Wall clock time and date at job start Tue Mar 31 2020 03:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 117.00424 * 2 1 4 4 O 1.20824 * 119.99339 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00284 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46833 * 300.00348 * 5 3 2 7 7 C 1.53001 * 109.46880 * 59.99827 * 5 3 2 8 8 C 1.53004 * 109.47032 * 184.99940 * 7 5 3 9 9 C 1.52995 * 109.47269 * 180.02562 * 8 7 5 10 10 N 1.46899 * 109.47303 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.47361 * 179.97438 * 5 3 2 12 12 C 1.39717 * 119.99876 * 84.99816 * 11 5 3 13 13 C 1.39340 * 120.36347 * 0.02562 * 12 11 5 14 14 N 1.31994 * 121.20641 * 179.97438 * 13 12 11 15 15 C 1.31498 * 122.05728 * 359.97438 * 14 13 12 16 16 C 1.40753 * 120.56536 * 0.02562 * 15 14 13 17 17 C 1.41421 * 120.62172 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00110 * 23.48017 * 17 16 15 19 19 C 1.39936 * 120.00260 * 203.47642 * 17 16 15 20 20 N 1.30828 * 119.99838 * 17.53103 * 19 17 16 21 21 Si 1.86795 * 120.00090 * 197.53048 * 19 17 16 22 22 H 1.48504 * 109.47413 * 90.00227 * 21 19 17 23 23 H 1.48501 * 109.46967 * 210.00021 * 21 19 17 24 24 H 1.48505 * 109.47361 * 329.99826 * 21 19 17 25 25 C 1.38662 * 120.36484 * 179.97438 * 12 11 5 26 26 H 1.08998 * 109.46851 * 59.99528 * 1 2 3 27 27 H 1.09000 * 109.47486 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46647 * 300.00223 * 1 2 3 29 29 H 1.08994 * 109.47312 * 304.99773 * 7 5 3 30 30 H 1.08998 * 109.47232 * 65.00254 * 7 5 3 31 31 H 1.08999 * 109.46981 * 300.00790 * 8 7 5 32 32 H 1.08998 * 109.46856 * 60.00083 * 8 7 5 33 33 H 1.09003 * 109.47164 * 299.99959 * 9 8 7 34 34 H 1.08998 * 109.47285 * 60.00136 * 9 8 7 35 35 H 1.00898 * 111.00320 * 179.97438 * 10 9 8 36 36 H 1.00894 * 111.00185 * 303.95682 * 10 9 8 37 37 H 0.96999 * 120.00103 * 265.00130 * 11 5 3 38 38 H 1.07998 * 119.39963 * 359.70487 * 13 12 11 39 39 H 1.07998 * 119.71348 * 179.97438 * 15 14 13 40 40 H 0.97002 * 119.99880 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.92643 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7804 0.8891 7 6 4.1129 0.5814 -1.2502 8 6 5.6414 0.5515 -1.1896 9 6 6.1880 -0.1413 -2.4394 10 7 7.6555 -0.1705 -2.3809 11 7 3.9819 2.6796 -0.0011 12 6 4.0793 3.3797 1.2041 13 6 3.7835 2.7490 2.4109 14 7 3.8705 3.3943 3.5591 15 6 4.2379 4.6552 3.6250 16 6 4.5552 5.3703 2.4549 17 6 4.9500 6.7266 2.5244 18 1 5.3737 7.1196 3.4367 19 6 4.7917 7.5593 1.4110 20 7 3.9867 7.2087 0.4411 21 14 5.7298 9.1714 1.3095 22 1 7.0363 8.9428 0.6416 23 1 4.9394 10.1556 0.5271 24 1 5.9594 9.6977 2.6791 25 6 4.4723 4.7094 1.2125 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.7311 -0.4385 -1.2961 30 1 3.7951 1.1286 -2.1377 31 1 6.0232 1.5714 -1.1435 32 1 5.9592 0.0043 -0.3021 33 1 5.8062 -1.1612 -2.4858 34 1 5.8702 0.4063 -3.3267 35 1 8.0409 -0.6239 -3.1958 36 1 8.0317 0.7593 -2.2722 37 1 4.1893 3.1237 -0.8381 38 1 3.4734 1.7145 2.4064 39 1 4.2958 5.1464 4.5850 40 1 3.8766 7.7861 -0.3305 41 1 4.7090 5.2241 0.2930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167899901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:13 Heat of formation + Delta-G solvation = -64.792880 kcal Electronic energy + Delta-G solvation = -23543.904308 eV Core-core repulsion = 20037.086895 eV Total energy + Delta-G solvation = -3506.817413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.36144 -38.44877 -36.97157 -36.13502 -34.88923 -33.94119 -32.16629 -30.26232 -29.07328 -27.82046 -26.29178 -25.56049 -23.61713 -21.93989 -21.21342 -21.10084 -20.08150 -17.51024 -17.35738 -16.67306 -16.23483 -16.02650 -15.85150 -15.47745 -15.26497 -14.95551 -14.59094 -14.19692 -13.69069 -13.53818 -13.23167 -12.89136 -12.53913 -12.28996 -12.11249 -12.00519 -11.67172 -11.61032 -11.47289 -11.22699 -11.08057 -10.97137 -10.78581 -10.61965 -10.51562 -10.39469 -9.89457 -9.55867 -9.31692 -8.89451 -8.06283 -7.75926 -6.84432 -6.48962 -4.45687 2.48545 2.67012 2.82450 3.04409 3.08183 3.20831 3.25845 3.88646 4.00477 4.30265 4.65454 4.68976 4.88926 4.95949 5.14445 5.16900 5.22807 5.26880 5.40694 5.53071 5.57607 5.66158 5.74590 5.79689 6.08180 6.14114 6.25526 6.50585 6.56094 6.61658 6.89697 6.92483 7.07291 7.15006 7.22302 7.50155 7.67315 7.96093 8.03172 8.17032 8.33951 8.60077 8.76480 8.84888 9.75463 10.11607 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.004679 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.471399 B = 5982.772413 C = 7155.472550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.430 3.570 4 O -0.482 6.482 5 C 0.176 3.824 6 H 0.116 0.884 7 C -0.117 4.117 8 C -0.116 4.116 9 C 0.061 3.939 10 N -0.853 5.853 11 N -0.724 5.724 12 C 0.176 3.824 13 C -0.095 4.095 14 N -0.445 5.445 15 C -0.048 4.048 16 C 0.095 3.905 17 C -0.451 4.451 18 H 0.083 0.917 19 C 0.076 3.924 20 N -0.785 5.785 21 Si 0.910 3.090 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.260 1.260 25 C -0.201 4.201 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.339 0.661 36 H 0.343 0.657 37 H 0.396 0.604 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.281 0.719 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 -12.099 -8.976 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.269 3.731 4 O -0.366 6.366 5 C 0.066 3.934 6 H 0.133 0.867 7 C -0.156 4.156 8 C -0.154 4.154 9 C -0.069 4.069 10 N -0.383 5.383 11 N -0.358 5.358 12 C 0.076 3.924 13 C -0.253 4.253 14 N -0.152 5.152 15 C -0.213 4.213 16 C 0.090 3.910 17 C -0.481 4.481 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.410 5.410 21 Si 0.734 3.266 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.184 1.184 25 C -0.231 4.231 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.231 0.769 38 H 0.126 0.874 39 H 0.141 0.859 40 H 0.092 0.908 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.221 -12.764 -7.709 14.914 hybrid contribution 0.057 2.119 -2.173 3.036 sum 0.278 -10.645 -9.883 14.528 Atomic orbital electron populations 1.23178 0.77274 1.03064 1.02410 1.86515 1.22814 1.34322 1.84689 1.25292 0.93458 0.81371 0.72976 1.90712 1.66581 1.36273 1.43026 1.20275 0.85382 0.86217 1.01551 0.86684 1.21736 0.96413 1.01337 0.96092 1.21547 0.93542 1.01835 0.98498 1.21800 0.87980 1.00464 0.96679 1.58684 1.06443 1.25847 1.47284 1.44101 1.75836 1.08791 1.07047 1.18591 0.96139 0.92160 0.85500 1.21129 1.18048 0.98949 0.87223 1.66813 1.09947 1.10229 1.28189 1.22334 1.10440 0.91007 0.97488 1.18263 0.87909 0.93577 0.91235 1.19563 1.35910 0.93916 0.98693 0.89908 1.25963 0.93293 1.00254 0.94783 1.69853 1.26396 1.37316 1.07411 0.86280 0.80100 0.80585 0.79601 1.19250 1.20334 1.18426 1.21058 1.11588 0.90820 0.99635 0.92338 0.88507 0.92042 0.89425 0.91219 0.91036 0.90513 0.91087 0.95709 0.84901 0.84487 0.76875 0.87412 0.85873 0.90831 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.16 10.37 -39.26 -0.41 -5.57 16 3 C 0.43 7.26 7.19 36.00 0.26 7.51 16 4 O -0.48 -10.20 16.11 -18.75 -0.30 -10.50 16 5 C 0.18 2.64 2.19 -69.09 -0.15 2.49 16 6 H 0.12 1.72 6.50 -51.93 -0.34 1.38 16 7 C -0.12 -1.28 4.72 -26.73 -0.13 -1.40 16 8 C -0.12 -1.24 5.36 -26.73 -0.14 -1.39 16 9 C 0.06 0.56 6.79 -3.83 -0.03 0.53 16 10 N -0.85 -7.73 9.62 -10.37 -0.10 -7.83 16 11 N -0.72 -13.25 4.22 -53.23 -0.22 -13.48 16 12 C 0.18 4.09 6.56 -83.70 -0.55 3.54 16 13 C -0.09 -2.28 10.34 -17.07 -0.18 -2.46 16 14 N -0.44 -11.52 10.33 -12.37 -0.13 -11.65 16 15 C -0.05 -1.26 10.97 -16.74 -0.18 -1.45 16 16 C 0.10 2.57 5.59 -106.70 -0.60 1.98 16 17 C -0.45 -11.82 9.08 -37.74 -0.34 -12.17 16 18 H 0.08 2.07 7.90 -52.49 -0.41 1.65 16 19 C 0.08 1.88 5.18 -17.34 -0.09 1.79 16 20 N -0.79 -20.14 10.91 55.55 0.61 -19.54 16 21 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 25 C -0.20 -5.19 8.67 -38.39 -0.33 -5.52 16 26 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.09 0.83 7.99 -51.93 -0.42 0.41 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.34 2.41 9.08 -39.29 -0.36 2.06 16 36 H 0.34 2.99 8.99 -39.29 -0.35 2.64 16 37 H 0.40 6.84 8.62 -40.82 -0.35 6.49 16 38 H 0.11 2.36 6.19 -52.49 -0.32 2.03 16 39 H 0.12 3.00 8.06 -52.49 -0.42 2.58 16 40 H 0.28 6.55 8.30 -40.82 -0.34 6.22 16 41 H 0.13 3.29 6.19 -52.49 -0.32 2.97 16 LS Contribution 348.23 15.07 5.25 5.25 Total: -1.00 -31.81 348.23 -7.53 -39.33 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -5.80 Total: 15.76 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.39 Total: -5.08 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.15 Total: -52.48 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.71 Total: -16.07 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.81 -7.53 -39.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167899901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.460 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds