Wall clock time and date at job start Tue Mar 31 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86806 * 119.99638 * 2 1 4 4 H 1.48495 * 109.47369 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46608 * 120.00488 * 3 2 1 6 6 H 1.48491 * 109.47099 * 240.00236 * 3 2 1 7 7 C 1.38627 * 119.99799 * 179.73378 * 2 1 3 8 8 H 1.08003 * 119.99216 * 180.02562 * 7 2 1 9 9 O 1.34803 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.35807 * 117.00006 * 174.94217 * 9 7 2 11 11 C 1.39441 * 120.40979 * 5.50185 * 10 9 7 12 12 C 1.38227 * 118.44148 * 179.97438 * 11 10 9 13 13 C 1.39112 * 119.17714 * 0.02562 * 12 11 10 14 14 N 1.39394 * 119.62502 * 179.97438 * 13 12 11 15 15 C 1.37715 * 120.00111 * 185.11727 * 14 13 12 16 16 N 1.30319 * 119.99587 * 354.88698 * 15 14 13 17 17 N 1.37494 * 119.99798 * 174.88573 * 15 14 13 18 18 C 1.46502 * 119.99467 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47031 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47326 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47283 * 180.02562 * 20 19 18 22 22 N 1.46901 * 109.47481 * 179.97438 * 21 20 19 23 23 N 1.32360 * 120.74759 * 359.97438 * 13 12 11 24 24 C 1.31895 * 121.70286 * 359.74302 * 23 13 12 25 25 H 0.96999 * 119.99566 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.77597 * 359.97438 * 11 10 9 27 27 H 1.08003 * 120.40993 * 179.97438 * 12 11 10 28 28 H 0.97006 * 119.99774 * 5.11756 * 14 13 12 29 29 H 0.97002 * 119.99271 * 180.02562 * 16 15 14 30 30 H 0.96999 * 120.00531 * 359.97438 * 17 15 14 31 31 H 1.08993 * 109.47604 * 299.99518 * 18 17 15 32 32 H 1.09001 * 109.47304 * 59.99836 * 18 17 15 33 33 H 1.09004 * 109.47432 * 300.00055 * 19 18 17 34 34 H 1.09001 * 109.46966 * 59.99928 * 19 18 17 35 35 H 1.09007 * 109.47262 * 300.00061 * 20 19 18 36 36 H 1.09001 * 109.47255 * 59.99984 * 20 19 18 37 37 H 1.09004 * 109.47134 * 299.99727 * 21 20 19 38 38 H 1.09001 * 109.47306 * 59.99626 * 21 20 19 39 39 H 1.00907 * 110.99891 * 56.04399 * 22 21 20 40 40 H 1.00898 * 111.00595 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.62815 * 180.27049 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 1.2848 2.7465 0.0006 5 1 3.1036 1.6964 1.2125 6 1 3.1034 1.6966 -1.2125 7 6 2.0089 -1.2006 0.0056 8 1 3.0890 -1.2004 0.0060 9 8 1.3349 -2.3680 0.0115 10 6 2.0704 -3.5051 -0.0899 11 6 3.4636 -3.4478 -0.0792 12 6 4.1719 -4.6302 -0.1844 13 6 3.4764 -5.8297 -0.2971 14 7 4.1813 -7.0275 -0.4042 15 6 3.5051 -8.2073 -0.6219 16 7 2.2020 -8.2197 -0.6284 17 7 4.2049 -9.3719 -0.8324 18 6 3.4856 -10.6271 -1.0634 19 6 4.4917 -11.7614 -1.2681 20 6 3.7405 -13.0721 -1.5100 21 6 4.7467 -14.2065 -1.7140 22 7 4.0255 -15.4651 -1.9457 23 7 2.1529 -5.8464 -0.3038 24 6 1.4452 -4.7383 -0.1999 25 1 -0.4849 -0.8401 0.0004 26 1 3.9772 -2.5019 0.0091 27 1 5.2519 -4.6227 -0.1799 28 1 5.1482 -7.0300 -0.3254 29 1 1.7258 -9.0508 -0.7814 30 1 5.1749 -9.3626 -0.8279 31 1 2.8571 -10.8497 -0.2011 32 1 2.8620 -10.5302 -1.9521 33 1 5.1200 -11.5386 -2.1306 34 1 5.1156 -11.8583 -0.3795 35 1 3.1120 -13.2952 -0.6477 36 1 3.1169 -12.9748 -2.3987 37 1 5.3755 -13.9837 -2.5761 38 1 5.3700 -14.3036 -0.8251 39 1 3.3917 -15.3803 -2.7263 40 1 4.6685 -16.2303 -2.0839 41 1 0.3664 -4.7913 -0.2047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167880402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:25 Heat of formation + Delta-G solvation = 23.483739 kcal Electronic energy + Delta-G solvation = -21925.374790 eV Core-core repulsion = 18454.678090 eV Total energy + Delta-G solvation = -3470.696700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.44158 -39.90717 -38.79601 -37.25625 -35.59260 -34.24822 -33.46969 -32.82207 -31.59913 -29.91165 -27.79432 -26.87627 -24.68758 -24.01007 -23.14110 -22.18414 -21.43233 -20.23163 -19.37191 -18.81044 -17.94563 -17.22281 -17.09598 -16.69798 -16.28473 -15.98409 -15.66181 -15.56154 -15.48282 -15.40840 -15.10341 -14.96083 -14.54613 -14.19005 -13.64720 -13.57965 -13.13928 -12.65754 -12.54812 -12.47022 -12.41573 -12.01536 -11.91497 -11.68038 -11.64187 -10.96565 -10.65596 -10.55207 -10.37099 -9.63231 -9.60788 -9.17841 -8.89285 -8.51375 -6.17408 0.34103 0.61651 1.52953 1.60643 1.65671 1.82643 2.18502 2.40072 2.90466 2.97218 3.21938 3.36139 3.60274 3.77723 3.86874 3.96453 4.07885 4.15473 4.27861 4.29693 4.36256 4.43711 4.64600 4.68262 4.73771 4.86628 4.92720 4.95451 5.00137 5.27298 5.29461 5.32507 5.44375 5.51214 5.71284 6.00219 6.22267 6.23344 6.40904 6.55968 6.90170 7.02448 7.36159 7.67046 7.98891 8.55847 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.063583 B = 0.002089 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.264967 B =13399.662369 C =13765.762678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.046 4.046 3 Si 1.146 2.854 4 H -0.278 1.278 5 H -0.258 1.258 6 H -0.259 1.259 7 C -0.486 4.486 8 H 0.096 0.904 9 O -0.246 6.246 10 C 0.046 3.954 11 C -0.164 4.164 12 C -0.144 4.144 13 C 0.296 3.704 14 N -0.632 5.632 15 C 0.608 3.392 16 N -0.792 5.792 17 N -0.762 5.762 18 C 0.133 3.867 19 C -0.112 4.112 20 C -0.113 4.113 21 C 0.062 3.938 22 N -0.866 5.866 23 N -0.424 5.424 24 C 0.043 3.957 25 H 0.260 0.740 26 H 0.144 0.856 27 H 0.172 0.828 28 H 0.434 0.566 29 H 0.329 0.671 30 H 0.402 0.598 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.345 0.655 40 H 0.350 0.650 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.197 -24.616 -3.994 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.242 4.242 3 Si 0.962 3.038 4 H -0.203 1.203 5 H -0.183 1.183 6 H -0.184 1.184 7 C -0.562 4.562 8 H 0.113 0.887 9 O -0.152 6.152 10 C -0.007 4.007 11 C -0.191 4.191 12 C -0.167 4.167 13 C 0.062 3.938 14 N -0.271 5.271 15 C 0.239 3.761 16 N -0.436 5.436 17 N -0.410 5.410 18 C 0.008 3.992 19 C -0.150 4.150 20 C -0.152 4.152 21 C -0.069 4.069 22 N -0.397 5.397 23 N -0.138 5.138 24 C -0.117 4.117 25 H 0.069 0.931 26 H 0.161 0.839 27 H 0.190 0.810 28 H 0.274 0.726 29 H 0.146 0.854 30 H 0.238 0.762 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 15.097 -22.994 -3.212 27.694 hybrid contribution 1.490 -1.897 -0.955 2.594 sum 16.587 -24.891 -4.167 30.200 Atomic orbital electron populations 1.70713 1.07873 1.30126 1.46665 1.28387 0.96886 1.04950 0.93971 0.82574 0.73720 0.68740 0.78805 1.20281 1.18283 1.18358 1.22600 0.93809 0.82827 1.56995 0.88663 1.83675 1.36231 1.12708 1.82602 1.20744 0.92493 0.88482 0.98971 1.21537 0.92714 1.00008 1.04864 1.21429 1.01903 0.89317 1.04078 1.18112 0.88595 0.85460 1.01598 1.40859 1.08752 1.00944 1.76563 1.18894 0.87249 0.80526 0.89425 1.70281 1.03522 1.33277 1.36525 1.45301 1.09589 1.05126 1.80965 1.21230 0.95524 0.82362 1.00035 1.21561 0.97591 0.92436 1.03413 1.21436 0.98241 0.93055 1.02421 1.21770 0.95311 0.89216 1.00586 1.58715 1.24423 1.06382 1.50202 1.67635 1.06617 1.27200 1.12370 1.21764 0.99827 0.84950 1.05127 0.93139 0.83885 0.81028 0.72584 0.85403 0.76216 0.93004 0.93048 0.90267 0.90219 0.91798 0.91811 0.94756 0.90986 0.84185 0.83707 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.66 13.70 21.61 0.30 -57.36 16 2 C -0.05 -2.61 5.49 84.82 0.47 -2.15 16 3 Si 1.15 47.28 29.92 68.60 2.05 49.33 16 4 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.49 -27.90 9.50 67.91 0.64 -27.25 16 8 H 0.10 4.94 5.26 -2.91 -0.02 4.93 16 9 O -0.25 -14.53 9.17 -23.09 -0.21 -14.74 16 10 C 0.05 2.30 6.67 22.67 0.15 2.45 16 11 C -0.16 -6.85 9.26 22.56 0.21 -6.64 16 12 C -0.14 -4.68 9.93 22.48 0.22 -4.46 16 13 C 0.30 10.41 7.44 132.94 0.99 11.39 16 14 N -0.63 -16.15 5.51 -194.03 -1.07 -17.22 16 15 C 0.61 16.27 8.68 260.43 2.26 18.53 16 16 N -0.79 -27.02 11.36 -58.39 -0.66 -27.68 16 17 N -0.76 -12.67 5.67 -349.22 -1.98 -14.65 16 18 C 0.13 1.92 5.02 86.38 0.43 2.35 16 19 C -0.11 -0.94 5.33 30.59 0.16 -0.78 16 20 C -0.11 -1.05 5.47 30.59 0.17 -0.89 16 21 C 0.06 0.52 6.79 86.30 0.59 1.10 16 22 N -0.87 -7.80 9.62 -186.71 -1.80 -9.60 16 23 N -0.42 -18.22 7.70 -192.51 -1.48 -19.70 16 24 C 0.04 2.00 11.14 84.80 0.94 2.95 16 25 H 0.26 17.09 7.97 -92.71 -0.74 16.35 16 26 H 0.14 5.79 5.76 -2.91 -0.02 5.77 16 27 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 28 H 0.43 6.85 8.80 -92.70 -0.82 6.04 16 29 H 0.33 10.12 7.14 -92.71 -0.66 9.46 16 30 H 0.40 4.23 8.58 -92.71 -0.80 3.43 16 31 H 0.05 0.86 7.97 -2.39 -0.02 0.84 16 32 H 0.05 0.85 7.97 -2.39 -0.02 0.83 16 33 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.03 0.24 8.14 -2.38 -0.02 0.22 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.35 2.51 8.99 -89.69 -0.81 1.70 16 40 H 0.35 2.12 9.08 -89.70 -0.81 1.31 16 41 H 0.14 6.63 8.06 -2.91 -0.02 6.61 16 Total: -1.00 -79.02 347.17 -0.36 -79.38 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -2.75 Total: 35.62 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 7.24 Total: -3.38 kcal Atomic # 7 Polarization: -139.51 SS G_CDS: -6.70 Total: -146.21 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.21 Total: -14.74 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.05 Total: 49.33 kcal Total: -79.02 -0.36 -79.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167880402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.863 kcal (2) G-P(sol) polarization free energy of solvation -79.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds