Wall clock time and date at job start Tue Mar 31 2020 03:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34225 * 117.00268 * 2 1 4 4 O 1.20829 * 119.99917 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00341 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.46692 * 299.99498 * 5 3 2 7 7 C 1.53001 * 109.47444 * 59.99438 * 5 3 2 8 8 C 1.52998 * 109.47423 * 185.00045 * 7 5 3 9 9 C 1.53000 * 109.46903 * 179.97438 * 8 7 5 10 10 N 1.46900 * 109.47094 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.47492 * 179.97438 * 5 3 2 12 12 C 1.32211 * 119.99774 * 112.96735 * 11 5 3 13 13 C 1.46912 * 120.83881 * 353.84954 * 12 11 5 14 14 C 1.34375 * 119.37427 * 179.97438 * 13 12 11 15 15 N 1.36430 * 121.21933 * 0.02562 * 14 13 12 16 16 H 0.96998 * 119.09056 * 180.02562 * 15 14 13 17 17 C 1.37768 * 121.82237 * 0.02562 * 15 14 13 18 18 C 1.40172 * 119.74502 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99551 * 201.96627 * 18 17 15 20 20 C 1.40351 * 120.00081 * 21.96607 * 18 17 15 21 21 N 1.30578 * 119.99778 * 17.98207 * 20 18 17 22 22 Si 1.86802 * 120.00014 * 197.98892 * 20 18 17 23 23 H 1.48495 * 109.47376 * 89.99569 * 22 20 18 24 24 H 1.48497 * 109.47032 * 209.99823 * 22 20 18 25 25 H 1.48499 * 109.46733 * 329.99657 * 22 20 18 26 26 C 1.39070 * 120.50883 * 359.69686 * 17 15 14 27 27 H 1.09003 * 109.47026 * 59.99730 * 1 2 3 28 28 H 1.08997 * 109.47290 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47564 * 300.00056 * 1 2 3 30 30 H 1.09003 * 109.47104 * 305.00769 * 7 5 3 31 31 H 1.09008 * 109.46787 * 64.99933 * 7 5 3 32 32 H 1.08995 * 109.46998 * 300.00296 * 8 7 5 33 33 H 1.09004 * 109.46576 * 60.00447 * 8 7 5 34 34 H 1.08998 * 109.47174 * 300.00234 * 9 8 7 35 35 H 1.09002 * 109.46713 * 60.00436 * 9 8 7 36 36 H 1.00896 * 111.00263 * 180.02562 * 10 9 8 37 37 H 1.00905 * 110.99797 * 303.95950 * 10 9 8 38 38 H 1.08004 * 120.31396 * 0.02562 * 13 12 11 39 39 H 1.08000 * 119.39201 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00349 * 179.97438 * 21 20 18 41 41 H 1.08000 * 120.63300 * 180.28062 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9563 0.7806 0.8893 7 6 4.1129 0.5814 -1.2501 8 6 5.6414 0.5516 -1.1894 9 6 6.1879 -0.1424 -2.4387 10 7 7.6555 -0.1716 -2.3801 11 7 3.9817 2.6796 -0.0011 12 6 4.5980 3.1871 1.0528 13 6 4.7566 2.4006 2.2835 14 6 5.3885 2.9453 3.3370 15 7 5.8848 4.2150 3.2848 16 1 6.3359 4.5774 4.0633 17 6 5.7631 4.9967 2.1569 18 6 6.2891 6.2961 2.1512 19 1 5.9125 7.0279 1.4519 20 6 7.3049 6.6459 3.0543 21 7 8.0018 5.7136 3.6462 22 14 7.6599 8.4451 3.4096 23 1 6.8287 8.8971 4.5541 24 1 9.0969 8.6090 3.7462 25 1 7.3363 9.2595 2.2107 26 6 5.1276 4.5047 1.0220 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.7311 -0.4385 -1.2961 31 1 3.7951 1.1286 -2.1377 32 1 6.0232 1.5714 -1.1435 33 1 5.9591 0.0043 -0.3019 34 1 5.8061 -1.1623 -2.4841 35 1 5.8702 0.4045 -3.3264 36 1 8.0409 -0.6250 -3.1949 37 1 8.0316 0.7584 -2.2723 38 1 4.3697 1.3939 2.3408 39 1 5.5056 2.3672 4.2417 40 1 8.7041 5.9554 4.2701 41 1 5.0350 5.1141 0.1352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167900908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:15 Heat of formation + Delta-G solvation = -77.367256 kcal Electronic energy + Delta-G solvation = -23312.518770 eV Core-core repulsion = 19805.156092 eV Total energy + Delta-G solvation = -3507.362679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42794 -40.31844 -37.92465 -37.25582 -36.22265 -35.31504 -33.39821 -32.36823 -30.43011 -29.26504 -28.17174 -27.12845 -24.45723 -23.36851 -22.77726 -22.08285 -21.00141 -19.83455 -18.53447 -18.41874 -17.71215 -17.42334 -16.99789 -16.83077 -16.40414 -16.26837 -15.75543 -15.48281 -14.96940 -14.64161 -14.57707 -14.37333 -14.26125 -13.69043 -13.35428 -13.21119 -13.09330 -12.98745 -12.80311 -12.57306 -12.49506 -12.41107 -12.00126 -11.86075 -11.78305 -11.73516 -11.57648 -11.32480 -10.95065 -10.02601 -9.62701 -9.33786 -9.01016 -7.81605 -6.68255 0.90198 0.99526 1.26564 1.41881 1.54941 1.55983 1.92740 2.15528 2.56601 2.89340 3.46771 3.58587 3.88220 3.99035 4.10468 4.19609 4.22939 4.29131 4.31853 4.35132 4.51900 4.63599 4.67094 4.73932 4.79021 4.91542 4.96359 4.99999 5.03047 5.15905 5.32049 5.38854 5.43814 5.60853 5.76809 5.96444 6.06743 6.19844 6.39338 6.48540 6.59808 6.88991 6.97479 7.16205 7.87427 8.00901 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.004142 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.918003 B = 6758.787008 C = 7976.654929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.458 3.542 4 O -0.537 6.537 5 C 0.098 3.902 6 H 0.076 0.924 7 C -0.083 4.083 8 C -0.099 4.099 9 C 0.070 3.930 10 N -0.859 5.859 11 N -0.677 5.677 12 C 0.278 3.722 13 C -0.327 4.327 14 C 0.144 3.856 15 N -0.600 5.600 16 H 0.419 0.581 17 C 0.322 3.678 18 C -0.491 4.491 19 H 0.095 0.905 20 C 0.053 3.947 21 N -0.816 5.816 22 Si 0.994 3.006 23 H -0.255 1.255 24 H -0.262 1.262 25 H -0.264 1.264 26 C -0.397 4.397 27 H 0.055 0.945 28 H 0.139 0.861 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.026 0.974 36 H 0.351 0.649 37 H 0.341 0.659 38 H 0.133 0.867 39 H 0.186 0.814 40 H 0.308 0.692 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 -8.926 0.420 8.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.426 6.426 5 C -0.016 4.016 6 H 0.093 0.907 7 C -0.122 4.122 8 C -0.137 4.137 9 C -0.061 4.061 10 N -0.389 5.389 11 N -0.406 5.406 12 C 0.118 3.882 13 C -0.356 4.356 14 C 0.015 3.985 15 N -0.211 5.211 16 H 0.260 0.740 17 C 0.213 3.787 18 C -0.523 4.523 19 H 0.113 0.887 20 C -0.166 4.166 21 N -0.443 5.443 22 Si 0.814 3.186 23 H -0.179 1.179 24 H -0.186 1.186 25 H -0.188 1.188 26 C -0.426 4.426 27 H 0.074 0.926 28 H 0.157 0.843 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.165 0.835 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.203 0.797 40 H 0.120 0.880 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.480 -9.038 0.326 9.164 hybrid contribution -0.019 1.205 0.056 1.207 sum -1.498 -7.833 0.382 7.984 Atomic orbital electron populations 1.23498 0.75672 1.05626 1.01870 1.86530 1.24467 1.32937 1.84092 1.25024 0.93128 0.80936 0.70835 1.90572 1.67730 1.38073 1.46184 1.21173 0.84980 0.95146 1.00307 0.90669 1.21349 0.95831 0.99583 0.95434 1.21302 0.94083 0.99717 0.98611 1.21712 0.88138 1.00603 0.95633 1.58714 1.06290 1.25970 1.47959 1.73524 1.30737 1.08523 1.27830 1.20424 0.86501 0.92636 0.88664 1.22344 1.14611 1.02355 0.96293 1.21942 0.91574 0.85365 0.99647 1.42109 1.51670 1.12155 1.15173 0.73964 1.17720 0.87863 0.89208 0.83959 1.19746 1.18124 0.96012 1.18441 0.88727 1.26902 0.92377 1.05303 0.92063 1.69304 1.15911 1.37485 1.21598 0.84980 0.78629 0.75189 0.79798 1.17906 1.18641 1.18832 1.20129 1.26095 0.97792 0.98559 0.92628 0.84263 0.92876 0.89187 0.92984 0.94358 0.92201 0.89735 0.95607 0.83541 0.84675 0.84905 0.79670 0.88015 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 16 2 O -0.36 -11.85 10.37 -51.37 -0.53 -12.39 16 3 C 0.46 18.92 7.32 71.24 0.52 19.45 16 4 O -0.54 -26.47 16.18 21.96 0.36 -26.12 16 5 C 0.10 4.01 2.69 44.25 0.12 4.13 16 6 H 0.08 2.95 5.35 -2.38 -0.01 2.94 16 7 C -0.08 -2.84 4.85 30.59 0.15 -2.69 16 8 C -0.10 -3.27 5.36 30.59 0.16 -3.11 16 9 C 0.07 1.82 6.79 86.30 0.59 2.41 16 10 N -0.86 -21.06 9.62 -186.72 -1.80 -22.85 16 11 N -0.68 -34.05 9.16 -318.13 -2.91 -36.96 16 12 C 0.28 14.10 6.80 42.30 0.29 14.39 16 13 C -0.33 -13.82 9.34 23.66 0.22 -13.60 16 14 C 0.14 5.38 11.15 83.09 0.93 6.31 16 15 N -0.60 -25.49 4.89 -188.19 -0.92 -26.41 16 16 H 0.42 16.58 6.32 -92.71 -0.59 16.00 16 17 C 0.32 16.03 6.37 38.88 0.25 16.28 16 18 C -0.49 -23.57 9.02 23.25 0.21 -23.36 16 19 H 0.09 4.58 7.91 -2.91 -0.02 4.55 16 20 C 0.05 2.18 5.17 85.39 0.44 2.62 16 21 N -0.82 -33.50 11.13 21.89 0.24 -33.25 16 22 Si 0.99 31.89 29.60 68.60 2.03 33.92 16 23 H -0.25 -7.82 7.11 99.48 0.71 -7.12 16 24 H -0.26 -7.90 7.11 99.48 0.71 -7.19 16 25 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 26 C -0.40 -21.43 9.83 23.41 0.23 -21.20 16 27 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 28 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.09 2.53 8.00 -2.39 -0.02 2.52 16 31 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.04 1.54 7.75 -2.39 -0.02 1.52 16 33 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.35 6.64 9.08 -89.70 -0.81 5.83 16 37 H 0.34 8.67 8.99 -89.69 -0.81 7.86 16 38 H 0.13 5.01 6.01 -2.91 -0.02 4.99 16 39 H 0.19 4.83 8.06 -2.91 -0.02 4.80 16 40 H 0.31 11.04 8.29 -92.71 -0.77 10.27 16 41 H 0.09 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -66.28 348.30 0.64 -65.65 By element: Atomic # 1 Polarization: 56.07 SS G_CDS: -1.13 Total: 54.94 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 5.30 Total: 3.48 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -5.39 Total: -119.48 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.18 Total: -38.51 kcal Atomic # 14 Polarization: 31.89 SS G_CDS: 2.03 Total: 33.92 kcal Total: -66.28 0.64 -65.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167900908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.720 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds