Wall clock time and date at job start Tue Mar 31 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48501 * 109.46912 * 240.00039 * 3 2 1 5 5 H 1.48496 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46815 * 120.00215 * 3 2 1 7 7 C 1.38811 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00203 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47251 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46924 * 179.97438 * 11 10 9 13 13 N 1.46504 * 109.46681 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99854 * 179.97438 * 13 12 11 15 15 O 1.21603 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.47523 * 120.00283 * 180.27861 * 14 13 12 17 17 C 1.36594 * 125.77562 * 179.73080 * 16 14 13 18 18 N 1.34812 * 106.84324 * 179.97438 * 17 16 14 19 19 C 1.46496 * 126.59720 * 179.97438 * 18 17 16 20 20 C 1.53004 * 109.46815 * 124.99861 * 19 18 17 21 21 C 1.52997 * 117.49611 * 243.62327 * 20 19 18 22 22 C 1.53000 * 117.49422 * 175.00042 * 20 19 18 23 23 N 1.40210 * 106.80939 * 359.97438 * 18 17 16 24 24 N 1.28767 * 108.36771 * 359.72209 * 23 18 17 25 25 H 0.96998 * 120.00171 * 359.97438 * 1 2 3 26 26 H 0.97003 * 119.99447 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47276 * 60.00244 * 10 9 7 28 28 H 1.08997 * 109.47264 * 300.00191 * 10 9 7 29 29 H 1.09000 * 109.46573 * 60.00570 * 11 10 9 30 30 H 1.08997 * 109.47029 * 300.00196 * 11 10 9 31 31 H 1.08998 * 109.47328 * 60.00273 * 12 11 10 32 32 H 1.08997 * 109.47540 * 300.00020 * 12 11 10 33 33 H 0.96990 * 120.00418 * 0.02562 * 13 12 11 34 34 H 1.08005 * 126.57383 * 359.97438 * 17 16 14 35 35 H 1.08996 * 109.47232 * 245.00366 * 19 18 17 36 36 H 1.08998 * 109.46946 * 5.00392 * 19 18 17 37 37 H 1.08995 * 115.54951 * 29.33850 * 20 19 18 38 38 H 1.08994 * 117.50234 * 0.02562 * 21 20 19 39 39 H 1.09007 * 117.49599 * 145.02633 * 21 20 19 40 40 H 1.09002 * 117.49584 * 214.97991 * 22 20 19 41 41 H 1.09001 * 117.50486 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8198 -0.0012 12 6 1.8289 -6.1447 -0.0018 13 7 0.8768 -7.2582 -0.0018 14 6 1.3261 -8.5289 -0.0029 15 8 2.5217 -8.7511 -0.0033 16 6 0.3675 -9.6503 -0.0091 17 6 0.6911 -10.9773 -0.0160 18 7 -0.4700 -11.6624 -0.0194 19 6 -0.6245 -13.1192 -0.0274 20 6 -1.5007 -13.5455 1.1523 21 6 -0.8599 -14.4278 2.2255 22 6 -1.8791 -15.0246 1.2528 23 7 -1.5013 -10.7125 -0.0138 24 7 -0.9718 -9.5388 -0.0015 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6847 -3.7145 0.8894 28 1 2.6847 -3.7145 -0.8905 29 1 0.4376 -4.7618 -0.8915 30 1 0.4368 -4.7622 0.8885 31 1 2.4555 -6.2029 0.8881 32 1 2.4556 -6.2020 -0.8918 33 1 -0.0767 -7.0811 -0.0018 34 1 1.6862 -11.3971 -0.0182 35 1 -1.0950 -13.4295 -0.9603 36 1 0.3552 -13.5889 0.0593 37 1 -2.2401 -12.8137 1.4773 38 1 0.1858 -14.7042 2.0915 39 1 -1.1777 -14.2764 3.2572 40 1 -2.8673 -15.2657 1.6445 41 1 -1.5036 -15.6940 0.4788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169530953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:23 Heat of formation + Delta-G solvation = 65.044974 kcal Electronic energy + Delta-G solvation = -21639.266940 eV Core-core repulsion = 18170.372470 eV Total energy + Delta-G solvation = -3468.894470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.25519 -40.47178 -38.63447 -37.49825 -35.93452 -35.11991 -33.73242 -32.18971 -31.12925 -28.94622 -27.06448 -25.07853 -23.97347 -23.37218 -23.26231 -22.54898 -22.09376 -21.00517 -19.38998 -18.92460 -17.47346 -17.27278 -17.22605 -16.69438 -16.54190 -16.10161 -15.62605 -15.47018 -15.30490 -15.22691 -15.03880 -14.58430 -14.38948 -13.80747 -13.34289 -13.28189 -12.84039 -12.77031 -12.60982 -12.43049 -12.42133 -12.25886 -12.08759 -12.04500 -11.78717 -11.64184 -11.35051 -11.23554 -10.97953 -10.91960 -10.43934 -10.05955 -9.00373 -7.94677 -5.24231 0.13692 0.58915 1.06221 1.48529 1.52201 1.58312 2.08944 2.21272 2.57809 2.78056 3.16336 3.25115 3.38896 3.71714 3.77371 3.84971 3.91393 3.96111 4.04299 4.10290 4.14565 4.30552 4.42985 4.45435 4.55497 4.71586 4.75773 4.77888 4.78713 4.90170 4.99191 5.12907 5.22459 5.27707 5.33502 5.38117 5.45660 5.50119 6.27386 6.38856 6.87869 7.09519 7.33704 8.09164 8.32510 9.28722 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.047014 B = 0.001916 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.426782 B =14612.038096 C =14946.564642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.077 0.923 9 N -0.748 5.748 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.134 3.866 13 N -0.708 5.708 14 C 0.604 3.396 15 O -0.568 6.568 16 C -0.126 4.126 17 C 0.114 3.886 18 N -0.345 5.345 19 C 0.146 3.854 20 C -0.191 4.191 21 C -0.177 4.177 22 C -0.153 4.153 23 N -0.087 5.087 24 N -0.227 5.227 25 H 0.252 0.748 26 H 0.375 0.625 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.414 0.586 34 H 0.240 0.760 35 H 0.119 0.881 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -36.109 0.910 36.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.095 0.905 9 N -0.391 5.391 10 C 0.026 3.974 11 C -0.159 4.159 12 C 0.011 3.989 13 N -0.359 5.359 14 C 0.389 3.611 15 O -0.447 6.447 16 C -0.266 4.266 17 C -0.044 4.044 18 N -0.129 5.129 19 C 0.028 3.972 20 C -0.211 4.211 21 C -0.214 4.214 22 C -0.190 4.190 23 N -0.067 5.067 24 N -0.101 5.101 25 H 0.061 0.939 26 H 0.206 0.794 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.250 0.750 34 H 0.256 0.744 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.464 -35.987 0.909 36.028 hybrid contribution 0.261 1.159 0.110 1.193 sum -1.203 -34.828 1.019 34.864 Atomic orbital electron populations 1.69813 1.06653 1.26240 1.59320 1.25622 0.96471 1.01274 1.03521 0.85160 0.77169 0.78860 0.78252 1.20296 1.22055 1.20300 1.19648 0.91648 0.85392 1.41592 0.90502 1.42557 1.05718 1.01235 1.89581 1.20679 0.93950 0.84497 0.98240 1.21722 0.98620 0.92532 1.03065 1.21197 0.91355 0.83693 1.02694 1.45808 1.11592 1.04995 1.73476 1.16941 0.86347 0.82045 0.75741 1.90788 1.16145 1.85072 1.52722 1.21442 0.90741 0.94711 1.19744 1.23874 0.94334 0.90927 0.95304 1.50735 1.04569 1.09948 1.47657 1.22082 1.04188 0.70666 1.00304 1.22438 1.03427 0.95918 0.99276 1.23240 0.99858 1.02625 0.95694 1.23090 1.00676 0.92759 1.02509 1.81915 1.10971 0.90430 1.23409 1.74643 1.07615 1.17131 1.10676 0.93945 0.79361 0.95671 0.95655 0.91072 0.91096 0.91064 0.91012 0.75001 0.74417 0.86316 0.83911 0.88885 0.86625 0.89182 0.88281 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.98 46.82 29.55 68.60 2.03 48.84 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 9 N -0.75 -39.05 5.60 -343.46 -1.92 -40.98 16 10 C 0.15 6.18 6.26 86.38 0.54 6.72 16 11 C -0.12 -3.84 5.44 30.60 0.17 -3.67 16 12 C 0.13 3.72 5.67 86.38 0.49 4.21 16 13 N -0.71 -18.51 5.55 -466.27 -2.59 -21.10 16 14 C 0.60 16.25 7.82 86.69 0.68 16.93 16 15 O -0.57 -17.66 16.86 -4.04 -0.07 -17.73 16 16 C -0.13 -2.90 6.99 40.82 0.29 -2.61 16 17 C 0.11 1.70 11.27 83.85 0.95 2.65 16 18 N -0.34 -4.83 3.69 -347.10 -1.28 -6.12 16 19 C 0.15 0.74 6.82 86.38 0.59 1.33 16 20 C -0.19 -1.43 5.93 -10.79 -0.06 -1.50 16 21 C -0.18 -0.91 10.18 30.60 0.31 -0.60 16 22 C -0.15 -0.57 10.25 30.60 0.31 -0.26 16 23 N -0.09 -1.94 13.48 37.02 0.50 -1.44 16 24 N -0.23 -5.76 12.04 -49.99 -0.60 -6.36 16 25 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 26 H 0.37 20.62 7.67 -92.71 -0.71 19.91 16 27 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.41 10.09 8.16 -92.72 -0.76 9.34 16 34 H 0.24 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.14 -0.28 7.82 -2.39 -0.02 -0.30 16 37 H 0.09 1.25 7.94 -2.39 -0.02 1.23 16 38 H 0.12 0.21 8.03 -2.39 -0.02 0.19 16 39 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -76.08 358.52 1.49 -74.59 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.41 Total: 24.78 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 5.56 Total: 5.62 kcal Atomic # 7 Polarization: -130.48 SS G_CDS: -5.61 Total: -136.09 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.07 Total: -17.73 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -76.08 1.49 -74.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169530953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.631 kcal (2) G-P(sol) polarization free energy of solvation -76.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds