325 -5.2752 -1.1143 25 6 1.4401 -6.1451 -0.5164 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0023 28 1 2.7583 -3.6713 0.8380 29 1 2.6071 -3.7602 -0.9334 30 1 -0.5946 -5.4722 1.3449 31 1 0.0361 -3.8652 1.7785 32 1 2.1343 -4.9613 2.6105 33 1 1.4023 -6.5482 2.2731 34 1 -0.3749 -5.0761 3.9013 35 1 0.1889 -4.9048 6.5327 36 1 -0.5424 -6.4904 6.1872 37 1 2.3597 -9.0274 9.0575 38 1 -0.6953 -5.6190 -0.9984 39 1 0.5509 -4.7509 -2.0446 40 1 2.3872 -6.1934 -1.0535 41 1 1.1408 -7.0612 -0.0072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167694430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:24 Heat of formation + Delta-G solvation = 51.844132 kcal Electronic energy + Delta-G solvation = -22557.273723 eV Core-core repulsion = 19087.806822 eV Total energy + Delta-G solvation = -3469.466901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.07367 -40.71689 -39.49566 -36.11190 -35.70292 -34.33169 -32.77260 -32.74119 -31.49172 -29.59903 -27.77453 -24.80066 -24.57344 -23.73439 -23.02756 -22.19853 -21.11450 -19.94413 -19.27562 -19.01035 -18.11035 -17.10429 -16.92690 -16.65005 -16.21021 -16.17713 -16.03418 -15.51732 -15.13932 -14.88637 -14.61659 -14.39418 -14.17275 -13.82225 -13.19673 -13.14797 -13.05055 -12.98125 -12.79235 -12.52237 -12.26142 -12.13761 -11.92283 -11.82531 -11.29042 -11.10039 -11.07642 -10.99221 -10.88807 -10.67202 -10.51676 -10.09023 -8.96591 -7.94172 -5.21535 0.65093 1.46662 1.47693 1.56250 1.60448 1.70725 1.85834 2.36516 2.54818 2.91843 3.16940 3.38591 3.67502 3.79431 3.86285 3.91839 4.00443 4.11483 4.17003 4.29138 4.43033 4.45907 4.51056 4.56933 4.67754 4.85559 4.95233 4.98726 5.09805 5.19781 5.24158 5.29914 5.34246 5.35818 5.40622 5.45850 5.49452 6.26622 6.28478 6.54127 7.09186 7.22849 7.35691 8.11616 8.38257 9.28985 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.003107 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.011169 B = 9009.378195 C =10310.021019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.734 5.734 10 C 0.188 3.812 11 C -0.140 4.140 12 C -0.076 4.076 13 C 0.135 3.865 14 N -0.714 5.714 15 C 0.518 3.482 16 O -0.585 6.585 17 C -0.046 4.046 18 C 0.232 3.768 19 N -0.573 5.573 20 C 0.275 3.725 21 N -0.477 5.477 22 H 0.457 0.543 23 N -0.345 5.345 24 C -0.162 4.162 25 C -0.152 4.152 26 H 0.252 0.748 27 H 0.378 0.622 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.418 0.582 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.274 0.726 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 -19.102 15.605 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.377 5.377 10 C 0.062 3.938 11 C -0.141 4.141 12 C -0.114 4.114 13 C 0.011 3.989 14 N -0.366 5.366 15 C 0.304 3.696 16 O -0.465 6.465 17 C -0.088 4.088 18 C -0.051 4.051 19 N -0.302 5.302 20 C -0.024 4.024 21 N -0.196 5.196 22 H 0.306 0.694 23 N -0.176 5.176 24 C -0.199 4.199 25 C -0.190 4.190 26 H 0.061 0.939 27 H 0.210 0.790 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.255 0.745 35 H 0.156 0.844 36 H 0.170 0.830 37 H 0.290 0.710 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.265 -18.825 15.328 24.278 hybrid contribution 0.527 1.387 0.336 1.521 sum 0.262 -17.439 15.665 23.443 Atomic orbital electron populations 1.69796 1.06306 1.26002 1.59374 1.25468 0.96412 1.00700 1.03713 0.85209 0.77676 0.79875 0.77420 1.21410 1.21867 1.19969 1.19581 0.91271 0.85615 1.41365 0.91415 1.42412 1.05660 1.00517 1.89091 1.20223 0.92693 0.84262 0.96664 1.21420 1.02271 0.96002 0.94425 1.21105 0.97602 1.01272 0.91425 1.21142 0.95241 1.00601 0.81877 1.45850 1.22030 1.61098 1.07671 1.20705 0.85662 0.76935 0.86255 1.90700 1.22106 1.46945 1.86716 1.20016 0.97907 1.04755 0.86147 1.23667 0.95620 0.88964 0.96841 1.70332 1.25419 1.16936 1.17516 1.27050 0.88772 0.93968 0.92560 1.48025 1.33851 1.06015 1.31719 0.69424 1.77898 1.14356 1.15981 1.09315 1.23011 0.97981 1.02956 0.95977 1.23054 0.99720 0.93457 1.02733 0.93946 0.78992 0.96733 0.97090 0.88867 0.92062 0.94363 0.91166 0.74492 0.84403 0.82995 0.71028 0.87162 0.90226 0.88779 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.67 13.06 21.65 0.28 -58.39 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 46.85 29.55 68.60 2.03 48.87 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 9 N -0.73 -37.65 5.30 -343.44 -1.82 -39.47 16 10 C 0.19 7.83 6.10 86.38 0.53 8.36 16 11 C -0.14 -4.41 1.52 -52.18 -0.08 -4.48 16 12 C -0.08 -2.13 5.24 30.59 0.16 -1.97 16 13 C 0.14 3.81 5.51 86.38 0.48 4.29 16 14 N -0.71 -17.08 5.56 -463.06 -2.57 -19.65 16 15 C 0.52 14.28 7.82 87.65 0.69 14.96 16 16 O -0.58 -21.91 16.03 -3.04 -0.05 -21.95 16 17 C -0.05 -0.93 6.33 29.10 0.18 -0.75 16 18 C 0.23 5.87 6.63 138.64 0.92 6.79 16 19 N -0.57 -13.20 11.19 -191.80 -2.15 -15.35 16 20 C 0.27 3.85 13.13 180.36 2.37 6.22 16 21 N -0.48 -7.56 7.45 -60.49 -0.45 -8.01 16 22 H 0.46 3.51 8.96 -213.10 -1.91 1.60 16 23 N -0.35 -8.90 12.80 -51.33 -0.66 -9.56 16 24 C -0.16 -4.51 9.90 30.60 0.30 -4.21 16 25 C -0.15 -3.79 9.57 30.59 0.29 -3.50 16 26 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 27 H 0.38 20.22 7.46 -92.71 -0.69 19.53 16 28 H 0.01 0.64 7.69 -2.39 -0.02 0.62 16 29 H 0.01 0.48 8.09 -2.38 -0.02 0.46 16 30 H 0.09 2.05 7.94 -2.38 -0.02 2.03 16 31 H 0.06 2.06 7.64 -2.39 -0.02 2.04 16 32 H 0.04 1.34 7.69 -2.39 -0.02 1.32 16 33 H 0.07 1.91 7.80 -2.39 -0.02 1.89 16 34 H 0.42 7.26 8.47 -92.71 -0.79 6.47 16 35 H 0.14 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.27 0.34 8.06 -2.91 -0.02 0.32 16 38 H 0.11 2.60 8.08 -2.39 -0.02 2.58 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.11 2.34 7.98 -2.39 -0.02 2.32 16 Total: -1.00 -84.49 354.04 -0.55 -85.04 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -2.31 Total: 29.60 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 7.14 Total: 8.86 kcal Atomic # 7 Polarization: -143.06 SS G_CDS: -7.36 Total: -150.43 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -84.49 -0.55 -85.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167694430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.882 kcal (2) G-P(sol) polarization free energy of solvation -84.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds