Wall clock time and date at job start Tue Mar 31 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35625 * 116.99979 * 2 1 4 4 C 1.39149 * 120.50048 * 0.02562 * 3 2 1 5 5 C 1.38311 * 118.62555 * 180.02562 * 4 3 2 6 6 C 1.39936 * 119.59622 * 359.97438 * 5 4 3 7 7 N 1.38910 * 119.49804 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99726 * 0.02562 * 7 6 5 9 9 H 1.09000 * 110.62995 * 34.30347 * 8 7 6 10 10 C 1.54320 * 110.70958 * 271.19336 * 8 7 6 11 11 N 1.47436 * 107.23663 * 219.33254 * 10 8 7 12 12 C 1.47848 * 108.56568 * 359.01433 * 11 10 8 13 13 C 1.55114 * 104.90794 * 23.97119 * 12 11 10 14 14 H 1.08993 * 110.92441 * 81.16937 * 13 12 11 15 15 C 1.52999 * 111.14802 * 205.05416 * 13 12 11 16 16 O 1.42894 * 109.46924 * 287.23931 * 15 13 12 17 17 N 1.31867 * 121.01192 * 0.02864 * 6 5 4 18 18 C 1.33834 * 121.46728 * 359.64817 * 17 6 5 19 19 C 1.40915 * 119.84837 * 180.31518 * 18 17 6 20 20 H 1.07995 * 119.99930 * 180.31947 * 19 18 17 21 21 C 1.40027 * 120.00020 * 0.31656 * 19 18 17 22 22 N 1.30776 * 120.00105 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99824 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46877 * 90.00415 * 23 21 19 25 25 H 1.48502 * 109.46953 * 210.00067 * 23 21 19 26 26 H 1.48492 * 109.47321 * 330.00458 * 23 21 19 27 27 H 1.09002 * 109.47220 * 299.99742 * 1 2 3 28 28 H 1.08996 * 109.47672 * 59.99686 * 1 2 3 29 29 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.68896 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.20476 * 180.02562 * 5 4 3 32 32 H 0.97005 * 120.00312 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.88301 * 338.74432 * 10 8 7 34 34 H 1.09002 * 109.88680 * 99.92324 * 10 8 7 35 35 H 1.00906 * 110.99880 * 121.27470 * 11 10 8 36 36 H 1.09003 * 110.37903 * 142.92142 * 12 11 10 37 37 H 1.09000 * 110.37088 * 265.15198 * 12 11 10 38 38 H 1.09003 * 109.47328 * 47.23899 * 15 13 12 39 39 H 1.09002 * 109.47502 * 167.24059 * 15 13 12 40 40 H 0.96703 * 114.00268 * 180.02562 * 16 15 13 41 41 H 0.97003 * 120.00402 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2970 2.3820 0.0005 5 6 1.9649 3.5932 0.0000 6 6 3.3641 3.6108 -0.0006 7 7 4.0328 4.8283 -0.0006 8 6 3.2734 6.0811 0.0005 9 1 2.3541 5.9724 0.5761 10 6 2.9636 6.5328 -1.4422 11 7 3.1179 7.9984 -1.4838 12 6 3.4840 8.4718 -0.1318 13 6 4.1352 7.2445 0.5579 14 1 5.1775 7.1369 0.2578 15 6 4.0122 7.3371 2.0801 16 8 4.9049 8.3396 2.5700 17 7 4.0577 2.4892 -0.0011 18 6 3.4543 1.2947 0.0058 19 6 4.2291 0.1176 0.0117 20 1 3.7447 -0.8476 0.0121 21 6 5.6269 0.1995 0.0170 22 7 6.2134 1.3684 0.0170 23 14 6.6539 -1.3608 0.0255 24 1 6.9316 -1.7782 -1.3723 25 1 7.9361 -1.1056 0.7299 26 1 5.9105 -2.4388 0.7256 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2176 2.3479 0.0014 31 1 1.4099 4.5197 0.0008 32 1 5.0027 4.8491 -0.0013 33 1 3.6639 6.0662 -2.1351 34 1 1.9415 6.2599 -1.7048 35 1 3.8137 8.2696 -2.1625 36 1 4.1968 9.2938 -0.1975 37 1 2.5942 8.7848 0.4144 38 1 2.9886 7.6005 2.3466 39 1 4.2672 6.3750 2.5245 40 1 4.8805 8.4529 3.5301 41 1 7.1818 1.4252 0.0210 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170777960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:36 Heat of formation + Delta-G solvation = -37.076710 kcal Electronic energy + Delta-G solvation = -23781.133961 eV Core-core repulsion = 20275.518412 eV Total energy + Delta-G solvation = -3505.615549 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.39613 -38.58617 -36.80484 -36.32495 -34.23900 -32.94980 -30.72396 -30.31950 -29.05983 -27.18622 -26.30805 -25.10660 -24.64109 -21.69449 -21.45072 -20.39273 -19.97868 -17.67724 -17.28044 -16.59937 -16.44258 -16.31059 -15.44257 -14.89436 -14.78851 -14.68438 -14.61234 -13.91110 -13.44497 -13.19223 -13.04099 -12.66832 -12.54497 -12.30918 -12.24833 -11.74428 -11.56940 -11.46789 -11.21499 -11.16582 -11.06408 -10.67504 -10.52325 -10.45248 -10.38924 -10.03201 -9.80091 -9.48366 -8.71054 -8.28431 -8.02025 -7.68503 -6.39182 -6.31256 -4.36652 2.81302 3.11464 3.11982 3.16192 3.26344 3.92313 3.98906 4.00773 4.49862 4.61466 4.73515 4.79827 4.94492 4.97141 5.38824 5.43333 5.44535 5.53048 5.76620 5.78661 5.80534 5.81027 5.94419 5.98025 6.00933 6.09867 6.19938 6.25568 6.41901 6.70143 6.78227 6.82652 7.19475 7.27423 7.36661 7.48927 7.53361 7.68977 8.18240 8.27623 8.42407 8.65403 8.78639 9.16403 10.16221 10.34034 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.004725 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.249906 B = 5924.316789 C = 7107.792513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.076 4.076 4 C -0.113 4.113 5 C -0.346 4.346 6 C 0.393 3.607 7 N -0.729 5.729 8 C 0.159 3.841 9 H 0.088 0.912 10 C 0.031 3.969 11 N -0.685 5.685 12 C 0.060 3.940 13 C -0.128 4.128 14 H 0.087 0.913 15 C 0.089 3.911 16 O -0.575 6.575 17 N -0.513 5.513 18 C 0.289 3.711 19 C -0.412 4.412 20 H 0.091 0.909 21 C 0.068 3.932 22 N -0.714 5.714 23 Si 0.908 3.092 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.261 1.261 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.396 0.604 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.337 0.663 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.378 0.622 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 9.165 1.934 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.123 4.123 4 C -0.138 4.138 5 C -0.373 4.373 6 C 0.155 3.845 7 N -0.366 5.366 8 C 0.049 3.951 9 H 0.106 0.894 10 C -0.100 4.100 11 N -0.313 5.313 12 C -0.070 4.070 13 C -0.148 4.148 14 H 0.105 0.895 15 C 0.011 3.989 16 O -0.381 6.381 17 N -0.235 5.235 18 C 0.160 3.840 19 C -0.444 4.444 20 H 0.109 0.891 21 C -0.157 4.157 22 N -0.336 5.336 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.184 1.184 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.231 0.769 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.152 0.848 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.225 0.775 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.042 9.387 1.336 9.957 hybrid contribution 0.330 -0.802 0.642 1.079 sum -2.712 8.585 1.978 9.218 Atomic orbital electron populations 1.22683 0.82176 1.01509 0.99651 1.85919 1.17852 1.27916 1.90894 1.20033 0.93424 0.83121 1.15749 1.20669 0.97284 0.92356 1.03487 1.20359 0.92789 0.96306 1.27806 1.18461 0.87698 0.86596 0.91704 1.44039 1.07551 1.01016 1.83948 1.21762 0.94943 0.83204 0.95146 0.89388 1.23208 1.02441 0.86719 0.97642 1.61767 1.50804 1.11912 1.06840 1.22852 0.99011 0.95872 0.89277 1.22967 1.00991 0.96395 0.94464 0.89467 1.22056 0.92310 0.90984 0.93536 1.86443 1.64962 1.59627 1.27028 1.68381 1.34744 0.94959 1.25421 1.17760 0.85020 0.91017 0.90157 1.19542 0.90528 0.93150 1.41178 0.89098 1.26081 0.98770 0.97156 0.93730 1.70161 1.10192 1.24487 1.28739 0.86319 0.79046 0.82229 0.79197 1.19458 1.20283 1.18450 0.94512 0.94485 0.90185 0.88274 0.88941 0.76883 0.92020 0.90286 0.84802 0.91150 0.90517 0.93434 0.92828 0.77539 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.83 101.05 0.99 1.62 16 2 O -0.31 -7.31 9.61 -18.57 -0.18 -7.48 16 3 C -0.08 -1.92 6.74 -38.11 -0.26 -2.18 16 4 C -0.11 -2.60 9.12 -39.22 -0.36 -2.96 16 5 C -0.35 -7.79 9.24 -38.92 -0.36 -8.15 16 6 C 0.39 9.29 7.65 -155.26 -1.19 8.10 16 7 N -0.73 -14.05 5.28 -52.09 -0.28 -14.33 16 8 C 0.16 2.44 2.38 -66.10 -0.16 2.28 16 9 H 0.09 1.41 6.36 -51.93 -0.33 1.08 16 10 C 0.03 0.45 7.34 -2.84 -0.02 0.43 16 11 N -0.69 -8.63 7.39 -110.67 -0.82 -9.45 16 12 C 0.06 0.71 7.02 -2.18 -0.02 0.69 16 13 C -0.13 -1.68 2.92 -88.37 -0.26 -1.93 16 14 H 0.09 1.23 8.01 -51.93 -0.42 0.81 16 15 C 0.09 1.09 6.50 37.16 0.24 1.34 16 16 O -0.58 -6.63 13.63 -35.23 -0.48 -7.11 16 17 N -0.51 -13.87 7.88 -10.20 -0.08 -13.95 16 18 C 0.29 8.02 6.56 -84.84 -0.56 7.46 16 19 C -0.41 -11.26 8.94 -37.90 -0.34 -11.60 16 20 H 0.09 2.42 7.31 -52.49 -0.38 2.04 16 21 C 0.07 1.73 5.50 -17.33 -0.10 1.63 16 22 N -0.71 -18.72 11.45 55.55 0.64 -18.09 16 23 Si 0.91 18.85 29.56 -169.99 -5.02 13.82 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 27 H 0.04 0.59 7.69 -51.93 -0.40 0.20 16 28 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.98 6.43 -52.49 -0.34 1.64 16 31 H 0.09 1.86 6.20 -52.49 -0.33 1.54 16 32 H 0.40 7.79 8.66 -40.82 -0.35 7.44 16 33 H 0.06 0.97 8.03 -51.93 -0.42 0.55 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.34 3.76 8.91 -39.29 -0.35 3.41 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 38 H 0.05 0.52 7.97 -51.93 -0.41 0.11 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.38 2.67 9.12 45.56 0.42 3.09 16 41 H 0.27 6.44 8.30 -40.82 -0.34 6.11 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -30.74 337.01 -8.46 -39.20 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -4.95 Total: 15.56 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.37 Total: -3.25 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.54 Total: -55.81 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.66 Total: -14.60 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.74 -8.46 -39.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170777960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.125 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds