Wall clock time and date at job start Tue Mar 31 2020 03:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35616 * 116.99903 * 2 1 4 4 C 1.39156 * 120.50533 * 0.02562 * 3 2 1 5 5 C 1.38304 * 118.62974 * 180.02562 * 4 3 2 6 6 C 1.39945 * 119.59624 * 0.02562 * 5 4 3 7 7 N 1.38907 * 119.49561 * 179.72200 * 6 5 4 8 8 C 1.46498 * 120.00095 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47356 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.50562 * 65.08274 * 9 8 7 11 11 C 1.53096 * 109.51033 * 185.21675 * 9 8 7 12 12 O 1.43012 * 109.26177 * 176.78056 * 11 9 8 13 13 C 1.43014 * 113.73890 * 301.33312 * 12 11 9 14 14 C 1.53097 * 109.25981 * 58.66636 * 13 12 11 15 15 N 1.47015 * 109.26062 * 303.15091 * 14 13 12 16 16 N 1.31860 * 121.00709 * 359.97438 * 6 5 4 17 17 C 1.33828 * 121.47403 * 0.02562 * 16 6 5 18 18 C 1.40914 * 119.84706 * 179.97438 * 17 16 6 19 19 H 1.08000 * 119.99519 * 180.02562 * 18 17 16 20 20 C 1.40020 * 120.00533 * 359.97438 * 18 17 16 21 21 N 1.30791 * 119.99884 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00316 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47154 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47435 * 120.00118 * 22 20 18 25 25 H 1.48496 * 109.47370 * 239.99971 * 22 20 18 26 26 H 1.09005 * 109.47253 * 59.99611 * 1 2 3 27 27 H 1.09001 * 109.46755 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46818 * 299.99465 * 1 2 3 29 29 H 1.07999 * 120.68429 * 0.04189 * 4 3 2 30 30 H 1.07998 * 120.20475 * 180.02562 * 5 4 3 31 31 H 0.97006 * 119.99951 * 179.97438 * 7 6 5 32 32 H 1.09006 * 109.47021 * 300.00188 * 8 7 6 33 33 H 1.08994 * 109.47195 * 59.99943 * 8 7 6 34 34 H 1.09001 * 109.50477 * 296.72096 * 11 9 8 35 35 H 1.08999 * 109.50272 * 56.84237 * 11 9 8 36 36 H 1.09005 * 109.50415 * 298.73373 * 13 12 11 37 37 H 1.08997 * 109.54731 * 178.62474 * 13 12 11 38 38 H 1.09006 * 109.50861 * 183.21781 * 14 13 12 39 39 H 1.08998 * 109.51004 * 63.08836 * 14 13 12 40 40 H 1.00902 * 110.99881 * 294.84266 * 15 14 13 41 41 H 0.96993 * 119.99684 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0005 5 6 1.9650 3.5931 0.0000 6 6 3.3643 3.6108 -0.0017 7 7 4.0329 4.8283 -0.0081 8 6 3.2735 6.0811 -0.0125 9 6 4.2426 7.2650 -0.0199 10 1 4.8063 7.2681 -0.9528 11 6 3.4546 8.5715 0.1067 12 8 4.3689 9.6691 0.1748 13 6 5.2872 9.5865 1.2681 14 6 6.0937 8.2903 1.1533 15 7 5.1707 7.1467 1.1141 16 7 4.0577 2.4892 -0.0022 17 6 3.4544 1.2947 -0.0017 18 6 4.2292 0.1177 -0.0028 19 1 3.7448 -0.8476 -0.0028 20 6 5.6270 0.1995 -0.0049 21 7 6.2136 1.3685 -0.0054 22 14 6.6540 -1.3608 -0.0057 23 1 5.7567 -2.5441 -0.0043 24 1 7.5091 -1.3901 -1.2195 25 1 7.5127 -1.3888 1.2054 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2176 2.3479 0.0016 30 1 1.4100 4.5196 0.0008 31 1 5.0028 4.8491 -0.0089 32 1 2.6443 6.1214 -0.9018 33 1 2.6471 6.1294 0.8781 34 1 2.8063 8.6911 -0.7614 35 1 2.8494 8.5451 1.0128 36 1 4.7352 9.5897 2.2080 37 1 5.9644 10.4401 1.2408 38 1 6.7546 8.1952 2.0149 39 1 6.6871 8.3105 0.2392 40 1 4.6684 7.0574 1.9847 41 1 7.1819 1.4251 -0.0073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170042691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:31 Heat of formation + Delta-G solvation = -55.205569 kcal Electronic energy + Delta-G solvation = -23485.191161 eV Core-core repulsion = 19978.789485 eV Total energy + Delta-G solvation = -3506.401676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81932 -40.44717 -38.60120 -36.87529 -35.55176 -34.59182 -32.65869 -32.11859 -30.34796 -28.06023 -27.70614 -26.91710 -25.95263 -23.82312 -23.09820 -22.04154 -21.89441 -19.28324 -18.37443 -18.09886 -17.29759 -17.18397 -16.61122 -16.55770 -16.43109 -16.19070 -16.13825 -15.73396 -15.20235 -14.81133 -14.63200 -14.26801 -13.96074 -13.81282 -13.38078 -13.28845 -13.12758 -12.86385 -12.82180 -12.46923 -12.33166 -12.18950 -12.07198 -11.99461 -11.90822 -11.52330 -11.24698 -11.17298 -10.07014 -9.84907 -9.51083 -9.22562 -8.21264 -7.98282 -6.28749 1.03201 1.32693 1.43358 1.58429 1.58989 2.28808 2.58031 2.85845 2.95183 3.06116 3.17870 3.77839 3.86244 3.96338 4.03688 4.13984 4.20247 4.30996 4.40554 4.48262 4.50956 4.54059 4.61984 4.66412 4.72186 4.77357 4.77939 4.92596 4.97379 5.00759 5.04624 5.37113 5.56095 5.76430 5.87930 5.93263 6.06656 6.31522 6.31992 6.47194 6.81763 6.90512 7.10900 7.40309 8.36346 8.53505 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.004176 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.861707 B = 6702.751103 C = 8334.016791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.339 6.339 3 C -0.102 4.102 4 C -0.112 4.112 5 C -0.345 4.345 6 C 0.375 3.625 7 N -0.722 5.722 8 C 0.152 3.848 9 C 0.055 3.945 10 H 0.082 0.918 11 C 0.036 3.964 12 O -0.397 6.397 13 C 0.020 3.980 14 C 0.025 3.975 15 N -0.689 5.689 16 N -0.544 5.544 17 C 0.253 3.747 18 C -0.453 4.453 19 H 0.082 0.918 20 C 0.025 3.975 21 N -0.747 5.747 22 Si 0.984 3.016 23 H -0.259 1.259 24 H -0.266 1.266 25 H -0.265 1.265 26 H 0.047 0.953 27 H 0.110 0.890 28 H 0.047 0.953 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.397 0.603 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.345 0.655 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 12.512 2.317 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.150 4.150 4 C -0.137 4.137 5 C -0.371 4.371 6 C 0.136 3.864 7 N -0.358 5.358 8 C 0.026 3.974 9 C -0.056 4.056 10 H 0.100 0.900 11 C -0.043 4.043 12 O -0.316 6.316 13 C -0.058 4.058 14 C -0.104 4.104 15 N -0.320 5.320 16 N -0.267 5.267 17 C 0.124 3.876 18 C -0.485 4.485 19 H 0.100 0.900 20 C -0.196 4.196 21 N -0.370 5.370 22 Si 0.804 3.196 23 H -0.182 1.182 24 H -0.190 1.190 25 H -0.190 1.190 26 H 0.065 0.935 27 H 0.128 0.872 28 H 0.066 0.934 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.232 0.768 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.164 0.836 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.865 12.349 1.849 12.625 hybrid contribution -0.961 0.016 0.455 1.064 sum -2.826 12.365 2.304 12.891 Atomic orbital electron populations 1.23014 0.79191 1.03925 1.00537 1.85852 1.20992 1.27380 1.91088 1.20083 0.93232 0.84568 1.17096 1.21035 0.98824 0.91688 1.02112 1.20710 0.92606 0.97469 1.26345 1.18944 0.88702 0.87432 0.91295 1.44030 1.08193 1.00853 1.82761 1.21130 0.93280 0.81814 1.01133 1.22281 0.93729 0.93733 0.95862 0.89962 1.23197 0.91398 0.85766 1.03946 1.88040 1.48130 1.44517 1.50902 1.23433 0.92710 1.00234 0.89420 1.22689 0.95646 0.88013 1.04091 1.60714 1.21978 1.42900 1.06416 1.68328 1.36143 0.95773 1.26489 1.18217 0.86754 0.91681 0.90920 1.19747 0.91921 0.92960 1.43875 0.89965 1.26917 0.99262 1.00610 0.92852 1.70270 1.10679 1.26491 1.29567 0.85140 0.77814 0.77803 0.78798 1.18241 1.19028 1.18983 0.93467 0.87181 0.93447 0.85116 0.86097 0.76778 0.91757 0.92505 0.86858 0.91677 0.92193 0.86730 0.88169 0.90853 0.83578 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.83 113.37 1.11 2.08 16 2 O -0.34 -16.25 9.61 -89.27 -0.86 -17.11 16 3 C -0.10 -5.36 6.74 23.23 0.16 -5.21 16 4 C -0.11 -5.13 9.12 22.51 0.21 -4.93 16 5 C -0.35 -15.52 9.33 22.70 0.21 -15.31 16 6 C 0.38 18.50 7.65 133.45 1.02 19.52 16 7 N -0.72 -28.86 5.56 -344.85 -1.92 -30.78 16 8 C 0.15 4.33 4.50 86.38 0.39 4.72 16 9 C 0.05 1.29 2.79 44.92 0.13 1.42 16 10 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 11 C 0.04 0.69 6.29 72.01 0.45 1.14 16 12 O -0.40 -8.50 10.83 -148.98 -1.61 -10.11 16 13 C 0.02 0.33 7.01 72.01 0.50 0.83 16 14 C 0.02 0.47 6.76 86.31 0.58 1.05 16 15 N -0.69 -16.40 6.03 -490.68 -2.96 -19.36 16 16 N -0.54 -31.23 7.88 -186.17 -1.47 -32.70 16 17 C 0.25 14.90 6.56 40.23 0.26 15.17 16 18 C -0.45 -26.32 8.94 23.36 0.21 -26.11 16 19 H 0.08 4.70 7.31 -2.91 -0.02 4.68 16 20 C 0.03 1.35 5.50 85.28 0.47 1.82 16 21 N -0.75 -41.49 11.45 21.84 0.25 -41.24 16 22 Si 0.98 40.30 29.56 68.60 2.03 42.33 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 24 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 25 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 26 H 0.05 1.46 7.69 -2.38 -0.02 1.44 16 27 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.05 1.47 7.69 -2.39 -0.02 1.45 16 29 H 0.13 4.97 6.43 -2.91 -0.02 4.95 16 30 H 0.12 4.57 6.67 -2.91 -0.02 4.55 16 31 H 0.40 16.92 8.26 -92.70 -0.77 16.16 16 32 H 0.06 1.76 7.92 -2.38 -0.02 1.75 16 33 H 0.06 1.55 7.91 -2.39 -0.02 1.53 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 40 H 0.35 7.83 8.79 -89.69 -0.79 7.04 16 41 H 0.28 13.83 8.29 -92.71 -0.77 13.06 16 Total: -1.00 -70.42 335.34 -1.32 -71.74 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: -0.49 Total: 41.03 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 5.71 Total: -3.81 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -6.09 Total: -124.07 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -2.47 Total: -27.22 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -70.42 -1.32 -71.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170042691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.535 kcal (2) G-P(sol) polarization free energy of solvation -70.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds