Wall clock time and date at job start Tue Mar 31 2020 03:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35616 * 116.99790 * 2 1 4 4 C 1.39152 * 120.50689 * 359.97438 * 3 2 1 5 5 C 1.38306 * 118.62999 * 180.02562 * 4 3 2 6 6 C 1.39937 * 119.59449 * 0.02562 * 5 4 3 7 7 N 1.38911 * 119.49319 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00318 * 359.97438 * 7 6 5 9 9 C 1.52999 * 109.47072 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.50533 * 294.99969 * 9 8 7 11 11 C 1.53093 * 109.50327 * 174.91748 * 9 8 7 12 12 O 1.43028 * 109.25347 * 183.26254 * 11 9 8 13 13 C 1.43017 * 113.77509 * 58.60311 * 12 11 9 14 14 C 1.53101 * 109.25383 * 301.35129 * 13 12 11 15 15 N 1.47009 * 109.26008 * 56.85459 * 14 13 12 16 16 N 1.31863 * 121.00864 * 359.71479 * 6 5 4 17 17 C 1.33824 * 121.47111 * 0.57294 * 16 6 5 18 18 C 1.40915 * 119.84802 * 179.71180 * 17 16 6 19 19 H 1.08002 * 120.00197 * 179.72939 * 18 17 16 20 20 C 1.40028 * 119.99903 * 359.44406 * 18 17 16 21 21 N 1.30774 * 120.00278 * 0.28207 * 20 18 17 22 22 Si 1.86803 * 119.99845 * 180.27649 * 20 18 17 23 23 H 1.48504 * 109.47118 * 60.00518 * 22 20 18 24 24 H 1.48504 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47374 * 300.00624 * 22 20 18 26 26 H 1.08994 * 109.47365 * 59.99731 * 1 2 3 27 27 H 1.09000 * 109.47226 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46981 * 299.99570 * 1 2 3 29 29 H 1.07999 * 120.68356 * 0.04328 * 4 3 2 30 30 H 1.08005 * 120.19996 * 180.02562 * 5 4 3 31 31 H 0.97007 * 119.99733 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.47203 * 300.00790 * 8 7 6 33 33 H 1.09004 * 109.46429 * 60.00245 * 8 7 6 34 34 H 1.08999 * 109.50699 * 303.15040 * 11 9 8 35 35 H 1.08999 * 109.50793 * 63.28070 * 11 9 8 36 36 H 1.09000 * 109.50340 * 181.42221 * 13 12 11 37 37 H 1.08996 * 109.54566 * 61.30738 * 13 12 11 38 38 H 1.08996 * 109.50627 * 296.91158 * 14 13 12 39 39 H 1.09001 * 109.50139 * 176.78542 * 14 13 12 40 40 H 1.00896 * 111.00129 * 177.60951 * 15 14 13 41 41 H 0.96996 * 120.00391 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 -0.0005 5 6 1.9650 3.5931 -0.0011 6 6 3.3642 3.6107 -0.0016 7 7 4.0329 4.8283 -0.0016 8 6 3.2734 6.0811 -0.0016 9 6 4.2426 7.2650 -0.0022 10 1 4.8095 7.2718 0.9288 11 6 3.4541 8.5710 -0.1300 12 8 4.3683 9.6683 -0.2067 13 6 5.2828 9.5814 -1.3029 14 6 6.0897 8.2856 -1.1857 15 7 5.1669 7.1422 -1.1389 16 7 4.0577 2.4892 0.0040 17 6 3.4543 1.2947 -0.0010 18 6 4.2291 0.1176 -0.0008 19 1 3.7447 -0.8477 -0.0004 20 6 5.6270 0.1995 -0.0072 21 7 6.2135 1.3683 -0.0077 22 14 6.6539 -1.3608 -0.0148 23 1 6.3357 -2.1570 -1.2274 24 1 8.0956 -1.0046 -0.0203 25 1 6.3470 -2.1615 1.1975 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2176 2.3479 -0.0003 30 1 1.4099 4.5196 -0.0011 31 1 5.0027 4.8490 -0.0015 32 1 2.6456 6.1254 -0.8915 33 1 2.6457 6.1254 0.8885 34 1 2.8453 8.5416 -1.0336 35 1 2.8094 8.6936 0.7402 36 1 5.9600 10.4352 -1.2804 37 1 4.7282 9.5813 -2.2412 38 1 6.6862 8.3095 -0.2737 39 1 6.7476 8.1872 -2.0492 40 1 5.6731 6.2703 -1.1007 41 1 7.1818 1.4251 -0.0118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170042692.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:33 Heat of formation + Delta-G solvation = -53.191445 kcal Electronic energy + Delta-G solvation = -23492.256061 eV Core-core repulsion = 19985.941724 eV Total energy + Delta-G solvation = -3506.314337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.76877 -40.37652 -38.64191 -36.98789 -35.58610 -34.59140 -32.66557 -32.15009 -30.36490 -28.16779 -27.90707 -27.02627 -26.00887 -23.88089 -23.09241 -22.08451 -21.23276 -19.30455 -18.62472 -18.20009 -17.61058 -17.28049 -16.60056 -16.58895 -16.37370 -16.18310 -15.75849 -15.64175 -15.24086 -14.84784 -14.78753 -14.54126 -14.22474 -13.91483 -13.54959 -13.29412 -13.13223 -12.89279 -12.81566 -12.48985 -12.30567 -12.23380 -12.05624 -11.94615 -11.59575 -11.54991 -11.24963 -10.79683 -10.11617 -9.88554 -9.58046 -9.53280 -8.24725 -8.06142 -6.30981 1.01592 1.29324 1.42346 1.53919 1.59474 2.27125 2.48981 2.88341 2.92406 3.00968 3.08218 3.83780 3.89644 3.98483 4.03930 4.07459 4.26421 4.30151 4.37859 4.47075 4.53213 4.56841 4.61923 4.68464 4.71028 4.76929 4.83067 4.92208 4.93354 4.95399 5.03674 5.33954 5.52334 5.72851 5.84208 5.87885 6.11398 6.12811 6.27602 6.43337 6.74228 6.84676 6.98994 7.34917 8.30703 8.50097 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.004184 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.678549 B = 6689.798552 C = 8327.473524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C -0.099 4.099 4 C -0.113 4.113 5 C -0.342 4.342 6 C 0.375 3.625 7 N -0.729 5.729 8 C 0.153 3.847 9 C 0.051 3.949 10 H 0.044 0.956 11 C 0.074 3.926 12 O -0.399 6.399 13 C 0.060 3.940 14 C 0.019 3.981 15 N -0.691 5.691 16 N -0.542 5.542 17 C 0.253 3.747 18 C -0.453 4.453 19 H 0.083 0.917 20 C 0.027 3.973 21 N -0.748 5.748 22 Si 0.984 3.016 23 H -0.262 1.262 24 H -0.266 1.266 25 H -0.262 1.262 26 H 0.047 0.953 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.132 0.868 30 H 0.121 0.879 31 H 0.389 0.611 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.100 0.900 40 H 0.345 0.655 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 11.593 -1.236 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.368 4.368 6 C 0.137 3.863 7 N -0.366 5.366 8 C 0.028 3.972 9 C -0.060 4.060 10 H 0.062 0.938 11 C -0.004 4.004 12 O -0.318 6.318 13 C -0.017 4.017 14 C -0.110 4.110 15 N -0.325 5.325 16 N -0.266 5.266 17 C 0.124 3.876 18 C -0.485 4.485 19 H 0.101 0.899 20 C -0.195 4.195 21 N -0.371 5.371 22 Si 0.804 3.196 23 H -0.186 1.186 24 H -0.190 1.190 25 H -0.186 1.186 26 H 0.066 0.934 27 H 0.129 0.871 28 H 0.066 0.934 29 H 0.150 0.850 30 H 0.139 0.861 31 H 0.224 0.776 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.118 0.882 40 H 0.164 0.836 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.746 12.132 -1.551 12.355 hybrid contribution 0.256 -1.043 0.544 1.204 sum -1.491 11.089 -1.007 11.234 Atomic orbital electron populations 1.23021 0.79131 1.03980 1.00568 1.85852 1.21038 1.27320 1.91036 1.20086 0.93244 0.84584 1.16787 1.21043 0.98901 0.91651 1.02110 1.20715 0.92614 0.97536 1.25968 1.18858 0.88708 0.87217 0.91517 1.44031 1.07608 1.01470 1.83536 1.21152 0.93644 0.81091 1.01266 1.22298 0.95010 0.96032 0.92649 0.93786 1.22662 0.90842 0.83149 1.03704 1.87962 1.48413 1.44660 1.50727 1.22842 0.91921 0.97326 0.89579 1.22707 0.94810 0.91469 1.02036 1.60613 1.22191 1.05823 1.43871 1.68303 1.36088 0.95723 1.26444 1.18186 0.86744 0.91634 0.91010 1.19705 0.91957 0.92980 1.43864 0.89902 1.26892 0.99195 1.00637 0.92770 1.70227 1.10769 1.26553 1.29517 0.85250 0.76813 0.77627 0.79888 1.18603 1.18988 1.18629 0.93441 0.87122 0.93428 0.85048 0.86104 0.77637 0.92197 0.91580 0.91590 0.86540 0.86350 0.92054 0.94609 0.88199 0.83578 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.83 113.37 1.11 2.06 16 2 O -0.34 -16.05 9.61 -89.28 -0.86 -16.91 16 3 C -0.10 -5.17 6.74 23.23 0.16 -5.01 16 4 C -0.11 -5.13 9.12 22.51 0.21 -4.92 16 5 C -0.34 -15.36 9.33 22.70 0.21 -15.14 16 6 C 0.38 18.25 7.65 133.45 1.02 19.27 16 7 N -0.73 -28.42 5.46 -344.85 -1.88 -30.30 16 8 C 0.15 4.51 4.58 86.38 0.40 4.90 16 9 C 0.05 1.26 2.86 44.92 0.13 1.39 16 10 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 11 C 0.07 1.55 6.30 72.01 0.45 2.01 16 12 O -0.40 -9.02 10.82 -148.98 -1.61 -10.63 16 13 C 0.06 1.10 7.01 72.02 0.50 1.60 16 14 C 0.02 0.38 6.76 86.32 0.58 0.97 16 15 N -0.69 -17.48 6.55 -490.71 -3.21 -20.69 16 16 N -0.54 -30.54 7.88 -186.18 -1.47 -32.00 16 17 C 0.25 14.69 6.56 40.23 0.26 14.96 16 18 C -0.45 -25.95 8.94 23.36 0.21 -25.74 16 19 H 0.08 4.65 7.31 -2.91 -0.02 4.63 16 20 C 0.03 1.41 5.50 85.28 0.47 1.88 16 21 N -0.75 -40.44 11.45 21.84 0.25 -40.19 16 22 Si 0.98 39.55 29.56 68.60 2.03 41.58 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 26 H 0.05 1.46 7.69 -2.39 -0.02 1.44 16 27 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.05 1.46 7.69 -2.39 -0.02 1.44 16 29 H 0.13 4.98 6.43 -2.91 -0.02 4.96 16 30 H 0.12 4.61 6.67 -2.91 -0.02 4.59 16 31 H 0.39 15.33 7.24 -92.70 -0.67 14.66 16 32 H 0.06 1.79 7.92 -2.39 -0.02 1.77 16 33 H 0.07 1.84 7.91 -2.39 -0.02 1.82 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.34 9.66 7.18 -89.70 -0.64 9.02 16 41 H 0.28 13.50 8.29 -92.71 -0.77 12.73 16 Total: -1.00 -68.52 333.29 -1.29 -69.81 By element: Atomic # 1 Polarization: 41.37 SS G_CDS: -0.25 Total: 41.12 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 5.72 Total: -1.79 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -6.31 Total: -123.18 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -2.47 Total: -27.54 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -68.52 -1.29 -69.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170042692.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.621 kcal (2) G-P(sol) polarization free energy of solvation -68.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds