Wall clock time and date at job start Tue Mar 31 2020 03:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00576 * 2 1 4 4 C 1.52998 * 109.47213 * 124.99978 * 3 2 1 5 5 N 1.46495 * 109.47184 * 180.02562 * 4 3 2 6 6 C 1.34820 * 126.59519 * 125.00442 * 5 4 3 7 7 C 1.36597 * 106.83727 * 180.24451 * 6 5 4 8 8 C 1.47527 * 125.76547 * 179.71308 * 7 6 5 9 9 O 1.21593 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99610 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00232 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47474 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46953 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.46747 * 180.02562 * 13 12 11 15 15 C 1.36940 * 119.99737 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00295 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99964 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99605 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00005 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47394 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47284 * 119.99728 * 19 17 15 22 22 H 1.48499 * 109.47447 * 240.00196 * 19 17 15 23 23 N 1.34396 * 108.45930 * 359.56394 * 7 6 5 24 24 N 1.28759 * 109.52721 * 0.44454 * 23 7 6 25 25 H 1.07995 * 119.99372 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.00252 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99626 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46518 * 5.00558 * 3 2 1 29 29 H 1.08997 * 109.47292 * 245.00278 * 3 2 1 30 30 H 1.09003 * 109.47199 * 60.00383 * 4 3 2 31 31 H 1.09007 * 109.47292 * 300.00330 * 4 3 2 32 32 H 1.08002 * 126.57680 * 359.97185 * 6 5 4 33 33 H 0.97003 * 120.00203 * 359.97438 * 10 8 7 34 34 H 1.09006 * 109.46702 * 300.00219 * 11 10 8 35 35 H 1.08996 * 109.47356 * 59.99751 * 11 10 8 36 36 H 1.08992 * 109.46977 * 299.99709 * 12 11 10 37 37 H 1.08997 * 109.47082 * 60.00406 * 12 11 10 38 38 H 1.09006 * 109.47024 * 299.99891 * 13 12 11 39 39 H 1.08994 * 109.47056 * 59.99590 * 13 12 11 40 40 H 0.96996 * 120.00582 * 359.97438 * 14 13 12 41 41 H 0.97004 * 119.99212 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 7 3.7673 2.6018 1.1820 6 6 3.8485 3.4827 2.1994 7 6 4.6232 4.5200 1.7638 8 6 4.9771 5.7196 2.5462 9 8 4.5685 5.8455 3.6845 10 7 5.7533 6.6759 1.9992 11 6 6.1053 7.8670 2.7761 12 6 6.9865 8.7868 1.9286 13 6 7.3536 10.0310 2.7400 14 7 8.1968 10.9120 1.9283 15 6 8.6518 12.0942 2.4484 16 1 8.3886 12.3774 3.4569 17 6 9.4513 12.9288 1.6795 18 7 9.7724 12.5835 0.4507 19 14 10.0713 14.5418 2.3887 20 1 9.5723 14.6957 3.7789 21 1 11.5564 14.5427 2.3924 22 1 9.5777 15.6699 1.5586 23 7 5.0111 4.2614 0.5033 24 7 4.5190 3.1335 0.1244 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3587 2.1316 0.0897 29 1 2.6214 1.4025 -0.9314 30 1 3.7401 0.5064 1.0920 31 1 2.4774 1.2354 2.1131 32 1 3.3857 3.3885 3.1707 33 1 6.0795 6.5753 1.0912 34 1 5.1962 8.3966 3.0610 35 1 6.6480 7.5685 3.6730 36 1 7.8956 8.2574 1.6434 37 1 6.4434 9.0854 1.0321 38 1 6.4442 10.5603 3.0249 39 1 7.8964 9.7328 3.6369 40 1 8.4335 10.6576 1.0227 41 1 10.3314 13.1666 -0.0865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167990965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:26 Heat of formation + Delta-G solvation = 81.287240 kcal Electronic energy + Delta-G solvation = -21488.797746 eV Core-core repulsion = 18020.607594 eV Total energy + Delta-G solvation = -3468.190152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.50939 -39.39700 -36.93525 -35.99784 -34.42729 -34.11812 -32.01195 -31.30823 -30.05628 -29.21715 -25.61646 -25.04331 -23.64996 -22.27156 -22.18766 -21.13698 -20.54297 -20.27412 -18.28636 -17.01648 -16.56437 -16.53665 -16.08557 -15.86945 -15.56611 -14.99192 -14.75413 -14.60138 -14.08218 -13.98472 -13.59286 -13.28167 -13.23738 -12.93756 -12.50868 -12.39102 -12.15629 -11.79496 -11.65515 -11.49287 -10.91426 -10.89488 -10.76419 -10.75662 -10.57423 -10.20584 -10.04854 -9.96819 -9.67569 -9.60311 -8.99887 -8.84551 -6.89102 -5.73405 -3.02138 0.80786 1.47041 1.50157 1.74663 3.10498 3.19056 3.46445 3.51986 3.54393 3.82149 3.92941 4.07163 4.28177 4.46844 4.53462 4.59253 4.62472 4.66950 4.85868 5.08564 5.17383 5.27318 5.30269 5.36930 5.51145 5.61398 5.69123 5.92848 5.98006 6.02267 6.06186 6.11890 6.24745 6.37624 6.46945 6.84401 6.88581 7.40325 7.70435 7.74270 8.12727 8.45566 9.56703 10.14500 10.49108 11.49673 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048180 B = 0.001856 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.009541 B =15086.170647 C =15415.208062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C -0.107 4.107 4 C 0.126 3.874 5 N -0.363 5.363 6 C 0.093 3.907 7 C -0.099 4.099 8 C 0.602 3.398 9 O -0.543 6.543 10 N -0.710 5.710 11 C 0.123 3.877 12 C -0.139 4.139 13 C 0.157 3.843 14 N -0.734 5.734 15 C -0.239 4.239 16 H 0.072 0.928 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 N -0.202 5.202 24 N -0.063 5.063 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.205 0.795 33 H 0.409 0.591 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.371 -28.952 0.888 34.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.178 4.178 3 C -0.145 4.145 4 C 0.005 3.995 5 N -0.148 5.148 6 C -0.064 4.064 7 C -0.239 4.239 8 C 0.385 3.615 9 O -0.419 6.419 10 N -0.360 5.360 11 C 0.000 4.000 12 C -0.177 4.177 13 C 0.029 3.971 14 N -0.378 5.378 15 C -0.370 4.370 16 H 0.090 0.910 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 N -0.076 5.076 24 N -0.043 5.043 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.133 0.867 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.222 0.778 33 H 0.245 0.755 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.217 0.783 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.158 -28.944 0.405 34.170 hybrid contribution 0.191 0.708 0.537 0.909 sum -17.967 -28.236 0.942 33.481 Atomic orbital electron populations 1.23977 0.95893 1.02371 0.99335 1.22731 0.96017 0.97610 1.01487 1.21032 0.98009 0.96843 0.98605 1.22045 0.94488 0.81331 1.01610 1.50567 1.35880 1.17493 1.10860 1.23397 0.98379 0.89217 0.95374 1.21537 1.08498 1.00201 0.93635 1.16737 0.78587 0.81001 0.85130 1.90811 1.54895 1.78651 1.17575 1.45877 1.50896 1.20509 1.18745 1.21425 0.99496 0.84441 0.94681 1.21956 0.99447 0.96834 0.99473 1.20521 0.94067 0.89008 0.93554 1.42349 1.59381 1.20815 1.15266 1.19303 1.24340 0.95579 0.97825 0.91028 1.24755 1.00921 0.99148 0.96287 1.69677 1.41820 1.38135 1.08613 0.86098 0.78304 0.83652 0.78038 1.20520 1.21875 1.21882 1.74665 1.15163 1.07559 1.10250 1.81989 1.08950 1.05028 1.08364 0.88349 0.87961 0.86678 0.90504 0.88965 0.88078 0.87497 0.77833 0.75541 0.91057 0.91050 0.91138 0.91142 0.96026 0.96024 0.78260 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.58 14.32 29.01 0.42 -0.16 16 2 C -0.16 -0.49 9.52 -36.03 -0.34 -0.84 16 3 C -0.11 -0.43 5.86 -27.88 -0.16 -0.59 16 4 C 0.13 0.45 6.52 -4.05 -0.03 0.42 16 5 N -0.36 -2.78 3.69 -61.06 -0.23 -3.01 16 6 C 0.09 0.78 11.27 -16.83 -0.19 0.59 16 7 C -0.10 -1.16 6.99 -83.55 -0.58 -1.75 16 8 C 0.60 8.23 7.82 -12.48 -0.10 8.13 16 9 O -0.54 -8.65 16.86 5.28 0.09 -8.56 16 10 N -0.71 -9.35 5.55 -61.35 -0.34 -9.70 16 11 C 0.12 1.74 5.67 -4.04 -0.02 1.71 16 12 C -0.14 -2.22 5.44 -26.73 -0.15 -2.36 16 13 C 0.16 3.18 6.26 -4.04 -0.03 3.16 16 14 N -0.73 -19.03 5.60 -59.91 -0.34 -19.36 16 15 C -0.24 -6.86 9.99 -15.05 -0.15 -7.01 16 16 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 19 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 N -0.20 -2.53 12.04 32.85 0.40 -2.14 16 24 N -0.06 -0.70 13.65 60.35 0.82 0.13 16 25 H 0.10 0.32 7.84 -52.49 -0.41 -0.09 16 26 H 0.10 0.24 8.06 -52.49 -0.42 -0.18 16 27 H 0.12 0.23 8.06 -52.48 -0.42 -0.19 16 28 H 0.08 0.36 7.79 -51.93 -0.40 -0.05 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.11 0.13 8.08 -51.92 -0.42 -0.29 16 32 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.41 4.96 8.16 -40.82 -0.33 4.63 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 41 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -35.12 361.49 -5.95 -41.07 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.08 Total: 5.60 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.43 Total: 0.76 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 1.04 Total: -62.06 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.12 -5.95 -41.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167990965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.357 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds