Wall clock time and date at job start Tue Mar 31 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48501 * 109.46912 * 240.00039 * 3 2 1 5 5 H 1.48496 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46815 * 120.00215 * 3 2 1 7 7 C 1.38811 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00203 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47251 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46924 * 179.97438 * 11 10 9 13 13 N 1.46504 * 109.46681 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 11 15 15 O 1.21603 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.47523 * 120.00283 * 180.27861 * 14 13 12 17 17 C 1.36594 * 125.77562 * 179.73080 * 16 14 13 18 18 N 1.34812 * 106.84324 * 179.97438 * 17 16 14 19 19 C 1.46496 * 126.59720 * 179.97438 * 18 17 16 20 20 C 1.53004 * 109.46815 * 124.99861 * 19 18 17 21 21 C 1.52997 * 117.49611 * 243.62327 * 20 19 18 22 22 C 1.53000 * 117.49422 * 175.00042 * 20 19 18 23 23 N 1.40210 * 106.80939 * 359.97438 * 18 17 16 24 24 N 1.28767 * 108.36771 * 359.72209 * 23 18 17 25 25 H 0.96998 * 120.00171 * 359.97438 * 1 2 3 26 26 H 0.97003 * 119.99447 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47276 * 60.00244 * 10 9 7 28 28 H 1.08997 * 109.47264 * 300.00191 * 10 9 7 29 29 H 1.09000 * 109.46573 * 60.00570 * 11 10 9 30 30 H 1.08997 * 109.47029 * 300.00196 * 11 10 9 31 31 H 1.08998 * 109.47328 * 60.00273 * 12 11 10 32 32 H 1.08997 * 109.47540 * 300.00020 * 12 11 10 33 33 H 0.96990 * 120.00418 * 0.02562 * 13 12 11 34 34 H 1.08005 * 126.57383 * 359.97438 * 17 16 14 35 35 H 1.08996 * 109.47232 * 245.00366 * 19 18 17 36 36 H 1.08998 * 109.46946 * 5.00392 * 19 18 17 37 37 H 1.08995 * 115.54951 * 29.33850 * 20 19 18 38 38 H 1.08994 * 117.50234 * 0.02562 * 21 20 19 39 39 H 1.09007 * 117.49599 * 145.02633 * 21 20 19 40 40 H 1.09002 * 117.49584 * 214.97991 * 22 20 19 41 41 H 1.09001 * 117.50486 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8198 -0.0012 12 6 1.8289 -6.1447 -0.0018 13 7 0.8768 -7.2582 -0.0018 14 6 1.3261 -8.5289 -0.0029 15 8 2.5217 -8.7511 -0.0033 16 6 0.3675 -9.6503 -0.0091 17 6 0.6911 -10.9773 -0.0160 18 7 -0.4700 -11.6624 -0.0194 19 6 -0.6245 -13.1192 -0.0274 20 6 -1.5007 -13.5455 1.1523 21 6 -0.8599 -14.4278 2.2255 22 6 -1.8791 -15.0246 1.2528 23 7 -1.5013 -10.7125 -0.0138 24 7 -0.9718 -9.5388 -0.0015 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6847 -3.7145 0.8894 28 1 2.6847 -3.7145 -0.8905 29 1 0.4376 -4.7618 -0.8915 30 1 0.4368 -4.7622 0.8885 31 1 2.4555 -6.2029 0.8881 32 1 2.4556 -6.2020 -0.8918 33 1 -0.0767 -7.0811 -0.0018 34 1 1.6862 -11.3971 -0.0182 35 1 -1.0950 -13.4295 -0.9603 36 1 0.3552 -13.5889 0.0593 37 1 -2.2401 -12.8137 1.4773 38 1 0.1858 -14.7042 2.0915 39 1 -1.1777 -14.2764 3.2572 40 1 -2.8673 -15.2657 1.6445 41 1 -1.5036 -15.6940 0.4788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169530953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:23 Heat of formation + Delta-G solvation = 90.698083 kcal Electronic energy + Delta-G solvation = -21638.154538 eV Core-core repulsion = 18170.372470 eV Total energy + Delta-G solvation = -3467.782067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.49772 -39.40317 -38.30722 -35.99114 -34.61019 -34.20657 -32.00447 -31.22071 -29.56300 -28.34147 -25.49019 -23.71637 -23.11098 -22.94093 -22.23135 -21.49848 -21.11017 -20.15208 -18.44376 -17.08459 -16.72658 -16.48456 -16.08627 -15.70188 -15.44263 -14.90386 -14.82536 -14.58206 -14.33377 -13.94357 -13.78532 -13.22139 -12.95412 -12.71137 -12.39372 -12.29790 -12.19371 -11.67059 -11.51762 -11.22396 -10.93740 -10.90524 -10.86785 -10.76714 -10.58072 -10.55627 -10.21742 -10.00850 -9.66272 -9.59112 -8.99191 -8.83098 -6.88751 -5.72547 -3.01463 0.82752 1.50528 1.61635 3.02071 3.12935 3.19998 3.47903 3.51725 3.53176 3.64950 3.95193 4.06064 4.22879 4.27744 4.47635 4.52880 4.63063 4.68998 4.70437 4.97943 5.06283 5.18399 5.22597 5.37427 5.42974 5.45181 5.51973 5.61804 5.69636 5.99149 6.02833 6.12405 6.25303 6.38163 6.47600 6.84877 6.89095 7.41232 7.71683 7.73715 8.13483 8.46394 9.57286 10.15127 10.49766 11.50370 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.047014 B = 0.001916 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.426782 B =14612.038096 C =14946.564642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.157 3.843 11 C -0.139 4.139 12 C 0.123 3.877 13 N -0.710 5.710 14 C 0.602 3.398 15 O -0.543 6.543 16 C -0.099 4.099 17 C 0.093 3.907 18 N -0.359 5.359 19 C 0.154 3.846 20 C -0.178 4.178 21 C -0.176 4.176 22 C -0.164 4.164 23 N -0.062 5.062 24 N -0.203 5.203 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.409 0.591 34 H 0.205 0.795 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.237 -34.064 1.158 34.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.029 3.971 11 C -0.177 4.177 12 C 0.000 4.000 13 N -0.360 5.360 14 C 0.386 3.614 15 O -0.420 6.420 16 C -0.239 4.239 17 C -0.063 4.063 18 N -0.144 5.144 19 C 0.033 3.967 20 C -0.196 4.196 21 C -0.213 4.213 22 C -0.202 4.202 23 N -0.042 5.042 24 N -0.077 5.077 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.245 0.755 34 H 0.221 0.779 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.755 -33.889 1.155 34.021 hybrid contribution 0.667 0.689 0.014 0.959 sum -2.088 -33.201 1.169 33.287 Atomic orbital electron populations 1.69651 1.05120 1.25762 1.57754 1.24753 0.95549 0.97731 1.03034 0.86239 0.78486 0.83441 0.77856 1.21258 1.21697 1.21256 1.19208 0.91075 0.84159 1.42744 0.91142 1.42333 1.05897 0.99963 1.89597 1.20518 0.93250 0.85184 0.98189 1.21956 0.99609 0.93159 1.02986 1.21423 0.91595 0.84362 1.02655 1.45875 1.11514 1.05109 1.73530 1.16740 0.86353 0.81753 0.76594 1.90812 1.15112 1.84685 1.51352 1.21525 0.91093 0.94002 1.17242 1.23376 0.93048 0.92045 0.97864 1.50461 1.05466 1.08837 1.49612 1.21606 1.02058 0.73070 0.99937 1.22547 1.03219 0.95527 0.98354 1.23153 0.98803 1.03074 0.96257 1.22999 1.00817 0.93848 1.02523 1.81992 1.09683 0.90098 1.22446 1.74674 1.07043 1.16122 1.09834 0.93474 0.78255 0.96036 0.96040 0.91144 0.91141 0.91064 0.91050 0.75546 0.77873 0.87805 0.87545 0.86094 0.88272 0.88239 0.87975 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.07 5.60 -59.91 -0.34 -19.40 16 10 C 0.16 3.20 6.26 -4.04 -0.03 3.17 16 11 C -0.14 -2.23 5.44 -26.73 -0.15 -2.37 16 12 C 0.12 1.75 5.67 -4.04 -0.02 1.72 16 13 N -0.71 -9.42 5.55 -61.35 -0.34 -9.76 16 14 C 0.60 8.29 7.82 -12.48 -0.10 8.19 16 15 O -0.54 -8.70 16.86 5.27 0.09 -8.61 16 16 C -0.10 -1.18 6.99 -83.55 -0.58 -1.76 16 17 C 0.09 0.80 11.27 -16.84 -0.19 0.61 16 18 N -0.36 -2.84 3.69 -61.06 -0.23 -3.07 16 19 C 0.15 0.60 6.82 -4.04 -0.03 0.57 16 20 C -0.18 -0.79 5.93 -90.62 -0.54 -1.33 16 21 C -0.18 -0.62 10.18 -26.73 -0.27 -0.89 16 22 C -0.16 -0.48 10.25 -26.73 -0.27 -0.75 16 23 N -0.06 -0.70 13.48 60.35 0.81 0.11 16 24 N -0.20 -2.57 12.04 32.85 0.40 -2.18 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.41 5.00 8.16 -40.82 -0.33 4.67 16 34 H 0.20 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.11 0.13 7.82 -51.93 -0.41 -0.27 16 37 H 0.12 0.79 7.94 -51.93 -0.41 0.38 16 38 H 0.10 0.25 8.03 -51.93 -0.42 -0.17 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -35.13 358.52 -7.00 -42.13 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.08 Total: 6.07 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.42 Total: -0.43 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: 1.03 Total: -62.32 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.13 -7.00 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169530953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.831 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds