Wall clock time and date at job start Tue Mar 31 2020 03:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35616 * 116.99790 * 2 1 4 4 C 1.39152 * 120.50689 * 359.97438 * 3 2 1 5 5 C 1.38306 * 118.62999 * 180.02562 * 4 3 2 6 6 C 1.39937 * 119.59449 * 0.02562 * 5 4 3 7 7 N 1.38911 * 119.49319 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00318 * 359.97438 * 7 6 5 9 9 C 1.52999 * 109.47072 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.50533 * 294.99969 * 9 8 7 11 11 C 1.53093 * 109.50327 * 174.91748 * 9 8 7 12 12 O 1.43028 * 109.25347 * 183.26254 * 11 9 8 13 13 C 1.43017 * 113.77509 * 58.60311 * 12 11 9 14 14 C 1.53101 * 109.25383 * 301.35129 * 13 12 11 15 15 N 1.47009 * 109.26008 * 56.85459 * 14 13 12 16 16 N 1.31863 * 121.00864 * 359.71479 * 6 5 4 17 17 C 1.33824 * 121.47111 * 0.57294 * 16 6 5 18 18 C 1.40915 * 119.84802 * 179.71180 * 17 16 6 19 19 H 1.08002 * 120.00197 * 179.72939 * 18 17 16 20 20 C 1.40028 * 119.99903 * 359.44406 * 18 17 16 21 21 N 1.30774 * 120.00278 * 0.28207 * 20 18 17 22 22 Si 1.86803 * 119.99845 * 180.27649 * 20 18 17 23 23 H 1.48504 * 109.47118 * 60.00518 * 22 20 18 24 24 H 1.48504 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47374 * 300.00624 * 22 20 18 26 26 H 1.08994 * 109.47365 * 59.99731 * 1 2 3 27 27 H 1.09000 * 109.47226 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46981 * 299.99570 * 1 2 3 29 29 H 1.07999 * 120.68356 * 0.04328 * 4 3 2 30 30 H 1.08005 * 120.19996 * 180.02562 * 5 4 3 31 31 H 0.97007 * 119.99733 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47203 * 300.00790 * 8 7 6 33 33 H 1.09004 * 109.46429 * 60.00245 * 8 7 6 34 34 H 1.08999 * 109.50699 * 303.15040 * 11 9 8 35 35 H 1.08999 * 109.50793 * 63.28070 * 11 9 8 36 36 H 1.09000 * 109.50340 * 181.42221 * 13 12 11 37 37 H 1.08996 * 109.54566 * 61.30738 * 13 12 11 38 38 H 1.08996 * 109.50627 * 296.91158 * 14 13 12 39 39 H 1.09001 * 109.50139 * 176.78542 * 14 13 12 40 40 H 1.00896 * 111.00129 * 177.60951 * 15 14 13 41 41 H 0.96996 * 120.00391 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 -0.0005 5 6 1.9650 3.5931 -0.0011 6 6 3.3642 3.6107 -0.0016 7 7 4.0329 4.8283 -0.0016 8 6 3.2734 6.0811 -0.0016 9 6 4.2426 7.2650 -0.0022 10 1 4.8095 7.2718 0.9288 11 6 3.4541 8.5710 -0.1300 12 8 4.3683 9.6683 -0.2067 13 6 5.2828 9.5814 -1.3029 14 6 6.0897 8.2856 -1.1857 15 7 5.1669 7.1422 -1.1389 16 7 4.0577 2.4892 0.0040 17 6 3.4543 1.2947 -0.0010 18 6 4.2291 0.1176 -0.0008 19 1 3.7447 -0.8477 -0.0004 20 6 5.6270 0.1995 -0.0072 21 7 6.2135 1.3683 -0.0077 22 14 6.6539 -1.3608 -0.0148 23 1 6.3357 -2.1570 -1.2274 24 1 8.0956 -1.0046 -0.0203 25 1 6.3470 -2.1615 1.1975 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2176 2.3479 -0.0003 30 1 1.4099 4.5196 -0.0011 31 1 5.0027 4.8490 -0.0015 32 1 2.6456 6.1254 -0.8915 33 1 2.6457 6.1254 0.8885 34 1 2.8453 8.5416 -1.0336 35 1 2.8094 8.6936 0.7402 36 1 5.9600 10.4352 -1.2804 37 1 4.7282 9.5813 -2.2412 38 1 6.6862 8.3095 -0.2737 39 1 6.7476 8.1872 -2.0492 40 1 5.6731 6.2703 -1.1007 41 1 7.1818 1.4251 -0.0118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170042692.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:33 Heat of formation + Delta-G solvation = -30.336102 kcal Electronic energy + Delta-G solvation = -23491.264979 eV Core-core repulsion = 19985.941724 eV Total energy + Delta-G solvation = -3505.323255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.62060 -38.75591 -37.00774 -35.61533 -34.04646 -33.11238 -31.45550 -30.27374 -28.71364 -27.06627 -26.41202 -25.42912 -24.64457 -22.67080 -21.40957 -20.44283 -20.12196 -17.43581 -17.30472 -16.50553 -16.28343 -16.17962 -15.38091 -15.02815 -14.97646 -14.59290 -14.57689 -14.38188 -14.15250 -13.57561 -13.16613 -13.02825 -12.63121 -12.34189 -12.25528 -11.94297 -11.56174 -11.37141 -11.24021 -11.13868 -11.12720 -10.72163 -10.55725 -10.43771 -10.38573 -9.88271 -9.77147 -9.42742 -8.54499 -8.43179 -7.98823 -7.65722 -6.36742 -6.27233 -4.34099 2.85521 3.11895 3.14995 3.15965 3.29949 3.65719 3.91511 4.00312 4.16963 4.62890 4.81395 4.83357 4.92965 4.99409 5.02635 5.15218 5.26027 5.47669 5.56991 5.69863 5.77532 5.81261 5.82565 5.89775 6.00068 6.02066 6.11664 6.14398 6.42118 6.71347 6.80404 6.81050 6.98438 7.19596 7.23329 7.31729 7.51115 7.71521 8.20504 8.30097 8.45215 8.67056 8.81150 9.19238 10.19335 10.36727 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.004184 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.678549 B = 6689.798552 C = 8327.473524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.076 4.076 4 C -0.114 4.114 5 C -0.345 4.345 6 C 0.394 3.606 7 N -0.736 5.736 8 C 0.152 3.848 9 C 0.042 3.958 10 H 0.052 0.948 11 C 0.071 3.929 12 O -0.386 6.386 13 C 0.062 3.938 14 C 0.020 3.980 15 N -0.681 5.681 16 N -0.513 5.513 17 C 0.290 3.710 18 C -0.413 4.413 19 H 0.090 0.910 20 C 0.069 3.931 21 N -0.715 5.715 22 Si 0.908 3.092 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.265 1.265 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.391 0.609 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.086 0.914 40 H 0.354 0.646 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 10.648 -1.109 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.124 4.124 4 C -0.138 4.138 5 C -0.371 4.371 6 C 0.157 3.843 7 N -0.374 5.374 8 C 0.026 3.974 9 C -0.069 4.069 10 H 0.070 0.930 11 C -0.006 4.006 12 O -0.305 6.305 13 C -0.015 4.015 14 C -0.110 4.110 15 N -0.316 5.316 16 N -0.236 5.236 17 C 0.161 3.839 18 C -0.446 4.446 19 H 0.108 0.892 20 C -0.156 4.156 21 N -0.338 5.338 22 Si 0.733 3.267 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.189 1.189 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.226 0.774 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.174 0.826 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.149 11.129 -1.421 11.279 hybrid contribution 0.208 -0.874 0.522 1.039 sum -0.941 10.256 -0.899 10.338 Atomic orbital electron populations 1.22682 0.82213 1.01485 0.99644 1.85917 1.17823 1.27917 1.90910 1.20029 0.93436 0.83110 1.15825 1.20668 0.97269 0.92372 1.03537 1.20338 0.92788 0.96324 1.27678 1.18428 0.87686 0.86565 0.91644 1.43902 1.07452 1.01513 1.84563 1.20993 0.93305 0.82131 1.01003 1.22386 0.95365 0.96221 0.92902 0.93044 1.22617 0.91047 0.84278 1.02670 1.87972 1.48000 1.44591 1.49893 1.22667 0.91885 0.96891 0.90037 1.22604 0.94887 0.91993 1.01517 1.60552 1.21592 1.05468 1.43960 1.68361 1.34751 0.94958 1.25521 1.17745 0.85003 0.91018 0.90103 1.19500 0.90535 0.93124 1.41398 0.89163 1.26067 0.98738 0.97123 0.93702 1.70153 1.10175 1.24514 1.28910 0.86379 0.78256 0.82139 0.79968 1.18923 1.20421 1.18949 0.94495 0.90203 0.94520 0.88283 0.89007 0.77437 0.92148 0.92520 0.91943 0.88251 0.88721 0.92295 0.94328 0.89614 0.82555 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.83 101.05 0.99 1.63 16 2 O -0.31 -7.36 9.61 -18.55 -0.18 -7.54 16 3 C -0.08 -1.96 6.74 -38.11 -0.26 -2.22 16 4 C -0.11 -2.65 9.12 -39.22 -0.36 -3.01 16 5 C -0.34 -7.92 9.33 -38.92 -0.36 -8.29 16 6 C 0.39 9.52 7.65 -155.26 -1.19 8.33 16 7 N -0.74 -14.34 5.46 -60.35 -0.33 -14.67 16 8 C 0.15 2.33 4.58 -4.04 -0.02 2.31 16 9 C 0.04 0.54 2.86 -67.60 -0.19 0.35 16 10 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 11 C 0.07 0.82 6.30 37.21 0.23 1.06 16 12 O -0.39 -4.77 10.82 -35.23 -0.38 -5.15 16 13 C 0.06 0.64 7.01 37.21 0.26 0.90 16 14 C 0.02 0.21 6.76 -3.71 -0.03 0.19 16 15 N -0.68 -8.90 6.55 -106.45 -0.70 -9.60 16 16 N -0.51 -14.03 7.88 -10.20 -0.08 -14.11 16 17 C 0.29 8.13 6.56 -84.85 -0.56 7.57 16 18 C -0.41 -11.38 8.94 -37.90 -0.34 -11.72 16 19 H 0.09 2.42 7.31 -52.49 -0.38 2.03 16 20 C 0.07 1.76 5.50 -17.33 -0.10 1.66 16 21 N -0.72 -18.78 11.45 55.55 0.64 -18.14 16 22 Si 0.91 18.91 29.56 -169.99 -5.02 13.88 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 26 H 0.04 0.60 7.69 -51.93 -0.40 0.21 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.10 2.00 6.43 -52.49 -0.34 1.66 16 30 H 0.09 1.87 6.67 -52.48 -0.35 1.52 16 31 H 0.39 7.55 7.24 -40.82 -0.30 7.26 16 32 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 33 H 0.06 0.84 7.91 -51.93 -0.41 0.43 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.35 4.96 7.18 -39.29 -0.28 4.67 16 41 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -30.79 333.29 -8.72 -39.51 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -5.79 Total: 12.03 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.90 Total: -1.23 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.47 Total: -56.52 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.56 Total: -12.69 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.79 -8.72 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170042692.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.173 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds