Wall clock time and date at job start Tue Mar 31 2020 03:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 116.99886 * 2 1 4 4 O 1.20825 * 119.99901 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99942 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47309 * 300.00683 * 5 3 2 7 7 C 1.53010 * 109.46850 * 60.00581 * 5 3 2 8 8 C 1.52993 * 109.46730 * 184.99853 * 7 5 3 9 9 C 1.53001 * 109.46900 * 180.02562 * 8 7 5 10 10 N 1.46900 * 109.47502 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47215 * 180.02562 * 5 3 2 12 12 C 1.38369 * 119.99967 * 85.00182 * 11 5 3 13 13 C 1.39708 * 119.42816 * 0.02562 * 12 11 5 14 14 C 1.36566 * 119.49222 * 180.02562 * 13 12 11 15 15 C 1.41318 * 118.40806 * 0.02562 * 14 13 12 16 16 C 1.41196 * 120.56983 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99928 * 334.95683 * 16 15 14 18 18 C 1.39876 * 120.00207 * 154.95507 * 16 15 14 19 19 N 1.30901 * 119.99645 * 334.35453 * 18 16 15 20 20 Si 1.86797 * 120.00006 * 154.35271 * 18 16 15 21 21 H 1.48503 * 109.47089 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.47056 * 299.99755 * 20 18 16 23 23 H 1.48496 * 109.47198 * 60.00253 * 20 18 16 24 24 C 1.40750 * 118.86113 * 0.25554 * 15 14 13 25 25 N 1.31488 * 120.36927 * 359.46762 * 24 15 14 26 26 H 1.09000 * 109.47147 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47486 * 299.99244 * 1 2 3 28 28 H 1.08998 * 109.47785 * 59.99477 * 1 2 3 29 29 H 1.08997 * 109.47000 * 305.00130 * 7 5 3 30 30 H 1.09004 * 109.46607 * 64.99688 * 7 5 3 31 31 H 1.09005 * 109.47521 * 299.99568 * 8 7 5 32 32 H 1.08992 * 109.47447 * 60.00207 * 8 7 5 33 33 H 1.09002 * 109.47534 * 300.00026 * 9 8 7 34 34 H 1.09004 * 109.47291 * 59.99902 * 9 8 7 35 35 H 1.00894 * 111.00161 * 179.97438 * 10 9 8 36 36 H 1.00902 * 110.99946 * 303.95686 * 10 9 8 37 37 H 0.96994 * 120.00311 * 265.00904 * 11 5 3 38 38 H 1.08000 * 120.25270 * 0.04491 * 13 12 11 39 39 H 1.08000 * 120.79470 * 179.97438 * 14 13 12 40 40 H 0.96995 * 119.99978 * 354.34227 * 19 18 16 41 41 H 1.08002 * 119.82161 * 179.72755 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1138 0.5812 -1.2485 8 6 5.6422 0.5514 -1.1866 9 6 6.1897 -0.1417 -2.4359 10 7 7.6573 -0.1699 -2.3769 11 7 3.9817 2.6798 0.0011 12 6 4.0773 3.3725 1.1950 13 6 3.7753 2.7204 2.3931 14 6 3.8688 3.4030 3.5722 15 6 4.2709 4.7573 3.5350 16 6 4.3821 5.5063 4.7268 17 1 3.8057 5.2266 5.5962 18 6 5.2389 6.6106 4.7814 19 7 6.2740 6.6760 3.9827 20 14 4.9059 7.9921 5.9938 21 1 5.9516 9.0370 5.8531 22 1 3.5734 8.5853 5.7145 23 1 4.9275 7.4526 7.3771 24 6 4.5528 5.3483 2.2891 25 7 4.4527 4.6457 1.1822 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 3.7320 -0.4387 -1.2944 30 1 3.7966 1.1282 -2.1363 31 1 6.0240 1.5714 -1.1407 32 1 5.9593 0.0045 -0.2988 33 1 5.8080 -1.1617 -2.4823 34 1 5.8726 0.4056 -3.3236 35 1 8.0433 -0.6234 -3.1913 36 1 8.0327 0.7604 -2.2686 37 1 4.1896 3.1244 -0.8355 38 1 3.4707 1.6843 2.3869 39 1 3.6400 2.9197 4.5106 40 1 6.4941 5.9236 3.4116 41 1 4.8572 6.3835 2.2423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167896102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:08 Heat of formation + Delta-G solvation = -62.762229 kcal Electronic energy + Delta-G solvation = -23364.414587 eV Core-core repulsion = 19857.685230 eV Total energy + Delta-G solvation = -3506.729357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.47493 -38.72982 -37.08444 -36.22538 -35.08283 -33.85399 -31.68455 -31.10326 -28.94935 -28.22324 -26.82318 -24.58322 -23.72185 -22.14379 -21.28816 -21.23352 -20.18068 -17.94604 -17.55841 -16.88628 -16.75144 -16.09770 -16.05781 -15.59013 -15.08355 -14.49063 -14.36974 -14.07296 -13.81410 -13.71751 -13.35046 -12.93608 -12.72759 -12.41930 -12.15366 -12.03140 -11.79245 -11.76370 -11.67302 -11.22733 -11.10326 -11.08061 -10.82284 -10.71433 -10.40429 -10.34990 -9.88155 -9.31449 -8.91824 -8.86358 -8.50302 -8.08020 -7.19666 -6.94167 -4.27598 2.37066 2.57690 2.73381 2.92138 3.19304 3.32965 3.40240 3.87072 4.06098 4.25894 4.62468 4.65163 4.84062 4.89174 5.06845 5.07936 5.14422 5.21483 5.35731 5.44802 5.49033 5.58136 5.62798 5.67967 5.91939 6.05362 6.19143 6.21835 6.43456 6.46345 6.61501 6.90197 7.10686 7.17070 7.20133 7.31208 7.69236 7.82606 7.96111 7.99316 8.14622 8.39449 8.69637 8.83500 9.59030 10.09467 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.003995 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.773286 B = 7007.278345 C = 8414.983489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.430 3.570 4 O -0.486 6.486 5 C 0.184 3.816 6 H 0.114 0.886 7 C -0.116 4.116 8 C -0.117 4.117 9 C 0.062 3.938 10 N -0.853 5.853 11 N -0.712 5.712 12 C 0.265 3.735 13 C -0.180 4.180 14 C -0.159 4.159 15 C 0.022 3.978 16 C -0.520 4.520 17 H 0.074 0.926 18 C 0.038 3.962 19 N -0.802 5.802 20 Si 1.066 2.934 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.277 1.277 24 C 0.024 3.976 25 N -0.503 5.503 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.339 0.661 36 H 0.343 0.657 37 H 0.396 0.604 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.296 0.704 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 -13.170 -9.958 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.268 3.732 4 O -0.370 6.370 5 C 0.073 3.927 6 H 0.131 0.869 7 C -0.155 4.155 8 C -0.155 4.155 9 C -0.069 4.069 10 N -0.383 5.383 11 N -0.351 5.351 12 C 0.035 3.965 13 C -0.204 4.204 14 C -0.186 4.186 15 C 0.016 3.984 16 C -0.550 4.550 17 H 0.092 0.908 18 C -0.182 4.182 19 N -0.426 5.426 20 Si 0.889 3.111 21 H -0.199 1.199 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.137 4.137 25 N -0.216 5.216 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.231 0.769 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.734 -11.544 -9.524 15.213 hybrid contribution -1.190 -1.166 -0.817 1.855 sum -3.924 -12.709 -10.341 16.848 Atomic orbital electron populations 1.23186 0.77243 1.03154 1.02387 1.86527 1.22845 1.34279 1.84596 1.25434 0.93549 0.81357 0.72823 1.90689 1.66647 1.36364 1.43286 1.20211 0.85316 0.85573 1.01632 0.86880 1.21731 0.96471 1.01283 0.95997 1.21550 0.93480 1.01909 0.98523 1.21797 0.88022 1.00440 0.96633 1.58677 1.06419 1.25838 1.47348 1.43288 1.76568 1.08615 1.06589 1.17541 1.04280 0.89847 0.84815 1.20617 1.07978 0.98808 0.93012 1.20877 1.07497 0.94204 0.95997 1.18435 0.93828 0.91629 0.94459 1.20296 1.24276 1.11894 0.98490 0.90776 1.26981 0.91877 1.00331 0.99054 1.70512 1.20356 1.34255 1.17473 0.83628 0.77257 0.75151 0.75026 1.19865 1.20057 1.20249 1.22451 1.06581 0.98204 0.86484 1.66561 1.16283 1.05645 1.33148 0.88438 0.92081 0.92298 0.89342 0.91135 0.90967 0.90572 0.91080 0.95698 0.84871 0.84454 0.76904 0.88880 0.87864 0.89014 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.43 16 2 O -0.37 -4.84 10.37 -39.27 -0.41 -5.24 16 3 C 0.43 6.85 7.10 36.01 0.26 7.10 16 4 O -0.49 -9.71 16.10 -18.75 -0.30 -10.01 16 5 C 0.18 2.65 2.17 -69.08 -0.15 2.50 16 6 H 0.11 1.61 6.41 -51.93 -0.33 1.28 16 7 C -0.12 -1.21 4.72 -26.73 -0.13 -1.34 16 8 C -0.12 -1.22 5.36 -26.73 -0.14 -1.37 16 9 C 0.06 0.55 6.79 -3.82 -0.03 0.52 16 10 N -0.85 -7.65 9.62 -10.37 -0.10 -7.75 16 11 N -0.71 -12.80 4.19 -54.99 -0.23 -13.03 16 12 C 0.26 6.05 7.52 -155.13 -1.17 4.88 16 13 C -0.18 -4.11 9.07 -39.64 -0.36 -4.47 16 14 C -0.16 -3.94 9.88 -39.01 -0.39 -4.33 16 15 C 0.02 0.59 5.31 -106.65 -0.57 0.02 16 16 C -0.52 -13.91 9.00 -37.85 -0.34 -14.25 16 17 H 0.07 1.93 7.96 -52.48 -0.42 1.51 16 18 C 0.04 0.98 4.94 -17.34 -0.09 0.89 16 19 N -0.80 -21.46 12.33 55.54 0.68 -20.78 16 20 Si 1.07 21.75 30.00 -169.99 -5.10 16.65 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 24 C 0.02 0.63 9.15 -16.75 -0.15 0.48 16 25 N -0.50 -12.78 10.37 -11.79 -0.12 -12.91 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.09 0.78 7.99 -51.93 -0.42 0.37 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.34 2.37 9.08 -39.29 -0.36 2.02 16 36 H 0.34 2.99 8.99 -39.29 -0.35 2.63 16 37 H 0.40 6.78 8.72 -40.82 -0.36 6.43 16 38 H 0.09 1.85 6.10 -52.49 -0.32 1.53 16 39 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 40 H 0.30 8.19 6.69 -40.82 -0.27 7.92 16 41 H 0.14 3.83 6.50 -52.49 -0.34 3.49 16 LS Contribution 347.10 15.07 5.23 5.23 Total: -1.00 -31.63 347.10 -8.27 -39.90 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -5.75 Total: 15.85 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.18 Total: -7.92 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.23 Total: -54.46 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.71 Total: -15.25 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.10 Total: 16.65 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.63 -8.27 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167896102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.862 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds