Wall clock time and date at job start Tue Mar 31 2020 03:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 117.00055 * 2 1 4 4 O 1.20824 * 119.99731 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99970 * 180.02562 * 3 2 1 6 6 H 1.09010 * 109.46864 * 299.99920 * 5 3 2 7 7 C 1.52996 * 109.47151 * 59.99473 * 5 3 2 8 8 C 1.53008 * 109.46782 * 185.00019 * 7 5 3 9 9 C 1.52996 * 109.46861 * 180.02562 * 8 7 5 10 10 N 1.46903 * 109.47313 * 180.02562 * 9 8 7 11 11 N 1.46493 * 109.47017 * 179.97438 * 5 3 2 12 12 C 1.38098 * 120.00114 * 84.99953 * 11 5 3 13 13 N 1.32268 * 119.90328 * 0.02562 * 12 11 5 14 14 C 1.31971 * 121.86368 * 179.72513 * 13 12 11 15 15 C 1.38692 * 121.44563 * 0.55221 * 14 13 12 16 16 C 1.38010 * 119.62499 * 359.43933 * 15 14 13 17 17 C 1.40999 * 118.28164 * 0.27782 * 16 15 14 18 18 C 1.41018 * 120.70261 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00028 * 204.88999 * 18 17 16 20 20 C 1.39949 * 120.00278 * 24.89668 * 18 17 16 21 21 N 1.30868 * 119.99726 * 14.50487 * 20 18 17 22 22 Si 1.86792 * 120.00181 * 194.50576 * 20 18 17 23 23 H 1.48504 * 109.46996 * 89.99738 * 22 20 18 24 24 H 1.48505 * 109.47354 * 209.99807 * 22 20 18 25 25 H 1.48500 * 109.47261 * 329.99896 * 22 20 18 26 26 H 1.09005 * 109.47224 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47225 * 300.00015 * 1 2 3 28 28 H 1.09001 * 109.46787 * 60.00218 * 1 2 3 29 29 H 1.08997 * 109.47311 * 305.00004 * 7 5 3 30 30 H 1.09004 * 109.47129 * 65.00613 * 7 5 3 31 31 H 1.08997 * 109.47185 * 300.00062 * 8 7 5 32 32 H 1.08997 * 109.46812 * 60.00831 * 8 7 5 33 33 H 1.09001 * 109.47352 * 300.00093 * 9 8 7 34 34 H 1.08997 * 109.47543 * 60.00001 * 9 8 7 35 35 H 1.00898 * 110.99670 * 56.04394 * 10 9 8 36 36 H 1.00902 * 111.00473 * 179.97438 * 10 9 8 37 37 H 0.96997 * 120.00084 * 264.99208 * 11 5 3 38 38 H 1.07998 * 119.27850 * 180.28728 * 14 13 12 39 39 H 1.07991 * 120.18464 * 179.70907 * 15 14 13 40 40 H 1.07996 * 120.85438 * 180.29967 * 16 15 14 41 41 H 0.97004 * 119.99967 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1129 0.5814 -1.2501 8 6 5.6415 0.5516 -1.1893 9 6 6.1881 -0.1413 -2.4391 10 7 7.6556 -0.1705 -2.3806 11 7 3.9817 2.6796 -0.0011 12 6 4.0780 3.3716 1.1901 13 7 3.7952 2.7640 2.3304 14 6 3.8793 3.3865 3.4911 15 6 4.2593 4.7179 3.5722 16 6 4.5687 5.4105 2.4193 17 6 4.4798 4.7306 1.1872 18 6 4.7848 5.3888 -0.0220 19 1 4.3544 5.0411 -0.9495 20 6 5.6454 6.4924 -0.0204 21 7 6.3851 6.7436 1.0295 22 14 5.7381 7.6067 -1.5166 23 1 4.7403 8.6985 -1.3833 24 1 7.1001 8.1904 -1.6156 25 1 5.4477 6.8174 -2.7405 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.7311 -0.4385 -1.2960 30 1 3.7952 1.1286 -2.1376 31 1 6.0232 1.5715 -1.1434 32 1 5.9591 0.0043 -0.3018 33 1 5.8063 -1.1612 -2.4855 34 1 5.8703 0.4062 -3.3264 35 1 7.9749 -0.6168 -1.5338 36 1 8.0411 -0.6239 -3.1954 37 1 4.1892 3.1237 -0.8381 38 1 3.6430 2.8486 4.3972 39 1 4.3169 5.2086 4.5325 40 1 4.8716 6.4463 2.4598 41 1 6.9814 7.5088 1.0309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167895203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:03 Heat of formation + Delta-G solvation = -80.786002 kcal Electronic energy + Delta-G solvation = -23908.215724 eV Core-core repulsion = 20400.704798 eV Total energy + Delta-G solvation = -3507.510926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57705 -40.25217 -38.01892 -37.27759 -35.84073 -35.81235 -33.20791 -32.29471 -30.48825 -29.32172 -27.70255 -27.09217 -24.55796 -23.48073 -22.79088 -22.08010 -21.37893 -19.15553 -18.73503 -18.33918 -17.91126 -17.31716 -16.95925 -16.69247 -16.51658 -16.00726 -15.62890 -15.34375 -14.85110 -14.77034 -14.58944 -14.36509 -14.07093 -13.89402 -13.46627 -13.25998 -13.11777 -13.06227 -12.71903 -12.63081 -12.56796 -12.20638 -12.04419 -11.75671 -11.65982 -11.62692 -11.59118 -11.15344 -10.76323 -10.01356 -9.84091 -9.52205 -8.66464 -8.37935 -6.17222 0.91987 1.16250 1.27469 1.40340 1.52223 1.53477 1.80535 2.22564 2.67855 2.84588 3.51254 3.79050 3.85720 4.01627 4.05220 4.23592 4.30792 4.33456 4.36389 4.43388 4.62633 4.63869 4.69153 4.70456 4.85106 4.87552 4.93374 5.00440 5.22032 5.27740 5.32426 5.39789 5.45611 5.76564 5.90290 6.10071 6.31590 6.34514 6.66963 6.67033 6.75748 6.86258 6.90468 7.09241 7.86543 8.38816 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.006011 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.968530 B = 4657.093343 C = 5932.914780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.445 3.555 4 O -0.536 6.536 5 C 0.181 3.819 6 H 0.111 0.889 7 C -0.105 4.105 8 C -0.110 4.110 9 C 0.068 3.932 10 N -0.867 5.867 11 N -0.696 5.696 12 C 0.301 3.699 13 N -0.541 5.541 14 C -0.003 4.003 15 C -0.195 4.195 16 C -0.150 4.150 17 C 0.004 3.996 18 C -0.476 4.476 19 H 0.077 0.923 20 C 0.035 3.965 21 N -0.829 5.829 22 Si 0.979 3.021 23 H -0.268 1.268 24 H -0.270 1.270 25 H -0.256 1.256 26 H 0.138 0.862 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.345 0.655 36 H 0.351 0.649 37 H 0.408 0.592 38 H 0.149 0.851 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -13.800 -6.788 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.287 3.713 4 O -0.424 6.424 5 C 0.072 3.928 6 H 0.129 0.871 7 C -0.143 4.143 8 C -0.148 4.148 9 C -0.063 4.063 10 N -0.398 5.398 11 N -0.334 5.334 12 C 0.063 3.937 13 N -0.259 5.259 14 C -0.156 4.156 15 C -0.218 4.218 16 C -0.176 4.176 17 C -0.003 4.003 18 C -0.507 4.507 19 H 0.095 0.905 20 C -0.179 4.179 21 N -0.455 5.455 22 Si 0.800 3.200 23 H -0.194 1.194 24 H -0.194 1.194 25 H -0.179 1.179 26 H 0.156 0.844 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.158 0.842 36 H 0.164 0.836 37 H 0.246 0.754 38 H 0.166 0.834 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.967 -13.573 -6.616 15.389 hybrid contribution -0.028 1.126 -0.304 1.167 sum -2.996 -12.448 -6.920 14.553 Atomic orbital electron populations 1.23479 0.75656 1.05568 1.01784 1.86500 1.24388 1.32746 1.83977 1.25412 0.93761 0.81207 0.70946 1.90639 1.67671 1.37966 1.46118 1.20377 0.84706 0.84766 1.02966 0.87116 1.21725 0.96251 1.02005 0.94364 1.21452 0.93529 1.01382 0.98473 1.21724 0.87783 0.99024 0.97761 1.58627 1.08672 1.64173 1.08370 1.43528 1.74612 1.09820 1.05444 1.18621 1.00188 0.88547 0.86367 1.66571 1.21252 1.39930 0.98127 1.21890 1.06625 0.93035 0.94069 1.21663 1.05195 0.96513 0.98390 1.21445 1.04362 0.99748 0.92078 1.18271 0.96140 0.90522 0.95380 1.19367 1.24971 1.12315 0.94019 0.90476 1.26622 0.92740 0.98190 1.00315 1.69861 1.18323 1.25918 1.31439 0.85243 0.78268 0.78198 0.78279 1.19361 1.19445 1.17939 0.84357 0.93445 0.92241 0.87021 0.90555 0.93069 0.91829 0.93570 0.91135 0.84216 0.83576 0.75400 0.83406 0.86226 0.86906 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.84 16 2 O -0.36 -10.34 10.37 -51.38 -0.53 -10.87 16 3 C 0.45 16.03 7.30 71.24 0.52 16.55 16 4 O -0.54 -23.83 16.10 21.97 0.35 -23.48 16 5 C 0.18 6.14 2.49 44.25 0.11 6.25 16 6 H 0.11 3.93 7.53 -2.38 -0.02 3.91 16 7 C -0.11 -2.53 4.72 30.60 0.14 -2.38 16 8 C -0.11 -2.71 5.36 30.60 0.16 -2.55 16 9 C 0.07 1.31 6.79 86.30 0.59 1.90 16 10 N -0.87 -17.09 9.62 -186.72 -1.80 -18.89 16 11 N -0.70 -29.32 4.10 -326.70 -1.34 -30.65 16 12 C 0.30 15.19 7.39 134.05 0.99 16.18 16 13 N -0.54 -26.64 9.17 -191.44 -1.76 -28.39 16 14 C 0.00 -0.14 11.17 84.78 0.95 0.81 16 15 C -0.20 -9.48 10.08 22.32 0.22 -9.25 16 16 C -0.15 -8.16 8.79 22.89 0.20 -7.95 16 17 C 0.00 0.20 5.60 -21.06 -0.12 0.09 16 18 C -0.48 -25.25 8.54 23.37 0.20 -25.05 16 19 H 0.08 3.90 6.67 -2.91 -0.02 3.88 16 20 C 0.04 1.78 5.23 85.25 0.45 2.23 16 21 N -0.83 -43.48 10.83 21.83 0.24 -43.25 16 22 Si 0.98 38.62 29.58 68.60 2.03 40.65 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 26 H 0.14 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 28 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 29 H 0.11 2.08 7.99 -2.39 -0.02 2.07 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.62 7.75 -2.39 -0.02 1.60 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.35 6.18 8.99 -89.70 -0.81 5.37 16 36 H 0.35 5.27 9.08 -89.69 -0.81 4.46 16 37 H 0.41 16.97 6.80 -92.71 -0.63 16.34 16 38 H 0.15 5.86 8.06 -2.91 -0.02 5.84 16 39 H 0.12 5.03 8.06 -2.92 -0.02 5.00 16 40 H 0.11 6.36 6.17 -2.91 -0.02 6.34 16 41 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 Total: -1.00 -68.78 347.47 1.63 -67.14 By element: Atomic # 1 Polarization: 50.27 SS G_CDS: -1.18 Total: 49.09 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 5.61 Total: -1.35 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -4.65 Total: -121.18 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.18 Total: -34.35 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -68.78 1.63 -67.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167895203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.642 kcal (2) G-P(sol) polarization free energy of solvation -68.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds