Wall clock time and date at job start Tue Mar 31 2020 03:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47020 * 111.00127 * 2 1 4 4 C 1.53093 * 109.25606 * 182.39204 * 3 2 1 5 5 O 1.43016 * 109.26495 * 303.15013 * 4 3 2 6 6 C 1.43019 * 113.73447 * 58.66790 * 5 4 3 7 7 C 1.47018 * 111.00066 * 123.63473 * 2 1 3 8 8 H 1.09002 * 109.50811 * 297.54153 * 7 2 1 9 9 C 1.52997 * 109.50196 * 57.62917 * 7 2 1 10 10 N 1.46498 * 109.47334 * 54.36599 * 9 7 2 11 11 C 1.39131 * 120.00090 * 184.48953 * 10 9 7 12 12 C 1.39170 * 119.62783 * 359.97438 * 11 10 9 13 13 C 1.38206 * 119.16456 * 179.97438 * 12 11 10 14 14 C 1.39444 * 118.45456 * 359.97438 * 13 12 11 15 15 O 1.35816 * 120.40762 * 180.02562 * 14 13 12 16 16 C 1.34814 * 116.99775 * 354.63737 * 15 14 13 17 17 H 1.07997 * 119.99778 * 5.12533 * 16 15 14 18 18 C 1.38634 * 119.99856 * 185.13245 * 16 15 14 19 19 N 1.31572 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99860 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47360 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47124 * 119.99742 * 20 18 16 23 23 H 1.48507 * 109.47184 * 239.99636 * 20 18 16 24 24 C 1.38671 * 119.19200 * 0.02562 * 14 13 12 25 25 N 1.31929 * 120.75540 * 359.73843 * 24 14 13 26 26 H 1.09008 * 109.46993 * 290.34483 * 1 2 3 27 27 H 1.08995 * 109.47252 * 170.34302 * 1 2 3 28 28 H 1.09004 * 109.47419 * 50.34259 * 1 2 3 29 29 H 1.08995 * 109.50458 * 302.33174 * 3 2 1 30 30 H 1.08997 * 109.50258 * 62.45886 * 3 2 1 31 31 H 1.09005 * 109.50338 * 183.21936 * 4 3 2 32 32 H 1.08996 * 109.50682 * 63.09091 * 4 3 2 33 33 H 1.08997 * 109.50551 * 181.39693 * 6 5 4 34 34 H 1.09006 * 109.50126 * 61.26888 * 6 5 4 35 35 H 1.09003 * 109.46813 * 174.35783 * 9 7 2 36 36 H 1.08995 * 109.47465 * 294.35928 * 9 7 2 37 37 H 0.97005 * 120.00074 * 4.48092 * 10 9 7 38 38 H 1.07998 * 120.41747 * 359.95857 * 12 11 10 39 39 H 1.08011 * 120.77156 * 180.02562 * 13 12 11 40 40 H 0.97005 * 120.00200 * 180.02562 * 19 18 16 41 41 H 1.07999 * 119.61976 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 -0.0603 5 8 4.0176 0.5574 1.0403 6 6 3.5249 -0.7849 1.0709 7 6 1.9959 -0.7602 1.1427 8 1 1.6828 -0.2843 2.0720 9 6 1.4581 -2.1918 1.0955 10 7 1.7654 -2.7862 -0.2078 11 6 1.2924 -4.0563 -0.5221 12 6 0.5284 -4.7554 0.4076 13 6 0.0629 -6.0162 0.0851 14 6 0.3791 -6.5409 -1.1676 15 8 -0.0581 -7.7758 -1.5259 16 6 -0.7020 -8.4942 -0.5841 17 1 -0.9228 -8.0512 0.3757 18 6 -1.0805 -9.8015 -0.8479 19 7 -0.8118 -10.3409 -2.0175 20 14 -1.9721 -10.7970 0.4571 21 1 -2.1532 -9.9670 1.6751 22 1 -3.3006 -11.2134 -0.0596 23 1 -1.1718 -12.0021 0.7931 24 6 1.1453 -5.7863 -2.0431 25 7 1.5693 -4.5839 -1.7042 26 1 -0.3633 0.3573 0.9636 27 1 -0.3633 -1.0130 -0.1724 28 1 -0.3634 0.6559 -0.7912 29 1 1.6133 1.9092 -0.8681 30 1 1.6828 1.8825 0.9110 31 1 3.9222 2.3398 -0.0029 32 1 3.8385 0.8644 -0.9964 33 1 3.9222 -1.2985 1.9464 34 1 3.8385 -1.3084 0.1676 35 1 1.9262 -2.7819 1.8833 36 1 0.3783 -2.1794 1.2436 37 1 2.2986 -2.2941 -0.8517 38 1 0.3022 -4.3184 1.3689 39 1 -0.5325 -6.5816 0.7868 40 1 -1.0770 -11.2555 -2.2023 41 1 1.3939 -6.1858 -3.0152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169651876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:41 Heat of formation + Delta-G solvation = -36.062563 kcal Electronic energy + Delta-G solvation = -23267.972798 eV Core-core repulsion = 19762.401226 eV Total energy + Delta-G solvation = -3505.571573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32955 -40.75806 -39.01695 -37.29029 -35.82416 -34.23429 -32.86772 -32.60775 -30.06689 -29.33452 -27.45727 -26.79389 -25.14230 -24.63667 -23.55640 -22.85632 -20.80633 -19.98876 -19.11117 -17.86755 -17.66366 -17.46046 -17.06107 -16.33097 -16.18676 -15.99581 -15.79510 -15.73967 -15.48421 -14.93312 -14.83589 -14.72429 -14.59017 -14.01317 -13.71822 -13.51993 -13.32518 -13.24108 -13.09345 -12.83880 -12.73911 -12.38975 -12.08657 -12.01810 -11.55345 -11.52257 -11.01175 -10.69190 -10.51606 -10.34048 -10.24553 -9.39610 -8.41014 -8.19165 -6.05529 0.40546 0.78161 1.38501 1.46850 1.56325 2.19797 2.34560 2.78538 2.89920 2.92807 3.24330 3.57269 3.69584 3.75469 3.88216 3.95965 4.09408 4.16183 4.27286 4.28412 4.38097 4.40620 4.53803 4.59425 4.60238 4.68964 4.72204 4.78889 4.88160 4.93204 4.99540 5.00475 5.05569 5.31348 5.53873 5.58292 5.90836 5.95646 6.03485 6.13588 6.33898 6.82759 7.03492 7.39456 7.85631 8.82725 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036338 B = 0.002841 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.361061 B = 9854.479000 C =10022.486726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.021 3.979 4 C 0.058 3.942 5 O -0.400 6.400 6 C 0.067 3.933 7 C 0.047 3.953 8 H 0.074 0.926 9 C 0.141 3.859 10 N -0.713 5.713 11 C 0.332 3.668 12 C -0.181 4.181 13 C -0.149 4.149 14 C 0.022 3.978 15 O -0.230 6.230 16 C -0.408 4.408 17 H 0.101 0.899 18 C -0.025 4.025 19 N -0.923 5.923 20 Si 1.017 2.983 21 H -0.249 1.249 22 H -0.271 1.271 23 H -0.271 1.271 24 C 0.066 3.934 25 N -0.516 5.516 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.045 0.955 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.404 0.596 38 H 0.154 0.846 39 H 0.137 0.863 40 H 0.271 0.729 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.276 23.315 9.677 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.107 4.107 4 C -0.019 4.019 5 O -0.319 6.319 6 C -0.010 4.010 7 C -0.062 4.062 8 H 0.091 0.909 9 C 0.016 3.984 10 N -0.351 5.351 11 C 0.096 3.904 12 C -0.206 4.206 13 C -0.176 4.176 14 C -0.031 4.031 15 O -0.136 6.136 16 C -0.484 4.484 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.562 5.562 20 Si 0.837 3.163 21 H -0.172 1.172 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.091 4.091 25 N -0.234 5.234 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.241 0.759 38 H 0.172 0.828 39 H 0.154 0.846 40 H 0.080 0.920 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.969 23.372 8.671 25.419 hybrid contribution -1.243 -0.819 0.918 1.749 sum 3.726 22.554 9.589 24.789 Atomic orbital electron populations 1.22367 0.86235 1.02519 1.00942 1.62151 1.08945 1.14022 1.42099 1.22836 0.96237 0.89200 1.02409 1.22844 0.92446 0.97152 0.89459 1.87977 1.70360 1.24299 1.49260 1.22763 0.91404 0.83612 1.03183 1.22520 0.96408 0.93690 0.93581 0.90851 1.21378 1.00454 0.91647 0.84907 1.43968 1.59641 1.13230 1.18287 1.18331 0.94319 0.88192 0.89523 1.21372 1.02842 0.94914 1.01444 1.21562 1.02552 0.96863 0.96603 1.20595 0.98341 0.88511 0.95676 1.83961 1.67181 1.23239 1.39266 1.21800 1.35389 0.95243 0.96004 0.88133 1.26532 0.98635 0.96921 1.00139 1.70202 1.46899 1.15265 1.23827 0.84543 0.77280 0.77649 0.76826 1.17236 1.19625 1.19643 1.21506 0.98101 0.89837 0.99681 1.67027 1.25509 1.12119 1.18717 0.94558 0.92027 0.90723 0.88351 0.93721 0.86554 0.92561 0.87091 0.92851 0.90565 0.91466 0.75932 0.82821 0.84552 0.92018 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.01 127.69 1.15 1.57 16 2 N -0.55 -8.87 4.27 -896.05 -3.83 -12.70 16 3 C 0.02 0.27 5.65 86.31 0.49 0.76 16 4 C 0.06 0.79 7.01 72.01 0.50 1.30 16 5 O -0.40 -7.32 10.83 -148.98 -1.61 -8.93 16 6 C 0.07 1.12 6.20 72.01 0.45 1.56 16 7 C 0.05 0.73 2.23 44.92 0.10 0.83 16 8 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 9 C 0.14 2.53 3.92 86.38 0.34 2.87 16 10 N -0.71 -18.02 5.29 -344.95 -1.83 -19.85 16 11 C 0.33 11.36 7.65 133.03 1.02 12.38 16 12 C -0.18 -6.15 9.30 22.49 0.21 -5.94 16 13 C -0.15 -6.27 9.25 22.55 0.21 -6.06 16 14 C 0.02 1.08 6.67 22.66 0.15 1.23 16 15 O -0.23 -13.69 9.77 -23.32 -0.23 -13.92 16 16 C -0.41 -23.33 9.50 67.91 0.64 -22.69 16 17 H 0.10 5.20 5.25 -2.91 -0.02 5.19 16 18 C -0.03 -1.43 5.49 84.83 0.47 -0.96 16 19 N -0.92 -56.59 13.67 21.61 0.30 -56.29 16 20 Si 1.02 42.39 29.55 68.60 2.03 44.41 16 21 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 C 0.07 2.98 11.14 84.78 0.94 3.93 16 25 N -0.52 -20.75 10.39 -192.66 -2.00 -22.75 16 26 H 0.04 0.48 8.12 -2.38 -0.02 0.47 16 27 H 0.06 1.18 6.75 -2.39 -0.02 1.16 16 28 H 0.07 1.05 8.04 -2.38 -0.02 1.04 16 29 H 0.10 1.06 8.09 -2.39 -0.02 1.04 16 30 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.01 7.06 -2.38 -0.02 0.99 16 35 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 36 H 0.07 1.19 6.38 -2.39 -0.02 1.17 16 37 H 0.40 10.44 7.39 -92.70 -0.69 9.75 16 38 H 0.15 3.97 6.69 -2.91 -0.02 3.95 16 39 H 0.14 5.62 5.75 -2.90 -0.02 5.61 16 40 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 41 H 0.15 6.53 8.06 -2.91 -0.02 6.51 16 Total: -1.00 -70.74 332.83 -0.14 -70.88 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.37 Total: 28.36 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 6.67 Total: -9.22 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -7.36 Total: -111.59 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -1.84 Total: -22.85 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -70.74 -0.14 -70.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169651876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.816 kcal (2) G-P(sol) polarization free energy of solvation -70.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds