Wall clock time and date at job start Tue Mar 31 2020 03:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35616 * 116.99903 * 2 1 4 4 C 1.39156 * 120.50533 * 0.02562 * 3 2 1 5 5 C 1.38304 * 118.62974 * 180.02562 * 4 3 2 6 6 C 1.39945 * 119.59624 * 0.02562 * 5 4 3 7 7 N 1.38907 * 119.49561 * 179.72200 * 6 5 4 8 8 C 1.46498 * 120.00095 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47356 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.50562 * 65.08274 * 9 8 7 11 11 C 1.53096 * 109.51033 * 185.21675 * 9 8 7 12 12 O 1.43012 * 109.26177 * 176.78056 * 11 9 8 13 13 C 1.43014 * 113.73890 * 301.33312 * 12 11 9 14 14 C 1.53097 * 109.25981 * 58.66636 * 13 12 11 15 15 N 1.47015 * 109.26062 * 303.15091 * 14 13 12 16 16 N 1.31860 * 121.00709 * 359.97438 * 6 5 4 17 17 C 1.33828 * 121.47403 * 0.02562 * 16 6 5 18 18 C 1.40914 * 119.84706 * 179.97438 * 17 16 6 19 19 H 1.08000 * 119.99519 * 180.02562 * 18 17 16 20 20 C 1.40020 * 120.00533 * 359.97438 * 18 17 16 21 21 N 1.30791 * 119.99884 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00316 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47154 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47435 * 120.00118 * 22 20 18 25 25 H 1.48496 * 109.47370 * 239.99971 * 22 20 18 26 26 H 1.09005 * 109.47253 * 59.99611 * 1 2 3 27 27 H 1.09001 * 109.46755 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46818 * 299.99465 * 1 2 3 29 29 H 1.07999 * 120.68429 * 0.04189 * 4 3 2 30 30 H 1.07998 * 120.20475 * 180.02562 * 5 4 3 31 31 H 0.97006 * 119.99951 * 179.97438 * 7 6 5 32 32 H 1.09006 * 109.47021 * 300.00188 * 8 7 6 33 33 H 1.08994 * 109.47195 * 59.99943 * 8 7 6 34 34 H 1.09001 * 109.50477 * 296.72096 * 11 9 8 35 35 H 1.08999 * 109.50272 * 56.84237 * 11 9 8 36 36 H 1.09005 * 109.50415 * 298.73373 * 13 12 11 37 37 H 1.08997 * 109.54731 * 178.62474 * 13 12 11 38 38 H 1.09006 * 109.50861 * 183.21781 * 14 13 12 39 39 H 1.08998 * 109.51004 * 63.08836 * 14 13 12 40 40 H 1.00902 * 110.99881 * 294.84266 * 15 14 13 41 41 H 0.96993 * 119.99684 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0005 5 6 1.9650 3.5931 0.0000 6 6 3.3643 3.6108 -0.0017 7 7 4.0329 4.8283 -0.0081 8 6 3.2735 6.0811 -0.0125 9 6 4.2426 7.2650 -0.0199 10 1 4.8063 7.2681 -0.9528 11 6 3.4546 8.5715 0.1067 12 8 4.3689 9.6691 0.1748 13 6 5.2872 9.5865 1.2681 14 6 6.0937 8.2903 1.1533 15 7 5.1707 7.1467 1.1141 16 7 4.0577 2.4892 -0.0022 17 6 3.4544 1.2947 -0.0017 18 6 4.2292 0.1177 -0.0028 19 1 3.7448 -0.8476 -0.0028 20 6 5.6270 0.1995 -0.0049 21 7 6.2136 1.3685 -0.0054 22 14 6.6540 -1.3608 -0.0057 23 1 5.7567 -2.5441 -0.0043 24 1 7.5091 -1.3901 -1.2195 25 1 7.5127 -1.3888 1.2054 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2176 2.3479 0.0016 30 1 1.4100 4.5196 0.0008 31 1 5.0028 4.8491 -0.0089 32 1 2.6443 6.1214 -0.9018 33 1 2.6471 6.1294 0.8781 34 1 2.8063 8.6911 -0.7614 35 1 2.8494 8.5451 1.0128 36 1 4.7352 9.5897 2.2080 37 1 5.9644 10.4401 1.2408 38 1 6.7546 8.1952 2.0149 39 1 6.6871 8.3105 0.2392 40 1 4.6684 7.0574 1.9847 41 1 7.1819 1.4251 -0.0073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170042691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:31 Heat of formation + Delta-G solvation = -31.644559 kcal Electronic energy + Delta-G solvation = -23484.169479 eV Core-core repulsion = 19978.789485 eV Total energy + Delta-G solvation = -3505.379994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.82857 -38.71373 -36.93538 -35.52574 -34.04416 -33.10368 -31.47772 -30.21740 -28.68793 -26.80847 -26.32885 -25.37238 -24.60320 -22.66564 -21.50085 -20.86901 -20.22647 -17.39007 -16.81063 -16.48101 -16.23758 -16.06950 -15.54513 -15.40109 -14.98457 -14.74635 -14.56057 -14.47851 -13.75476 -13.39868 -13.04439 -12.69858 -12.55972 -12.38528 -12.23619 -11.93756 -11.55195 -11.42287 -11.28018 -11.16202 -11.13535 -10.97078 -10.48071 -10.38729 -10.36154 -10.34138 -9.71979 -9.40018 -8.37575 -8.30919 -7.92987 -7.58129 -6.30272 -6.17659 -4.29100 2.87820 3.17164 3.19775 3.23202 3.33261 3.57914 3.92721 4.04964 4.23073 4.63421 4.73499 4.81906 4.87851 4.89456 4.99164 5.08276 5.21400 5.40384 5.51369 5.53475 5.75907 5.84443 5.84861 5.90667 6.00987 6.02595 6.14207 6.14866 6.45376 6.75065 6.80400 6.85887 6.90572 7.22466 7.27901 7.38837 7.57636 7.76578 8.31555 8.36165 8.53731 8.82254 8.89804 9.26594 10.26890 10.43092 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.004176 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.861707 B = 6702.751103 C = 8334.016791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.312 6.312 3 C -0.079 4.079 4 C -0.114 4.114 5 C -0.351 4.351 6 C 0.395 3.605 7 N -0.727 5.727 8 C 0.153 3.847 9 C 0.043 3.957 10 H 0.096 0.904 11 C 0.030 3.970 12 O -0.381 6.381 13 C 0.019 3.981 14 C 0.023 3.977 15 N -0.670 5.670 16 N -0.512 5.512 17 C 0.290 3.710 18 C -0.413 4.413 19 H 0.091 0.909 20 C 0.067 3.933 21 N -0.711 5.711 22 Si 0.906 3.094 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.274 1.274 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.404 0.596 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.343 0.657 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.451 11.523 1.963 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.127 4.127 4 C -0.138 4.138 5 C -0.377 4.377 6 C 0.157 3.843 7 N -0.365 5.365 8 C 0.026 3.974 9 C -0.068 4.068 10 H 0.114 0.886 11 C -0.049 4.049 12 O -0.299 6.299 13 C -0.059 4.059 14 C -0.107 4.107 15 N -0.300 5.300 16 N -0.235 5.235 17 C 0.161 3.839 18 C -0.446 4.446 19 H 0.109 0.891 20 C -0.158 4.158 21 N -0.333 5.333 22 Si 0.730 3.270 23 H -0.183 1.183 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.241 0.759 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.162 0.838 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.984 11.305 1.494 11.446 hybrid contribution -1.096 0.198 0.554 1.244 sum -2.080 11.503 2.048 11.868 Atomic orbital electron populations 1.22673 0.82317 1.01421 0.99585 1.85919 1.17734 1.27971 1.90953 1.20034 0.93455 0.83056 1.16127 1.20652 0.97158 0.92431 1.03584 1.20334 0.92907 0.96183 1.28310 1.18500 0.87614 0.86827 0.91353 1.43868 1.08304 1.00588 1.83778 1.20915 0.92872 0.83118 1.00535 1.22474 0.94140 0.93850 0.96294 0.88607 1.23228 0.91706 0.87182 1.02792 1.88055 1.47605 1.44375 1.49864 1.23326 0.92802 1.00197 0.89615 1.22669 0.95889 0.88212 1.03954 1.60743 1.21572 1.41320 1.06402 1.68393 1.34668 0.94916 1.25514 1.17785 0.84968 0.91108 0.90031 1.19564 0.90528 0.93140 1.41333 0.89138 1.26079 0.98768 0.97063 0.93854 1.70188 1.10101 1.24337 1.28669 0.86292 0.79835 0.82472 0.78355 1.18326 1.19988 1.19982 0.94561 0.90252 0.94569 0.88437 0.89241 0.75943 0.92499 0.93404 0.88003 0.92846 0.93260 0.88503 0.89535 0.89857 0.83811 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.83 101.05 0.99 1.64 16 2 O -0.31 -7.45 9.61 -18.55 -0.18 -7.62 16 3 C -0.08 -2.05 6.74 -38.10 -0.26 -2.31 16 4 C -0.11 -2.67 9.12 -39.22 -0.36 -3.03 16 5 C -0.35 -8.12 9.33 -38.92 -0.36 -8.48 16 6 C 0.40 9.68 7.65 -155.26 -1.19 8.49 16 7 N -0.73 -14.54 5.56 -60.35 -0.34 -14.88 16 8 C 0.15 2.29 4.50 -4.04 -0.02 2.27 16 9 C 0.04 0.53 2.79 -67.60 -0.19 0.34 16 10 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 11 C 0.03 0.32 6.29 37.21 0.23 0.55 16 12 O -0.38 -4.47 10.83 -35.23 -0.38 -4.85 16 13 C 0.02 0.18 7.01 37.21 0.26 0.44 16 14 C 0.02 0.23 6.76 -3.71 -0.03 0.20 16 15 N -0.67 -8.28 6.03 -106.45 -0.64 -8.93 16 16 N -0.51 -14.26 7.88 -10.20 -0.08 -14.34 16 17 C 0.29 8.23 6.56 -84.85 -0.56 7.67 16 18 C -0.41 -11.53 8.94 -37.90 -0.34 -11.87 16 19 H 0.09 2.46 7.31 -52.49 -0.38 2.08 16 20 C 0.07 1.76 5.50 -17.33 -0.10 1.66 16 21 N -0.71 -19.09 11.45 55.55 0.64 -18.46 16 22 Si 0.91 19.17 29.56 -169.99 -5.02 14.15 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.10 1.99 6.43 -52.49 -0.34 1.65 16 30 H 0.09 1.82 6.67 -52.49 -0.35 1.47 16 31 H 0.40 8.44 8.26 -40.82 -0.34 8.11 16 32 H 0.06 0.84 7.92 -51.93 -0.41 0.43 16 33 H 0.05 0.71 7.91 -51.93 -0.41 0.30 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.34 4.10 8.79 -39.29 -0.35 3.75 16 41 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -31.38 335.34 -8.74 -40.12 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -5.89 Total: 12.17 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.90 Total: -2.41 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.42 Total: -56.60 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.56 Total: -12.48 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.38 -8.74 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170042691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.473 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds