Wall clock time and date at job start Tue Mar 31 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 117.00001 * 2 1 4 4 O 1.20826 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99603 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46942 * 299.99225 * 5 3 2 7 7 C 1.52993 * 109.47534 * 60.00095 * 5 3 2 8 8 C 1.53000 * 109.47216 * 184.99764 * 7 5 3 9 9 C 1.53002 * 109.47092 * 179.97438 * 8 7 5 10 10 N 1.46903 * 109.46829 * 179.97438 * 9 8 7 11 11 N 1.46507 * 109.46565 * 179.97438 * 5 3 2 12 12 C 1.38826 * 119.99975 * 84.99720 * 11 5 3 13 13 C 1.39793 * 119.58446 * 359.72810 * 12 11 5 14 14 C 1.38595 * 119.49268 * 179.78677 * 13 12 11 15 15 C 1.38394 * 118.67453 * 0.47654 * 14 13 12 16 16 C 1.40541 * 119.15119 * 359.74734 * 15 14 13 17 17 C 1.41317 * 119.78512 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.40031 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.30744 * 119.99393 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00206 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47111 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47162 * 120.00014 * 21 19 17 24 24 H 1.48497 * 109.47311 * 240.00340 * 21 19 17 25 25 N 1.31955 * 119.58415 * 179.97438 * 12 11 5 26 26 H 1.09001 * 109.47157 * 299.99890 * 1 2 3 27 27 H 1.09004 * 109.47122 * 60.00023 * 1 2 3 28 28 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46615 * 304.99977 * 7 5 3 30 30 H 1.08999 * 109.47496 * 64.99355 * 7 5 3 31 31 H 1.09000 * 109.47008 * 299.99697 * 8 7 5 32 32 H 1.09000 * 109.46646 * 60.00170 * 8 7 5 33 33 H 1.09000 * 109.47278 * 299.99938 * 9 8 7 34 34 H 1.09003 * 109.46645 * 60.00278 * 9 8 7 35 35 H 1.00898 * 110.99818 * 56.04898 * 10 9 8 36 36 H 1.00907 * 110.99424 * 180.02562 * 10 9 8 37 37 H 0.96992 * 119.99990 * 264.99748 * 11 5 3 38 38 H 1.08006 * 120.25641 * 359.97438 * 13 12 11 39 39 H 1.08004 * 120.66442 * 180.21846 * 14 13 12 40 40 H 1.08005 * 120.41967 * 179.76496 * 15 14 13 41 41 H 0.97000 * 119.99450 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1130 0.5815 -1.2501 8 6 5.6415 0.5516 -1.1894 9 6 6.1880 -0.1423 -2.4387 10 7 7.6556 -0.1704 -2.3807 11 7 3.9818 2.6797 -0.0011 12 6 4.0785 3.3754 1.1964 13 6 3.7719 2.7284 2.3971 14 6 3.8734 3.4234 3.5919 15 6 4.2685 4.7493 3.5574 16 6 4.5584 5.3452 2.3180 17 6 4.9636 6.6981 2.2672 18 1 5.0500 7.2706 3.1789 19 6 5.2530 7.2966 1.0348 20 7 5.1488 6.6035 -0.0689 21 14 5.7879 9.0851 0.9677 22 1 5.8275 9.6419 2.3438 23 1 7.1392 9.1751 0.3587 24 1 4.8226 9.8600 0.1473 25 7 4.4538 4.6404 1.1865 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.7311 -0.4385 -1.2960 30 1 3.7952 1.1286 -2.1376 31 1 6.0233 1.5715 -1.1435 32 1 5.9591 0.0043 -0.3019 33 1 5.8063 -1.1622 -2.4842 34 1 5.8703 0.4047 -3.3264 35 1 7.9755 -0.6156 -1.5336 36 1 8.0411 -0.6237 -3.1956 37 1 4.1892 3.1238 -0.8380 38 1 3.4614 1.6940 2.3941 39 1 3.6446 2.9412 4.5308 40 1 4.3533 5.3187 4.4712 41 1 5.3490 7.0182 -0.9227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167897998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:10 Heat of formation + Delta-G solvation = -49.419479 kcal Electronic energy + Delta-G solvation = -23643.077871 eV Core-core repulsion = 20136.927099 eV Total energy + Delta-G solvation = -3506.150772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.33280 -38.29701 -36.85361 -36.10339 -34.78762 -33.38858 -31.79751 -30.31670 -29.08151 -28.10028 -26.48156 -25.36709 -23.53945 -21.58240 -21.16877 -21.11602 -19.90838 -17.45670 -17.39030 -16.65603 -16.43025 -16.00665 -15.82619 -15.23576 -14.98593 -14.69353 -14.41780 -13.84890 -13.56915 -13.46373 -13.15268 -12.86059 -12.57483 -12.32711 -12.11820 -11.95929 -11.61766 -11.55911 -11.21470 -11.10677 -10.94167 -10.75395 -10.61557 -10.56093 -10.38401 -10.25328 -9.87720 -9.49961 -8.94043 -8.80291 -7.90519 -7.49374 -6.59957 -6.29539 -4.43901 2.51400 2.74636 2.93814 3.15046 3.19408 3.28245 3.36054 4.01649 4.04819 4.37039 4.74167 4.85628 4.94696 5.05282 5.16299 5.21963 5.24440 5.30918 5.48543 5.54721 5.57225 5.75023 5.81307 6.09436 6.15201 6.17670 6.39980 6.52723 6.57742 6.84575 6.86190 6.92877 7.00826 7.27351 7.29726 7.57790 7.77892 7.90099 8.07119 8.17157 8.34468 8.62696 8.82314 9.12117 10.26411 10.43078 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.004891 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.292372 B = 5723.360625 C = 6972.600751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.432 3.568 4 O -0.482 6.482 5 C 0.183 3.817 6 H 0.115 0.885 7 C -0.117 4.117 8 C -0.117 4.117 9 C 0.063 3.937 10 N -0.852 5.852 11 N -0.708 5.708 12 C 0.417 3.583 13 C -0.366 4.366 14 C -0.031 4.031 15 C -0.313 4.313 16 C 0.292 3.708 17 C -0.433 4.433 18 H 0.084 0.916 19 C 0.071 3.929 20 N -0.713 5.713 21 Si 0.905 3.095 22 H -0.261 1.261 23 H -0.274 1.274 24 H -0.274 1.274 25 N -0.524 5.524 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.341 0.659 36 H 0.339 0.661 37 H 0.403 0.597 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 -14.525 -5.128 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.270 3.730 4 O -0.366 6.366 5 C 0.071 3.929 6 H 0.132 0.868 7 C -0.156 4.156 8 C -0.155 4.155 9 C -0.068 4.068 10 N -0.381 5.381 11 N -0.345 5.345 12 C 0.177 3.823 13 C -0.392 4.392 14 C -0.055 4.055 15 C -0.336 4.336 16 C 0.165 3.835 17 C -0.465 4.465 18 H 0.102 0.898 19 C -0.154 4.154 20 N -0.335 5.335 21 Si 0.729 3.271 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.200 1.200 25 N -0.245 5.245 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.239 0.761 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.449 -13.110 -6.042 14.508 hybrid contribution -0.493 -0.477 0.501 0.849 sum -1.942 -13.587 -5.542 14.801 Atomic orbital electron populations 1.23169 0.77367 1.02996 1.02396 1.86516 1.22746 1.34405 1.84766 1.25303 0.93461 0.81312 0.72887 1.90704 1.66574 1.36277 1.43044 1.20234 0.85264 0.85846 1.01512 0.86761 1.21736 0.96474 1.01051 0.96293 1.21559 0.93521 1.03163 0.97270 1.21796 0.87694 0.98158 0.99146 1.58646 1.08475 1.63512 1.07457 1.43877 1.74567 1.08479 1.07567 1.18392 0.89906 0.89984 0.83993 1.20532 1.25836 0.99831 0.93015 1.20563 0.95211 0.94126 0.95620 1.21536 1.17877 0.95958 0.98239 1.18195 0.87128 0.92575 0.85563 1.19622 1.38564 0.94574 0.93700 0.89822 1.26054 0.94254 0.99604 0.95531 1.70155 1.29314 1.35719 0.98262 0.86321 0.78760 0.82513 0.79483 1.18459 1.19911 1.19973 1.68169 1.23717 1.03003 1.29609 0.92128 0.92292 0.88573 0.89688 0.90861 0.89660 0.91736 0.95789 0.91074 0.84707 0.84915 0.76112 0.89784 0.88941 0.88646 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.17 10.37 -39.25 -0.41 -5.58 16 3 C 0.43 7.41 7.11 36.01 0.26 7.66 16 4 O -0.48 -10.34 16.10 -18.75 -0.30 -10.64 16 5 C 0.18 2.88 2.18 -69.08 -0.15 2.73 16 6 H 0.11 1.76 6.45 -51.93 -0.33 1.42 16 7 C -0.12 -1.37 4.72 -26.73 -0.13 -1.50 16 8 C -0.12 -1.38 5.36 -26.73 -0.14 -1.52 16 9 C 0.06 0.62 6.79 -3.82 -0.03 0.60 16 10 N -0.85 -8.43 9.62 -10.37 -0.10 -8.53 16 11 N -0.71 -14.35 4.21 -55.03 -0.23 -14.58 16 12 C 0.42 10.37 7.53 -155.32 -1.17 9.20 16 13 C -0.37 -8.68 9.17 -38.87 -0.36 -9.03 16 14 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 15 C -0.31 -8.12 9.83 -38.66 -0.38 -8.50 16 16 C 0.29 8.32 6.55 -85.01 -0.56 7.76 16 17 C -0.43 -11.97 9.14 -37.74 -0.34 -12.31 16 18 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16 19 C 0.07 1.85 5.50 -17.34 -0.10 1.76 16 20 N -0.71 -19.35 11.46 55.55 0.64 -18.72 16 21 Si 0.90 19.13 29.56 -169.99 -5.02 14.11 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 N -0.52 -14.80 7.89 -10.33 -0.08 -14.88 16 26 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.83 7.99 -51.93 -0.42 0.41 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.26 7.75 -51.93 -0.40 0.86 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.34 3.01 8.99 -39.29 -0.35 2.66 16 36 H 0.34 2.65 9.08 -39.29 -0.36 2.30 16 37 H 0.40 8.23 8.72 -40.82 -0.36 7.87 16 38 H 0.08 1.78 6.14 -52.48 -0.32 1.45 16 39 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 40 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 41 H 0.27 6.64 8.29 -40.82 -0.34 6.30 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -33.37 349.46 -8.56 -41.93 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -5.89 Total: 14.45 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.43 Total: -2.83 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.22 Total: -56.71 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.71 Total: -16.22 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.37 -8.56 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167897998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.491 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds