Wall clock time and date at job start Tue Mar 31 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 117.00001 * 2 1 4 4 O 1.20826 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99603 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46942 * 299.99225 * 5 3 2 7 7 C 1.52993 * 109.47534 * 60.00095 * 5 3 2 8 8 C 1.53000 * 109.47216 * 184.99764 * 7 5 3 9 9 C 1.53002 * 109.47092 * 179.97438 * 8 7 5 10 10 N 1.46903 * 109.46829 * 179.97438 * 9 8 7 11 11 N 1.46507 * 109.46565 * 179.97438 * 5 3 2 12 12 C 1.38826 * 119.99975 * 84.99720 * 11 5 3 13 13 C 1.39793 * 119.58446 * 359.72810 * 12 11 5 14 14 C 1.38595 * 119.49268 * 179.78677 * 13 12 11 15 15 C 1.38394 * 118.67453 * 0.47654 * 14 13 12 16 16 C 1.40541 * 119.15119 * 359.74734 * 15 14 13 17 17 C 1.41317 * 119.78512 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.40031 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.30744 * 119.99393 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00206 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47111 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47162 * 120.00014 * 21 19 17 24 24 H 1.48497 * 109.47311 * 240.00340 * 21 19 17 25 25 N 1.31955 * 119.58415 * 179.97438 * 12 11 5 26 26 H 1.09001 * 109.47157 * 299.99890 * 1 2 3 27 27 H 1.09004 * 109.47122 * 60.00023 * 1 2 3 28 28 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46615 * 304.99977 * 7 5 3 30 30 H 1.08999 * 109.47496 * 64.99355 * 7 5 3 31 31 H 1.09000 * 109.47008 * 299.99697 * 8 7 5 32 32 H 1.09000 * 109.46646 * 60.00170 * 8 7 5 33 33 H 1.09000 * 109.47278 * 299.99938 * 9 8 7 34 34 H 1.09003 * 109.46645 * 60.00278 * 9 8 7 35 35 H 1.00898 * 110.99818 * 56.04898 * 10 9 8 36 36 H 1.00907 * 110.99424 * 180.02562 * 10 9 8 37 37 H 0.96992 * 119.99990 * 264.99748 * 11 5 3 38 38 H 1.08006 * 120.25641 * 359.97438 * 13 12 11 39 39 H 1.08004 * 120.66442 * 180.21846 * 14 13 12 40 40 H 1.08005 * 120.41967 * 179.76496 * 15 14 13 41 41 H 0.97000 * 119.99450 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1130 0.5815 -1.2501 8 6 5.6415 0.5516 -1.1894 9 6 6.1880 -0.1423 -2.4387 10 7 7.6556 -0.1704 -2.3807 11 7 3.9818 2.6797 -0.0011 12 6 4.0785 3.3754 1.1964 13 6 3.7719 2.7284 2.3971 14 6 3.8734 3.4234 3.5919 15 6 4.2685 4.7493 3.5574 16 6 4.5584 5.3452 2.3180 17 6 4.9636 6.6981 2.2672 18 1 5.0500 7.2706 3.1789 19 6 5.2530 7.2966 1.0348 20 7 5.1488 6.6035 -0.0689 21 14 5.7879 9.0851 0.9677 22 1 5.8275 9.6419 2.3438 23 1 7.1392 9.1751 0.3587 24 1 4.8226 9.8600 0.1473 25 7 4.4538 4.6404 1.1865 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.7311 -0.4385 -1.2960 30 1 3.7952 1.1286 -2.1376 31 1 6.0233 1.5715 -1.1435 32 1 5.9591 0.0043 -0.3019 33 1 5.8063 -1.1622 -2.4842 34 1 5.8703 0.4047 -3.3264 35 1 7.9755 -0.6156 -1.5336 36 1 8.0411 -0.6237 -3.1956 37 1 4.1892 3.1238 -0.8380 38 1 3.4614 1.6940 2.3941 39 1 3.6446 2.9412 4.5308 40 1 4.3533 5.3187 4.4712 41 1 5.3490 7.0182 -0.9227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167897998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:09 Heat of formation + Delta-G solvation = -72.559674 kcal Electronic energy + Delta-G solvation = -23644.081305 eV Core-core repulsion = 20136.927099 eV Total energy + Delta-G solvation = -3507.154206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68646 -40.09170 -38.14666 -37.35113 -36.11209 -35.17920 -33.21015 -32.20196 -30.57437 -29.43092 -27.65976 -27.28010 -24.60825 -23.39174 -22.86476 -22.11024 -21.41560 -19.31539 -18.75242 -18.21713 -17.78238 -17.29799 -16.79132 -16.65315 -16.49506 -16.15701 -15.85701 -15.31881 -14.88465 -14.81579 -14.61199 -14.33322 -14.07192 -13.84207 -13.54222 -13.10496 -12.93183 -12.82962 -12.68311 -12.63870 -12.57325 -12.21052 -12.10790 -11.79885 -11.76987 -11.74344 -11.60966 -11.24791 -10.73133 -9.87852 -9.53536 -9.47112 -8.43460 -8.23684 -6.48886 1.01171 1.16380 1.28442 1.41230 1.53979 1.56821 1.73335 2.25016 2.52250 2.92619 3.44806 3.77608 3.89167 3.92155 4.08377 4.21478 4.30544 4.31657 4.35147 4.40036 4.58585 4.60315 4.68589 4.73322 4.81827 4.88710 4.93532 4.97934 5.04367 5.26383 5.33037 5.34490 5.42533 5.67124 5.91506 5.99675 6.20204 6.30710 6.44621 6.65663 6.75214 6.77808 6.89275 7.15432 8.31752 8.50469 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.004891 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.292372 B = 5723.360625 C = 6972.600751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.439 3.561 4 O -0.533 6.533 5 C 0.178 3.822 6 H 0.124 0.876 7 C -0.104 4.104 8 C -0.111 4.111 9 C 0.067 3.933 10 N -0.868 5.868 11 N -0.705 5.705 12 C 0.403 3.597 13 C -0.368 4.368 14 C -0.030 4.030 15 C -0.341 4.341 16 C 0.258 3.742 17 C -0.469 4.469 18 H 0.087 0.913 19 C 0.025 3.975 20 N -0.750 5.750 21 Si 0.987 3.013 22 H -0.254 1.254 23 H -0.265 1.265 24 H -0.269 1.269 25 N -0.560 5.560 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.140 0.860 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.346 0.654 36 H 0.351 0.649 37 H 0.398 0.602 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.104 0.896 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 -16.383 -5.486 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.280 3.720 4 O -0.421 6.421 5 C 0.069 3.931 6 H 0.141 0.859 7 C -0.142 4.142 8 C -0.149 4.149 9 C -0.064 4.064 10 N -0.400 5.400 11 N -0.340 5.340 12 C 0.163 3.837 13 C -0.393 4.393 14 C -0.054 4.054 15 C -0.363 4.363 16 C 0.131 3.869 17 C -0.501 4.501 18 H 0.105 0.895 19 C -0.197 4.197 20 N -0.372 5.372 21 Si 0.807 3.193 22 H -0.178 1.178 23 H -0.189 1.189 24 H -0.194 1.194 25 N -0.282 5.282 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.158 0.842 29 H 0.136 0.864 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.233 0.767 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.122 0.878 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.610 -15.056 -6.410 16.443 hybrid contribution -0.534 -0.114 0.604 0.814 sum -2.144 -15.170 -5.806 16.384 Atomic orbital electron populations 1.23517 0.75450 1.05727 1.01905 1.86495 1.24468 1.32297 1.83857 1.25371 0.93749 0.81385 0.71480 1.90699 1.67663 1.38063 1.45665 1.20594 0.84877 0.83624 1.04013 0.85863 1.21722 0.96287 1.02135 0.94063 1.21465 0.93415 1.01296 0.98726 1.21724 0.87800 0.99085 0.97748 1.58618 1.08652 1.64275 1.08418 1.43987 1.74032 1.09979 1.05952 1.18827 0.89246 0.89627 0.86032 1.20872 1.24817 1.01055 0.92606 1.20988 0.93660 0.93427 0.97312 1.21698 1.19490 0.97310 0.97849 1.18693 0.87905 0.93533 0.86753 1.19979 1.40226 0.95101 0.94804 0.89455 1.26983 0.93699 1.04451 0.94560 1.70258 1.30055 1.37961 0.98967 0.85098 0.78465 0.76019 0.79703 1.17759 1.18948 1.19363 1.68147 1.25263 1.04666 1.30117 0.93172 0.92383 0.84170 0.86411 0.90801 0.93348 0.91192 0.93372 0.91436 0.84102 0.83585 0.76679 0.87070 0.85245 0.87798 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -9.06 10.37 -51.40 -0.53 -9.59 16 3 C 0.44 14.51 7.11 71.24 0.51 15.02 16 4 O -0.53 -22.92 16.10 21.96 0.35 -22.57 16 5 C 0.18 5.42 2.18 44.24 0.10 5.52 16 6 H 0.12 3.55 6.45 -2.39 -0.02 3.53 16 7 C -0.10 -2.22 4.72 30.59 0.14 -2.08 16 8 C -0.11 -2.46 5.36 30.59 0.16 -2.30 16 9 C 0.07 1.19 6.79 86.30 0.59 1.78 16 10 N -0.87 -15.93 9.62 -186.71 -1.80 -17.72 16 11 N -0.70 -28.99 4.21 -328.01 -1.38 -30.37 16 12 C 0.40 20.47 7.53 133.42 1.00 21.47 16 13 C -0.37 -17.26 9.17 22.73 0.21 -17.05 16 14 C -0.03 -1.40 10.15 22.39 0.23 -1.17 16 15 C -0.34 -18.05 9.83 22.87 0.22 -17.83 16 16 C 0.26 15.27 6.55 40.17 0.26 15.53 16 17 C -0.47 -26.92 9.14 23.46 0.21 -26.71 16 18 H 0.09 4.70 7.85 -2.91 -0.02 4.68 16 19 C 0.02 1.33 5.50 85.29 0.47 1.80 16 20 N -0.75 -42.15 11.46 21.84 0.25 -41.90 16 21 Si 0.99 39.99 29.56 68.60 2.03 42.02 16 22 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 25 N -0.56 -32.83 7.89 -186.60 -1.47 -34.31 16 26 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 27 H 0.06 1.20 8.13 -2.38 -0.02 1.18 16 28 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.12 1.83 7.99 -2.39 -0.02 1.81 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.45 7.75 -2.39 -0.02 1.43 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.35 5.60 8.99 -89.70 -0.81 4.80 16 36 H 0.35 4.90 9.08 -89.69 -0.81 4.09 16 37 H 0.40 16.90 8.72 -92.71 -0.81 16.09 16 38 H 0.11 4.49 6.14 -2.91 -0.02 4.47 16 39 H 0.13 5.01 8.06 -2.91 -0.02 4.98 16 40 H 0.10 5.12 8.06 -2.91 -0.02 5.10 16 41 H 0.28 14.00 8.29 -92.71 -0.77 13.23 16 Total: -1.00 -75.67 349.46 1.40 -74.27 By element: Atomic # 1 Polarization: 45.79 SS G_CDS: -1.35 Total: 44.44 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.30 Total: -4.27 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -4.40 Total: -124.29 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.18 Total: -32.16 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -75.67 1.40 -74.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167897998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.706 kcal (2) G-P(sol) polarization free energy of solvation -75.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds