Wall clock time and date at job start Tue Mar 31 2020 03:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 116.99886 * 2 1 4 4 O 1.20825 * 119.99901 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99942 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47309 * 300.00683 * 5 3 2 7 7 C 1.53010 * 109.46850 * 60.00581 * 5 3 2 8 8 C 1.52993 * 109.46730 * 184.99853 * 7 5 3 9 9 C 1.53001 * 109.46900 * 180.02562 * 8 7 5 10 10 N 1.46900 * 109.47502 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47215 * 180.02562 * 5 3 2 12 12 C 1.38369 * 119.99967 * 85.00182 * 11 5 3 13 13 C 1.39708 * 119.42816 * 0.02562 * 12 11 5 14 14 C 1.36566 * 119.49222 * 180.02562 * 13 12 11 15 15 C 1.41318 * 118.40806 * 0.02562 * 14 13 12 16 16 C 1.41196 * 120.56983 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99928 * 334.95683 * 16 15 14 18 18 C 1.39876 * 120.00207 * 154.95507 * 16 15 14 19 19 N 1.30901 * 119.99645 * 334.35453 * 18 16 15 20 20 Si 1.86797 * 120.00006 * 154.35271 * 18 16 15 21 21 H 1.48503 * 109.47089 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.47056 * 299.99755 * 20 18 16 23 23 H 1.48496 * 109.47198 * 60.00253 * 20 18 16 24 24 C 1.40750 * 118.86113 * 0.25554 * 15 14 13 25 25 N 1.31488 * 120.36927 * 359.46762 * 24 15 14 26 26 H 1.09000 * 109.47147 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47486 * 299.99244 * 1 2 3 28 28 H 1.08998 * 109.47785 * 59.99477 * 1 2 3 29 29 H 1.08997 * 109.47000 * 305.00130 * 7 5 3 30 30 H 1.09004 * 109.46607 * 64.99688 * 7 5 3 31 31 H 1.09005 * 109.47521 * 299.99568 * 8 7 5 32 32 H 1.08992 * 109.47447 * 60.00207 * 8 7 5 33 33 H 1.09002 * 109.47534 * 300.00026 * 9 8 7 34 34 H 1.09004 * 109.47291 * 59.99902 * 9 8 7 35 35 H 1.00894 * 111.00161 * 179.97438 * 10 9 8 36 36 H 1.00902 * 110.99946 * 303.95686 * 10 9 8 37 37 H 0.96994 * 120.00311 * 265.00904 * 11 5 3 38 38 H 1.08000 * 120.25270 * 0.04491 * 13 12 11 39 39 H 1.08000 * 120.79470 * 179.97438 * 14 13 12 40 40 H 0.96995 * 119.99978 * 354.34227 * 19 18 16 41 41 H 1.08002 * 119.82161 * 179.72755 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9557 0.7809 0.8908 7 6 4.1138 0.5812 -1.2485 8 6 5.6422 0.5514 -1.1866 9 6 6.1897 -0.1417 -2.4359 10 7 7.6573 -0.1699 -2.3769 11 7 3.9817 2.6798 0.0011 12 6 4.0773 3.3725 1.1950 13 6 3.7753 2.7204 2.3931 14 6 3.8688 3.4030 3.5722 15 6 4.2709 4.7573 3.5350 16 6 4.3821 5.5063 4.7268 17 1 3.8057 5.2266 5.5962 18 6 5.2389 6.6106 4.7814 19 7 6.2740 6.6760 3.9827 20 14 4.9059 7.9921 5.9938 21 1 5.9516 9.0370 5.8531 22 1 3.5734 8.5853 5.7145 23 1 4.9275 7.4526 7.3771 24 6 4.5528 5.3483 2.2891 25 7 4.4527 4.6457 1.1822 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 3.7320 -0.4387 -1.2944 30 1 3.7966 1.1282 -2.1363 31 1 6.0240 1.5714 -1.1407 32 1 5.9593 0.0045 -0.2988 33 1 5.8080 -1.1617 -2.4823 34 1 5.8726 0.4056 -3.3236 35 1 8.0433 -0.6234 -3.1913 36 1 8.0327 0.7604 -2.2686 37 1 4.1896 3.1244 -0.8355 38 1 3.4707 1.6843 2.3869 39 1 3.6400 2.9197 4.5106 40 1 6.4941 5.9236 3.4116 41 1 4.8572 6.3835 2.2423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167896102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:06 Heat of formation + Delta-G solvation = -84.498232 kcal Electronic energy + Delta-G solvation = -23365.357131 eV Core-core repulsion = 19857.685230 eV Total energy + Delta-G solvation = -3507.671901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.75441 -40.52742 -38.29928 -37.37952 -36.47384 -35.39109 -33.21917 -32.77369 -30.35977 -29.61842 -27.92231 -26.38770 -24.79301 -23.86612 -23.03802 -22.12058 -21.52932 -19.87486 -18.82450 -18.39232 -18.02877 -17.38701 -17.13919 -16.70130 -16.31862 -16.06031 -15.65939 -15.43353 -15.24233 -14.99245 -14.66653 -14.48954 -14.25352 -13.78912 -13.67435 -13.33112 -13.13846 -13.04269 -12.89850 -12.78708 -12.66481 -12.07987 -11.96229 -11.85934 -11.81291 -11.64081 -11.60225 -11.06410 -10.66299 -10.44264 -10.03809 -9.58628 -9.19887 -8.76498 -6.28460 0.69652 0.90420 1.12378 1.53277 1.58917 1.72192 1.82941 2.36145 2.43257 2.74530 3.41336 3.55828 3.76164 3.83118 3.90826 4.05788 4.17227 4.28837 4.30571 4.32537 4.40208 4.49144 4.58215 4.62983 4.68254 4.73713 4.82608 4.88528 5.12988 5.21063 5.29546 5.31221 5.38637 5.44209 5.67024 5.90437 6.01049 6.25044 6.34212 6.55450 6.59628 6.74125 6.81103 6.93229 7.66561 8.07379 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.003995 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.773286 B = 7007.278345 C = 8414.983489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.436 3.564 4 O -0.533 6.533 5 C 0.179 3.821 6 H 0.121 0.879 7 C -0.103 4.103 8 C -0.111 4.111 9 C 0.065 3.935 10 N -0.865 5.865 11 N -0.705 5.705 12 C 0.280 3.720 13 C -0.184 4.184 14 C -0.161 4.161 15 C -0.008 4.008 16 C -0.553 4.553 17 H 0.074 0.926 18 C 0.003 3.997 19 N -0.823 5.823 20 Si 1.118 2.882 21 H -0.272 1.272 22 H -0.267 1.267 23 H -0.256 1.256 24 C 0.004 3.996 25 N -0.525 5.525 26 H 0.139 0.861 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.033 0.967 35 H 0.350 0.650 36 H 0.342 0.658 37 H 0.401 0.599 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.279 0.721 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 -15.471 -10.614 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.277 3.723 4 O -0.421 6.421 5 C 0.069 3.931 6 H 0.138 0.862 7 C -0.141 4.141 8 C -0.150 4.150 9 C -0.066 4.066 10 N -0.396 5.396 11 N -0.343 5.343 12 C 0.047 3.953 13 C -0.207 4.207 14 C -0.188 4.188 15 C -0.013 4.013 16 C -0.582 4.582 17 H 0.092 0.908 18 C -0.211 4.211 19 N -0.447 5.447 20 Si 0.935 3.065 21 H -0.196 1.196 22 H -0.192 1.192 23 H -0.180 1.180 24 C -0.155 4.155 25 N -0.240 5.240 26 H 0.157 0.843 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.236 0.764 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.597 -13.907 -10.210 17.624 hybrid contribution -1.020 -0.736 -0.792 1.487 sum -4.617 -14.643 -11.003 18.889 Atomic orbital electron populations 1.23516 0.75428 1.05727 1.01953 1.86508 1.24479 1.32415 1.83743 1.25480 0.93851 0.81394 0.71536 1.90690 1.67685 1.37975 1.45721 1.20573 0.84818 0.83578 1.04127 0.86191 1.21714 0.96165 1.02206 0.94049 1.21475 0.93476 1.00806 0.99201 1.21763 0.87948 1.00971 0.95874 1.58688 1.06667 1.26005 1.48222 1.43404 1.75834 1.09890 1.05136 1.17974 1.01390 0.89176 0.86768 1.20935 1.07240 1.00311 0.92244 1.21200 1.06361 0.93680 0.97534 1.18691 0.95134 0.92881 0.94633 1.20489 1.25494 1.13572 0.98670 0.90794 1.28405 0.90732 1.02225 0.99778 1.70627 1.21711 1.33626 1.18763 0.82994 0.77333 0.72381 0.73796 1.19635 1.19175 1.18021 1.22203 1.08168 0.97876 0.87208 1.66572 1.17752 1.06972 1.32733 0.84345 0.93197 0.92176 0.86660 0.90275 0.92971 0.91411 0.89881 0.94867 0.83624 0.84540 0.76373 0.85534 0.86351 0.90897 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -8.26 10.37 -51.45 -0.53 -8.79 16 3 C 0.44 12.90 7.10 71.24 0.51 13.41 16 4 O -0.53 -20.67 16.10 21.97 0.35 -20.32 16 5 C 0.18 4.71 2.17 44.25 0.10 4.81 16 6 H 0.12 3.06 6.41 -2.39 -0.02 3.05 16 7 C -0.10 -1.82 4.72 30.60 0.14 -1.68 16 8 C -0.11 -2.09 5.36 30.59 0.16 -1.92 16 9 C 0.07 0.98 6.79 86.30 0.59 1.56 16 10 N -0.87 -13.92 9.62 -186.71 -1.80 -15.71 16 11 N -0.70 -24.52 4.19 -327.88 -1.37 -25.89 16 12 C 0.28 12.71 7.52 133.32 1.00 13.72 16 13 C -0.18 -8.18 9.07 22.23 0.20 -7.98 16 14 C -0.16 -7.99 9.88 22.64 0.22 -7.77 16 15 C -0.01 -0.45 5.31 -21.18 -0.11 -0.56 16 16 C -0.55 -30.45 9.00 23.39 0.21 -30.24 16 17 H 0.07 3.93 7.96 -2.91 -0.02 3.91 16 18 C 0.00 0.18 4.94 85.23 0.42 0.60 16 19 N -0.82 -45.83 12.33 21.82 0.27 -45.56 16 20 Si 1.12 44.19 30.00 68.60 2.06 46.24 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 24 C 0.00 0.21 9.15 85.36 0.78 1.00 16 25 N -0.53 -27.36 10.37 -191.20 -1.98 -29.35 16 26 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 28 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 29 H 0.12 1.52 7.99 -2.39 -0.02 1.50 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.19 7.75 -2.38 -0.02 1.17 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.03 0.45 8.14 -2.38 -0.02 0.44 16 35 H 0.35 4.21 9.08 -89.70 -0.81 3.40 16 36 H 0.34 5.56 8.99 -89.69 -0.81 4.75 16 37 H 0.40 13.36 8.72 -92.71 -0.81 12.55 16 38 H 0.13 4.71 6.10 -2.91 -0.02 4.69 16 39 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 40 H 0.28 16.30 6.69 -92.71 -0.62 15.68 16 41 H 0.12 7.06 6.50 -2.91 -0.02 7.04 16 Total: -1.00 -70.90 347.10 1.21 -69.69 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: -1.20 Total: 43.05 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 5.42 Total: -13.37 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.89 Total: -116.51 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.18 Total: -29.11 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.06 Total: 46.24 kcal Total: -70.90 1.21 -69.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167896102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.804 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds