Wall clock time and date at job start Tue Mar 31 2020 03:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47020 * 111.00127 * 2 1 4 4 C 1.53093 * 109.25606 * 182.39204 * 3 2 1 5 5 O 1.43016 * 109.26495 * 303.15013 * 4 3 2 6 6 C 1.43019 * 113.73447 * 58.66790 * 5 4 3 7 7 C 1.47018 * 111.00066 * 123.63473 * 2 1 3 8 8 H 1.09002 * 109.50811 * 297.54153 * 7 2 1 9 9 C 1.52997 * 109.50196 * 57.62917 * 7 2 1 10 10 N 1.46498 * 109.47334 * 54.36599 * 9 7 2 11 11 C 1.39131 * 120.00090 * 184.48953 * 10 9 7 12 12 C 1.39170 * 119.62783 * 359.97438 * 11 10 9 13 13 C 1.38206 * 119.16456 * 179.97438 * 12 11 10 14 14 C 1.39444 * 118.45456 * 359.97438 * 13 12 11 15 15 O 1.35816 * 120.40762 * 180.02562 * 14 13 12 16 16 C 1.34814 * 116.99775 * 354.63737 * 15 14 13 17 17 H 1.07997 * 119.99778 * 5.12533 * 16 15 14 18 18 C 1.38634 * 119.99856 * 185.13245 * 16 15 14 19 19 N 1.31572 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99860 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47360 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47124 * 119.99742 * 20 18 16 23 23 H 1.48507 * 109.47184 * 239.99636 * 20 18 16 24 24 C 1.38671 * 119.19200 * 0.02562 * 14 13 12 25 25 N 1.31929 * 120.75540 * 359.73843 * 24 14 13 26 26 H 1.09008 * 109.46993 * 290.34483 * 1 2 3 27 27 H 1.08995 * 109.47252 * 170.34302 * 1 2 3 28 28 H 1.09004 * 109.47419 * 50.34259 * 1 2 3 29 29 H 1.08995 * 109.50458 * 302.33174 * 3 2 1 30 30 H 1.08997 * 109.50258 * 62.45886 * 3 2 1 31 31 H 1.09005 * 109.50338 * 183.21936 * 4 3 2 32 32 H 1.08996 * 109.50682 * 63.09091 * 4 3 2 33 33 H 1.08997 * 109.50551 * 181.39693 * 6 5 4 34 34 H 1.09006 * 109.50126 * 61.26888 * 6 5 4 35 35 H 1.09003 * 109.46813 * 174.35783 * 9 7 2 36 36 H 1.08995 * 109.47465 * 294.35928 * 9 7 2 37 37 H 0.97005 * 120.00074 * 4.48092 * 10 9 7 38 38 H 1.07998 * 120.41747 * 359.95857 * 12 11 10 39 39 H 1.08011 * 120.77156 * 180.02562 * 13 12 11 40 40 H 0.97005 * 120.00200 * 180.02562 * 19 18 16 41 41 H 1.07999 * 119.61976 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0176 0.5574 1.0403 6 6 3.5249 -0.7849 1.0709 7 6 1.9959 -0.7602 1.1427 8 1 1.6828 -0.2843 2.0720 9 6 1.4581 -2.1918 1.0955 10 7 1.7654 -2.7862 -0.2078 11 6 1.2924 -4.0563 -0.5221 12 6 0.5284 -4.7554 0.4076 13 6 0.0629 -6.0162 0.0851 14 6 0.3791 -6.5409 -1.1676 15 8 -0.0581 -7.7758 -1.5259 16 6 -0.7020 -8.4942 -0.5841 17 1 -0.9228 -8.0512 0.3757 18 6 -1.0805 -9.8015 -0.8479 19 7 -0.8118 -10.3409 -2.0175 20 14 -1.9721 -10.7970 0.4571 21 1 -2.1532 -9.9670 1.6751 22 1 -3.3006 -11.2134 -0.0596 23 1 -1.1718 -12.0021 0.7931 24 6 1.1453 -5.7863 -2.0431 25 7 1.5693 -4.5839 -1.7042 26 1 -0.3633 0.3573 0.9636 27 1 -0.3633 -1.0130 -0.1724 28 1 -0.3634 0.6559 -0.7912 29 1 1.6133 1.9092 -0.8681 30 1 1.6828 1.8825 0.9110 31 1 3.9222 2.3398 -0.0029 32 1 3.8385 0.8644 -0.9964 33 1 3.9222 -1.2985 1.9464 34 1 3.8385 -1.3084 0.1676 35 1 1.9262 -2.7819 1.8833 36 1 0.3783 -2.1794 1.2436 37 1 2.2986 -2.2941 -0.8517 38 1 0.3022 -4.3184 1.3689 39 1 -0.5325 -6.5816 0.7868 40 1 -1.0770 -11.2555 -2.2023 41 1 1.3939 -6.1858 -3.0152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169651876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:41 Heat of formation + Delta-G solvation = -12.956577 kcal Electronic energy + Delta-G solvation = -23266.970847 eV Core-core repulsion = 19762.401226 eV Total energy + Delta-G solvation = -3504.569622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22921 -39.43232 -37.33391 -36.34454 -34.73269 -32.31910 -31.60890 -31.18031 -29.22008 -27.99954 -26.18373 -25.10596 -24.43101 -23.32720 -22.34920 -21.41581 -19.95902 -18.15385 -17.46539 -16.75064 -16.68165 -16.24548 -15.88337 -15.46897 -15.11912 -14.81531 -14.43000 -14.25923 -14.10466 -13.96203 -13.49677 -13.41998 -13.13045 -12.68744 -12.52589 -12.30221 -12.10951 -12.07480 -11.70686 -11.63775 -11.43602 -11.30046 -11.05940 -10.82366 -10.46691 -9.93527 -9.62148 -9.28744 -8.94018 -8.72067 -8.68534 -8.52211 -6.61273 -6.40534 -3.97635 2.06107 2.45312 3.13708 3.14887 3.20096 3.36200 3.55343 3.73959 3.99755 4.44353 4.53073 4.60469 4.71341 4.83152 4.92445 4.96441 5.12690 5.21730 5.25852 5.29333 5.32188 5.42068 5.45086 5.48736 5.55342 5.57978 5.68182 5.76922 5.78896 5.97356 6.02726 6.53806 6.61802 6.63931 6.76436 6.82589 7.13638 7.21953 7.30052 7.73088 8.01014 8.22718 8.95519 9.05126 9.75334 10.77619 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036338 B = 0.002841 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.361061 B = 9854.479000 C =10022.486726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.531 5.531 3 C 0.018 3.982 4 C 0.061 3.939 5 O -0.386 6.386 6 C 0.068 3.932 7 C 0.039 3.961 8 H 0.062 0.938 9 C 0.147 3.853 10 N -0.728 5.728 11 C 0.313 3.687 12 C -0.188 4.188 13 C -0.155 4.155 14 C 0.063 3.937 15 O -0.179 6.179 16 C -0.389 4.389 17 H 0.088 0.912 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.939 3.061 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.276 1.276 24 C 0.070 3.930 25 N -0.501 5.501 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.402 0.598 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.268 0.732 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 20.864 7.079 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.257 5.257 3 C -0.110 4.110 4 C -0.016 4.016 5 O -0.304 6.304 6 C -0.009 4.009 7 C -0.070 4.070 8 H 0.080 0.920 9 C 0.020 3.980 10 N -0.369 5.369 11 C 0.080 3.920 12 C -0.212 4.212 13 C -0.182 4.182 14 C 0.008 3.992 15 O -0.083 6.083 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.764 3.236 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.089 4.089 25 N -0.217 5.217 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.238 0.762 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.078 0.922 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.069 20.831 6.053 22.277 hybrid contribution -1.443 -0.481 1.686 2.271 sum 3.625 20.351 7.740 22.072 Atomic orbital electron populations 1.22427 0.86414 1.03475 1.00081 1.62149 1.08680 1.12927 1.41903 1.22820 0.96531 0.89998 1.01691 1.22684 0.92180 0.96434 0.90267 1.87991 1.69914 1.24025 1.48464 1.22738 0.91235 0.83691 1.03257 1.22613 0.96696 0.94712 0.93020 0.92039 1.21098 0.99673 0.90608 0.86572 1.43776 1.61123 1.15011 1.16987 1.17924 0.96286 0.87262 0.90489 1.21070 1.03955 0.96277 0.99925 1.21393 1.03238 0.95820 0.97762 1.20241 0.96290 0.88971 0.93729 1.83997 1.64973 1.21295 1.38022 1.21270 1.35323 0.94608 0.95408 0.89461 1.25235 0.97767 0.95930 0.97633 1.70050 1.44210 1.14612 1.21104 0.85680 0.78823 0.79535 0.79545 1.19241 1.20224 1.20200 1.21461 0.98374 0.89361 0.99740 1.66934 1.24683 1.12702 1.17421 0.95609 0.90218 0.91346 0.89511 0.94085 0.88520 0.92014 0.88151 0.91619 0.92156 0.92264 0.76197 0.86825 0.84768 0.92161 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.01 60.06 0.54 0.76 16 2 N -0.53 -5.07 4.27 -234.57 -1.00 -6.08 16 3 C 0.02 0.14 5.65 -3.71 -0.02 0.12 16 4 C 0.06 0.50 7.01 37.21 0.26 0.76 16 5 O -0.39 -4.00 10.83 -35.23 -0.38 -4.38 16 6 C 0.07 0.65 6.20 37.21 0.23 0.88 16 7 C 0.04 0.36 2.23 -67.60 -0.15 0.21 16 8 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 9 C 0.15 1.60 3.92 -4.04 -0.02 1.58 16 10 N -0.73 -10.25 5.29 -60.38 -0.32 -10.57 16 11 C 0.31 5.69 7.65 -154.89 -1.19 4.50 16 12 C -0.19 -3.43 9.30 -39.25 -0.37 -3.80 16 13 C -0.15 -3.32 9.25 -39.14 -0.36 -3.68 16 14 C 0.06 1.52 6.67 -38.97 -0.26 1.26 16 15 O -0.18 -5.08 9.77 -0.11 0.00 -5.08 16 16 C -0.39 -10.80 9.50 30.88 0.29 -10.50 16 17 H 0.09 2.23 5.25 -52.49 -0.28 1.96 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 19 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 20 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 24 C 0.07 1.54 11.14 -17.35 -0.19 1.34 16 25 N -0.50 -10.22 10.39 -12.25 -0.13 -10.35 16 26 H 0.03 0.21 8.12 -51.92 -0.42 -0.21 16 27 H 0.08 0.87 6.75 -51.93 -0.35 0.52 16 28 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 29 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.69 7.06 -51.93 -0.37 0.32 16 35 H 0.06 0.63 8.10 -51.93 -0.42 0.20 16 36 H 0.06 0.65 6.38 -51.93 -0.33 0.32 16 37 H 0.40 5.68 7.39 -40.82 -0.30 5.38 16 38 H 0.11 1.73 6.69 -52.49 -0.35 1.38 16 39 H 0.13 2.82 5.75 -52.48 -0.30 2.52 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.15 3.12 8.06 -52.49 -0.42 2.69 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -31.33 332.83 -8.03 -39.37 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.63 Total: 6.82 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -1.32 Total: -5.61 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.69 Total: -51.57 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.38 Total: -9.46 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.33 -8.03 -39.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169651876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.408 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds