Wall clock time and date at job start Tue Mar 31 2020 03:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86806 * 119.99638 * 2 1 4 4 H 1.48495 * 109.47369 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46608 * 120.00488 * 3 2 1 6 6 H 1.48491 * 109.47099 * 240.00236 * 3 2 1 7 7 C 1.38627 * 119.99799 * 179.73378 * 2 1 3 8 8 H 1.08003 * 119.99216 * 180.02562 * 7 2 1 9 9 O 1.34803 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.35807 * 117.00006 * 174.94217 * 9 7 2 11 11 C 1.39441 * 120.40979 * 5.50185 * 10 9 7 12 12 C 1.38227 * 118.44148 * 179.97438 * 11 10 9 13 13 C 1.39112 * 119.17714 * 0.02562 * 12 11 10 14 14 N 1.39394 * 119.62502 * 179.97438 * 13 12 11 15 15 C 1.37715 * 120.00111 * 185.11727 * 14 13 12 16 16 N 1.30319 * 119.99587 * 354.88698 * 15 14 13 17 17 N 1.37494 * 119.99798 * 174.88573 * 15 14 13 18 18 C 1.46502 * 119.99467 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47031 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47326 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47283 * 180.02562 * 20 19 18 22 22 N 1.46901 * 109.47481 * 179.97438 * 21 20 19 23 23 N 1.32360 * 120.74759 * 359.97438 * 13 12 11 24 24 C 1.31895 * 121.70286 * 359.74302 * 23 13 12 25 25 H 0.96999 * 119.99566 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.77597 * 359.97438 * 11 10 9 27 27 H 1.08003 * 120.40993 * 179.97438 * 12 11 10 28 28 H 0.97006 * 119.99774 * 5.11756 * 14 13 12 29 29 H 0.97002 * 119.99271 * 180.02562 * 16 15 14 30 30 H 0.96999 * 120.00531 * 359.97438 * 17 15 14 31 31 H 1.08993 * 109.47604 * 299.99518 * 18 17 15 32 32 H 1.09001 * 109.47304 * 59.99836 * 18 17 15 33 33 H 1.09004 * 109.47432 * 300.00055 * 19 18 17 34 34 H 1.09001 * 109.46966 * 59.99928 * 19 18 17 35 35 H 1.09007 * 109.47262 * 300.00061 * 20 19 18 36 36 H 1.09001 * 109.47255 * 59.99984 * 20 19 18 37 37 H 1.09004 * 109.47134 * 299.99727 * 21 20 19 38 38 H 1.09001 * 109.47306 * 59.99626 * 21 20 19 39 39 H 1.00907 * 110.99891 * 56.04399 * 22 21 20 40 40 H 1.00898 * 111.00595 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.62815 * 180.27049 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 1.2848 2.7465 0.0006 5 1 3.1036 1.6964 1.2125 6 1 3.1034 1.6966 -1.2125 7 6 2.0089 -1.2006 0.0056 8 1 3.0890 -1.2004 0.0060 9 8 1.3349 -2.3680 0.0115 10 6 2.0704 -3.5051 -0.0899 11 6 3.4636 -3.4478 -0.0792 12 6 4.1719 -4.6302 -0.1844 13 6 3.4764 -5.8297 -0.2971 14 7 4.1813 -7.0275 -0.4042 15 6 3.5051 -8.2073 -0.6219 16 7 2.2020 -8.2197 -0.6284 17 7 4.2049 -9.3719 -0.8324 18 6 3.4856 -10.6271 -1.0634 19 6 4.4917 -11.7614 -1.2681 20 6 3.7405 -13.0721 -1.5100 21 6 4.7467 -14.2065 -1.7140 22 7 4.0255 -15.4651 -1.9457 23 7 2.1529 -5.8464 -0.3038 24 6 1.4452 -4.7383 -0.1999 25 1 -0.4849 -0.8401 0.0004 26 1 3.9772 -2.5019 0.0091 27 1 5.2519 -4.6227 -0.1799 28 1 5.1482 -7.0300 -0.3254 29 1 1.7258 -9.0508 -0.7814 30 1 5.1749 -9.3626 -0.8279 31 1 2.8571 -10.8497 -0.2011 32 1 2.8620 -10.5302 -1.9521 33 1 5.1200 -11.5386 -2.1306 34 1 5.1156 -11.8583 -0.3795 35 1 3.1120 -13.2952 -0.6477 36 1 3.1169 -12.9748 -2.3987 37 1 5.3755 -13.9837 -2.5761 38 1 5.3700 -14.3036 -0.8251 39 1 3.3917 -15.3803 -2.7263 40 1 4.6685 -16.2303 -2.0839 41 1 0.3664 -4.7913 -0.2047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167880402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:26 Heat of formation + Delta-G solvation = 47.859485 kcal Electronic energy + Delta-G solvation = -21924.317779 eV Core-core repulsion = 18454.678090 eV Total energy + Delta-G solvation = -3469.639688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.79906 -38.57949 -37.35048 -36.47606 -34.56810 -32.59661 -32.12503 -31.31344 -30.52638 -28.37644 -26.94633 -24.99710 -23.27994 -22.77555 -21.81904 -21.68474 -20.12704 -18.39012 -18.09948 -17.27248 -16.63643 -16.35988 -16.02376 -15.58022 -15.22894 -15.09315 -14.57754 -14.15251 -14.02270 -13.89193 -13.66389 -13.56395 -13.37827 -12.74794 -12.41947 -12.33742 -12.12577 -11.89263 -11.67222 -11.47702 -11.13731 -10.88491 -10.53614 -10.29882 -9.74648 -9.52833 -9.25556 -9.08472 -8.94261 -8.63637 -8.13938 -8.02336 -6.87043 -6.75003 -4.02624 1.99740 2.31967 2.73445 3.24362 3.28530 3.43583 3.45987 3.84172 4.08652 4.14345 4.34446 4.44832 4.74987 4.78352 4.84518 4.92772 5.10421 5.17518 5.20661 5.23630 5.36510 5.38355 5.47536 5.64857 5.68341 5.74578 5.79622 5.93213 6.11246 6.42392 6.56288 6.59922 6.65979 6.86623 7.01024 7.13940 7.18594 7.48186 7.72081 8.09762 8.40833 8.89846 8.95933 9.19794 9.62229 10.69142 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.063583 B = 0.002089 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.264967 B =13399.662369 C =13765.762678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.010 3.990 3 Si 1.096 2.904 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.472 4.472 8 H 0.081 0.919 9 O -0.198 6.198 10 C 0.082 3.918 11 C -0.169 4.169 12 C -0.160 4.160 13 C 0.279 3.721 14 N -0.646 5.646 15 C 0.608 3.392 16 N -0.743 5.743 17 N -0.781 5.781 18 C 0.134 3.866 19 C -0.125 4.125 20 C -0.116 4.116 21 C 0.061 3.939 22 N -0.854 5.854 23 N -0.405 5.405 24 C 0.052 3.948 25 H 0.283 0.717 26 H 0.139 0.861 27 H 0.117 0.883 28 H 0.411 0.589 29 H 0.323 0.677 30 H 0.385 0.615 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.341 0.659 40 H 0.342 0.658 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.116 -22.996 -3.647 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.196 4.196 3 Si 0.920 3.080 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.099 0.901 9 O -0.101 6.101 10 C 0.027 3.973 11 C -0.195 4.195 12 C -0.184 4.184 13 C 0.049 3.951 14 N -0.283 5.283 15 C 0.240 3.760 16 N -0.385 5.385 17 N -0.429 5.429 18 C 0.009 3.991 19 C -0.164 4.164 20 C -0.155 4.155 21 C -0.070 4.070 22 N -0.383 5.383 23 N -0.118 5.118 24 C -0.109 4.109 25 H 0.093 0.907 26 H 0.156 0.844 27 H 0.135 0.865 28 H 0.246 0.754 29 H 0.140 0.860 30 H 0.217 0.783 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.934 -21.261 -2.857 24.078 hybrid contribution 2.576 -1.937 -1.031 3.384 sum 13.510 -23.198 -3.887 27.126 Atomic orbital electron populations 1.70574 1.06528 1.31750 1.42337 1.26510 0.96862 1.01060 0.95122 0.83110 0.74482 0.73440 0.76995 1.19786 1.20788 1.20809 1.22151 0.92938 0.82340 1.57399 0.90141 1.83687 1.34880 1.11807 1.79736 1.20355 0.90924 0.89042 0.97023 1.21308 0.93836 0.98317 1.06083 1.21021 0.99400 0.91268 1.06684 1.17637 0.89101 0.83456 1.04889 1.40922 1.07753 1.02194 1.77419 1.18926 0.87233 0.79539 0.90322 1.70357 1.01532 1.32017 1.34631 1.45498 1.08743 1.06246 1.82396 1.21115 0.94888 0.82395 1.00697 1.21667 0.98330 0.93805 1.02552 1.21488 0.98226 0.92814 1.02972 1.21796 0.95489 0.89462 1.00263 1.58707 1.23895 1.05978 1.49761 1.67515 1.05001 1.28004 1.11307 1.21775 0.99632 0.84766 1.04756 0.90676 0.84380 0.86495 0.75376 0.86041 0.78275 0.92202 0.92350 0.91354 0.91108 0.90634 0.91713 0.95542 0.90963 0.84658 0.84570 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.26 13.70 55.48 0.76 -25.50 16 2 C 0.01 0.28 5.49 -17.51 -0.10 0.18 16 3 Si 1.10 23.52 29.92 -169.99 -5.09 18.44 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.47 -13.18 9.50 30.88 0.29 -12.89 16 8 H 0.08 2.09 5.26 -52.48 -0.28 1.81 16 9 O -0.20 -5.56 9.17 -0.05 0.00 -5.56 16 10 C 0.08 2.01 6.67 -38.96 -0.26 1.75 16 11 C -0.17 -3.63 9.26 -39.14 -0.36 -4.00 16 12 C -0.16 -2.91 9.93 -39.26 -0.39 -3.30 16 13 C 0.28 5.30 7.44 -154.68 -1.15 4.15 16 14 N -0.65 -9.49 5.51 -12.68 -0.07 -9.56 16 15 C 0.61 8.95 8.68 -319.77 -2.78 6.18 16 16 N -0.74 -13.08 11.36 30.19 0.34 -12.73 16 17 N -0.78 -7.77 5.67 -61.73 -0.35 -8.12 16 18 C 0.13 1.12 5.02 -4.04 -0.02 1.10 16 19 C -0.13 -0.71 5.33 -26.73 -0.14 -0.85 16 20 C -0.12 -0.65 5.47 -26.73 -0.15 -0.80 16 21 C 0.06 0.32 6.79 -3.82 -0.03 0.29 16 22 N -0.85 -4.51 9.62 -10.37 -0.10 -4.61 16 23 N -0.41 -8.80 7.70 -12.20 -0.09 -8.90 16 24 C 0.05 1.19 11.14 -17.35 -0.19 1.00 16 25 H 0.28 8.65 7.97 -40.82 -0.33 8.32 16 26 H 0.14 2.92 5.76 -52.49 -0.30 2.62 16 27 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 28 H 0.41 4.34 8.80 -40.82 -0.36 3.98 16 29 H 0.32 5.04 7.14 -40.82 -0.29 4.75 16 30 H 0.38 2.87 8.58 -40.82 -0.35 2.52 16 31 H 0.06 0.54 7.97 -51.93 -0.41 0.13 16 32 H 0.06 0.53 7.97 -51.93 -0.41 0.11 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.03 0.13 8.14 -51.93 -0.42 -0.30 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.34 1.47 8.99 -39.29 -0.35 1.12 16 40 H 0.34 1.30 9.08 -39.29 -0.36 0.94 16 41 H 0.15 3.24 8.06 -52.48 -0.42 2.82 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -34.33 347.17 -10.25 -44.58 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -5.62 Total: 13.92 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -5.27 Total: -7.18 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: 0.49 Total: -69.43 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: 0.00 Total: -5.56 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.09 Total: 18.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.33 -10.25 -44.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167880402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.443 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds