Wall clock time and date at job start Tue Mar 31 2020 03:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00576 * 2 1 4 4 C 1.52998 * 109.47213 * 124.99978 * 3 2 1 5 5 N 1.46495 * 109.47184 * 180.02562 * 4 3 2 6 6 C 1.34820 * 126.59519 * 125.00442 * 5 4 3 7 7 C 1.36597 * 106.83727 * 180.24451 * 6 5 4 8 8 C 1.47527 * 125.76547 * 179.71308 * 7 6 5 9 9 O 1.21593 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99610 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00232 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47474 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46953 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.46747 * 180.02562 * 13 12 11 15 15 C 1.36940 * 119.99737 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00295 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99964 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99605 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00005 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47394 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47284 * 119.99728 * 19 17 15 22 22 H 1.48499 * 109.47447 * 240.00196 * 19 17 15 23 23 N 1.34396 * 108.45930 * 359.56394 * 7 6 5 24 24 N 1.28759 * 109.52721 * 0.44454 * 23 7 6 25 25 H 1.07995 * 119.99372 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.00252 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99626 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46518 * 5.00558 * 3 2 1 29 29 H 1.08997 * 109.47292 * 245.00278 * 3 2 1 30 30 H 1.09003 * 109.47199 * 60.00383 * 4 3 2 31 31 H 1.09007 * 109.47292 * 300.00330 * 4 3 2 32 32 H 1.08002 * 126.57680 * 359.97185 * 6 5 4 33 33 H 0.97003 * 120.00203 * 359.97438 * 10 8 7 34 34 H 1.09006 * 109.46702 * 300.00219 * 11 10 8 35 35 H 1.08996 * 109.47356 * 59.99751 * 11 10 8 36 36 H 1.08992 * 109.46977 * 299.99709 * 12 11 10 37 37 H 1.08997 * 109.47082 * 60.00406 * 12 11 10 38 38 H 1.09006 * 109.47024 * 299.99891 * 13 12 11 39 39 H 1.08994 * 109.47056 * 59.99590 * 13 12 11 40 40 H 0.96996 * 120.00582 * 359.97438 * 14 13 12 41 41 H 0.97004 * 119.99212 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 7 3.7673 2.6018 1.1820 6 6 3.8485 3.4827 2.1994 7 6 4.6232 4.5200 1.7638 8 6 4.9771 5.7196 2.5462 9 8 4.5685 5.8455 3.6845 10 7 5.7533 6.6759 1.9992 11 6 6.1053 7.8670 2.7761 12 6 6.9865 8.7868 1.9286 13 6 7.3536 10.0310 2.7400 14 7 8.1968 10.9120 1.9283 15 6 8.6518 12.0942 2.4484 16 1 8.3886 12.3774 3.4569 17 6 9.4513 12.9288 1.6795 18 7 9.7724 12.5835 0.4507 19 14 10.0713 14.5418 2.3887 20 1 9.5723 14.6957 3.7789 21 1 11.5564 14.5427 2.3924 22 1 9.5777 15.6699 1.5586 23 7 5.0111 4.2614 0.5033 24 7 4.5190 3.1335 0.1244 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3587 2.1316 0.0897 29 1 2.6214 1.4025 -0.9314 30 1 3.7401 0.5064 1.0920 31 1 2.4774 1.2354 2.1131 32 1 3.3857 3.3885 3.1707 33 1 6.0795 6.5753 1.0912 34 1 5.1962 8.3966 3.0610 35 1 6.6480 7.5685 3.6730 36 1 7.8956 8.2574 1.6434 37 1 6.4434 9.0854 1.0321 38 1 6.4442 10.5603 3.0249 39 1 7.8964 9.7328 3.6369 40 1 8.4335 10.6576 1.0227 41 1 10.3314 13.1666 -0.0865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167990965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:25 Heat of formation + Delta-G solvation = 55.504980 kcal Electronic energy + Delta-G solvation = -21489.915749 eV Core-core repulsion = 18020.607594 eV Total energy + Delta-G solvation = -3469.308155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.25731 -40.46797 -37.50560 -37.32034 -35.92198 -34.74313 -33.73169 -32.21009 -31.24494 -30.16779 -27.14280 -25.58576 -25.07838 -23.67847 -22.82737 -22.54164 -21.30183 -20.75580 -19.34929 -18.84012 -17.28183 -17.25593 -17.21682 -16.66751 -16.54455 -16.22831 -15.71544 -15.57347 -15.30274 -15.26604 -14.92405 -14.60306 -13.99547 -13.79775 -13.67512 -13.29742 -13.13636 -12.83661 -12.67611 -12.57409 -12.41296 -12.19339 -12.05186 -12.02870 -12.01974 -11.78351 -11.34097 -11.26504 -10.94212 -10.46287 -10.28894 -10.05710 -9.00383 -7.95249 -5.24526 0.12965 0.58902 1.02758 1.40925 1.48744 1.49708 1.60109 2.09231 2.21263 2.57437 3.16189 3.36299 3.38870 3.76064 3.77735 3.82223 3.93828 4.04267 4.10514 4.22298 4.30720 4.36626 4.39900 4.45646 4.61346 4.73847 4.75906 4.82497 4.90209 4.97785 5.07128 5.27880 5.33666 5.38309 5.43063 5.50678 5.72616 5.82709 6.27283 6.39024 6.87697 7.09655 7.33603 8.08943 8.32243 9.28620 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048180 B = 0.001856 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.009541 B =15086.170647 C =15415.208062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C -0.103 4.103 4 C 0.118 3.882 5 N -0.349 5.349 6 C 0.113 3.887 7 C -0.126 4.126 8 C 0.604 3.396 9 O -0.569 6.569 10 N -0.708 5.708 11 C 0.134 3.866 12 C -0.121 4.121 13 C 0.153 3.847 14 N -0.748 5.748 15 C -0.249 4.249 16 H 0.077 0.923 17 C -0.077 4.077 18 N -0.970 5.970 19 Si 0.976 3.024 20 H -0.265 1.265 21 H -0.292 1.292 22 H -0.292 1.292 23 N -0.227 5.227 24 N -0.086 5.086 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.129 0.871 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.239 0.761 33 H 0.414 0.586 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.375 0.625 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.442 -30.373 2.113 36.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.177 4.177 3 C -0.141 4.141 4 C -0.001 4.001 5 N -0.133 5.133 6 C -0.045 4.045 7 C -0.266 4.266 8 C 0.389 3.611 9 O -0.448 6.448 10 N -0.359 5.359 11 C 0.010 3.990 12 C -0.159 4.159 13 C 0.026 3.974 14 N -0.391 5.391 15 C -0.380 4.380 16 H 0.095 0.905 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.805 3.195 20 H -0.190 1.190 21 H -0.219 1.219 22 H -0.220 1.220 23 N -0.100 5.100 24 N -0.066 5.066 25 H 0.113 0.887 26 H 0.129 0.871 27 H 0.147 0.853 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.255 0.745 33 H 0.250 0.750 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.206 0.794 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.255 -30.409 1.630 36.030 hybrid contribution 0.422 1.019 0.174 1.117 sum -18.833 -29.390 1.803 34.953 Atomic orbital electron populations 1.24102 0.96115 1.02715 0.99292 1.22761 0.95945 0.97538 1.01449 1.20956 0.97797 0.97206 0.98137 1.22501 0.94739 0.79876 1.02954 1.50838 1.34647 1.18110 1.09728 1.23878 0.96546 0.87812 0.96258 1.21439 1.10617 1.00709 0.93845 1.16944 0.77921 0.81337 0.84900 1.90787 1.55961 1.79350 1.18653 1.45807 1.50941 1.20218 1.18889 1.21197 0.99003 0.84504 0.94248 1.21720 0.99846 0.95340 0.99027 1.20683 0.93211 0.89864 0.93626 1.42571 1.60075 1.21044 1.15402 1.19721 1.23787 0.96469 0.98049 0.90478 1.25609 1.01734 1.02755 0.96778 1.69830 1.42849 1.39414 1.09953 0.85034 0.77342 0.79247 0.77895 1.18969 1.21933 1.21952 1.74635 1.16099 1.08414 1.10860 1.81910 1.09992 1.04984 1.09754 0.88719 0.87054 0.85335 0.91350 0.90576 0.86400 0.84210 0.74493 0.74977 0.91065 0.91036 0.91058 0.91080 0.95659 0.95644 0.79356 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.90 14.32 67.78 0.97 0.07 16 2 C -0.16 -0.67 9.52 25.65 0.24 -0.43 16 3 C -0.10 -0.67 5.86 29.85 0.17 -0.49 16 4 C 0.12 0.52 6.52 86.38 0.56 1.08 16 5 N -0.35 -4.66 3.69 -347.09 -1.28 -5.94 16 6 C 0.11 1.65 11.27 83.85 0.95 2.60 16 7 C -0.13 -2.84 6.99 40.82 0.29 -2.56 16 8 C 0.60 16.09 7.82 86.69 0.68 16.77 16 9 O -0.57 -17.59 16.86 -4.01 -0.07 -17.66 16 10 N -0.71 -18.31 5.55 -466.28 -2.59 -20.90 16 11 C 0.13 3.69 5.67 86.38 0.49 4.18 16 12 C -0.12 -3.81 5.44 30.60 0.17 -3.64 16 13 C 0.15 6.15 6.26 86.38 0.54 6.69 16 14 N -0.75 -38.91 5.60 -343.44 -1.92 -40.84 16 15 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 16 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 17 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 18 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 19 Si 0.98 46.79 29.55 68.60 2.03 48.82 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 23 N -0.23 -5.61 12.04 -49.99 -0.60 -6.21 16 24 N -0.09 -1.85 13.65 37.02 0.51 -1.35 16 25 H 0.09 0.51 7.84 -2.91 -0.02 0.49 16 26 H 0.11 0.33 8.06 -2.91 -0.02 0.31 16 27 H 0.13 0.20 8.06 -2.91 -0.02 0.18 16 28 H 0.07 0.56 7.79 -2.38 -0.02 0.54 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.12 0.21 8.14 -2.39 -0.02 0.20 16 31 H 0.14 -0.23 8.08 -2.38 -0.02 -0.25 16 32 H 0.24 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.41 9.96 8.16 -92.71 -0.76 9.20 16 34 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.37 20.55 7.67 -92.71 -0.71 19.84 16 41 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -75.45 361.49 2.29 -73.16 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.43 Total: 24.03 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 6.37 Total: 6.89 kcal Atomic # 7 Polarization: -129.64 SS G_CDS: -5.61 Total: -135.24 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.07 Total: -17.66 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -75.45 2.29 -73.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167990965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.662 kcal (2) G-P(sol) polarization free energy of solvation -75.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds