Wall clock time and date at job start Tue Mar 31 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35625 * 116.99979 * 2 1 4 4 C 1.39149 * 120.50048 * 0.02562 * 3 2 1 5 5 C 1.38311 * 118.62555 * 180.02562 * 4 3 2 6 6 C 1.39936 * 119.59622 * 359.97438 * 5 4 3 7 7 N 1.38910 * 119.49804 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99726 * 0.02562 * 7 6 5 9 9 H 1.09000 * 110.62995 * 34.30347 * 8 7 6 10 10 C 1.54320 * 110.70958 * 271.19336 * 8 7 6 11 11 N 1.47436 * 107.23663 * 219.33254 * 10 8 7 12 12 C 1.47848 * 108.56568 * 359.01433 * 11 10 8 13 13 C 1.55114 * 104.90794 * 23.97119 * 12 11 10 14 14 H 1.08993 * 110.92441 * 81.16937 * 13 12 11 15 15 C 1.52999 * 111.14802 * 205.05416 * 13 12 11 16 16 O 1.42894 * 109.46924 * 287.23931 * 15 13 12 17 17 N 1.31867 * 121.01192 * 0.02864 * 6 5 4 18 18 C 1.33834 * 121.46728 * 359.64817 * 17 6 5 19 19 C 1.40915 * 119.84837 * 180.31518 * 18 17 6 20 20 H 1.07995 * 119.99930 * 180.31947 * 19 18 17 21 21 C 1.40027 * 120.00020 * 0.31656 * 19 18 17 22 22 N 1.30776 * 120.00105 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99824 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46877 * 90.00415 * 23 21 19 25 25 H 1.48502 * 109.46953 * 210.00067 * 23 21 19 26 26 H 1.48492 * 109.47321 * 330.00458 * 23 21 19 27 27 H 1.09002 * 109.47220 * 299.99742 * 1 2 3 28 28 H 1.08996 * 109.47672 * 59.99686 * 1 2 3 29 29 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.68896 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.20476 * 180.02562 * 5 4 3 32 32 H 0.97005 * 120.00312 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.88301 * 338.74432 * 10 8 7 34 34 H 1.09002 * 109.88680 * 99.92324 * 10 8 7 35 35 H 1.00906 * 110.99880 * 121.27470 * 11 10 8 36 36 H 1.09003 * 110.37903 * 142.92142 * 12 11 10 37 37 H 1.09000 * 110.37088 * 265.15198 * 12 11 10 38 38 H 1.09003 * 109.47328 * 47.23899 * 15 13 12 39 39 H 1.09002 * 109.47502 * 167.24059 * 15 13 12 40 40 H 0.96703 * 114.00268 * 180.02562 * 16 15 13 41 41 H 0.97003 * 120.00402 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2970 2.3820 0.0005 5 6 1.9649 3.5932 0.0000 6 6 3.3641 3.6108 -0.0006 7 7 4.0328 4.8283 -0.0006 8 6 3.2734 6.0811 0.0005 9 1 2.3541 5.9724 0.5761 10 6 2.9636 6.5328 -1.4422 11 7 3.1179 7.9984 -1.4838 12 6 3.4840 8.4718 -0.1318 13 6 4.1352 7.2445 0.5579 14 1 5.1775 7.1369 0.2578 15 6 4.0122 7.3371 2.0801 16 8 4.9049 8.3396 2.5700 17 7 4.0577 2.4892 -0.0011 18 6 3.4543 1.2947 0.0058 19 6 4.2291 0.1176 0.0117 20 1 3.7447 -0.8476 0.0121 21 6 5.6269 0.1995 0.0170 22 7 6.2134 1.3684 0.0170 23 14 6.6539 -1.3608 0.0255 24 1 6.9316 -1.7782 -1.3723 25 1 7.9361 -1.1056 0.7299 26 1 5.9105 -2.4388 0.7256 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2176 2.3479 0.0014 31 1 1.4099 4.5197 0.0008 32 1 5.0027 4.8491 -0.0013 33 1 3.6639 6.0662 -2.1351 34 1 1.9415 6.2599 -1.7048 35 1 3.8137 8.2696 -2.1625 36 1 4.1968 9.2938 -0.1975 37 1 2.5942 8.7848 0.4144 38 1 2.9886 7.6005 2.3466 39 1 4.2672 6.3750 2.5245 40 1 4.8805 8.4529 3.5301 41 1 7.1818 1.4252 0.0210 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170777960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:36 Heat of formation + Delta-G solvation = -62.131980 kcal Electronic energy + Delta-G solvation = -23782.220439 eV Core-core repulsion = 20275.518412 eV Total energy + Delta-G solvation = -3506.702027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.85239 -40.09095 -38.41225 -37.35937 -35.94173 -34.62265 -32.18251 -31.85863 -30.65628 -28.54151 -27.92575 -26.83311 -25.70768 -23.48145 -22.85418 -21.73473 -21.36160 -19.36778 -18.55392 -18.15324 -18.06820 -17.57750 -16.75685 -16.44767 -16.26515 -16.20253 -15.88563 -15.37311 -14.91886 -14.51455 -14.35426 -14.26364 -13.99640 -13.93541 -13.35485 -13.25848 -13.02205 -12.90754 -12.74480 -12.70344 -12.42330 -12.17911 -12.06111 -11.95163 -11.70254 -11.55784 -11.28172 -10.96051 -10.22775 -9.93569 -9.57658 -9.47512 -8.26342 -8.08483 -6.32321 0.98936 1.27633 1.41504 1.54058 1.57686 2.25896 2.47164 2.90487 3.02781 3.04246 3.41916 3.64901 3.83550 3.90649 4.01030 4.22874 4.26702 4.34557 4.40732 4.46162 4.52520 4.54199 4.61807 4.70921 4.74436 4.76427 4.88778 4.90129 4.96709 5.04677 5.20011 5.32259 5.51174 5.69532 5.77881 5.87235 6.26088 6.38319 6.42574 6.72006 6.83474 6.84344 6.96956 7.33380 8.28948 8.48343 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.004725 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.249906 B = 5924.316789 C = 7107.792513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.338 6.338 3 C -0.098 4.098 4 C -0.112 4.112 5 C -0.340 4.340 6 C 0.377 3.623 7 N -0.722 5.722 8 C 0.156 3.844 9 H 0.087 0.913 10 C 0.039 3.961 11 N -0.682 5.682 12 C 0.066 3.934 13 C -0.121 4.121 14 H 0.076 0.924 15 C 0.095 3.905 16 O -0.585 6.585 17 N -0.543 5.543 18 C 0.253 3.747 19 C -0.451 4.451 20 H 0.083 0.917 21 C 0.026 3.974 22 N -0.748 5.748 23 Si 0.984 3.016 24 H -0.264 1.264 25 H -0.266 1.266 26 H -0.259 1.259 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.392 0.608 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.347 0.653 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.398 0.602 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 10.297 2.180 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.146 4.146 4 C -0.136 4.136 5 C -0.366 4.366 6 C 0.139 3.861 7 N -0.357 5.357 8 C 0.049 3.951 9 H 0.105 0.895 10 C -0.092 4.092 11 N -0.310 5.310 12 C -0.063 4.063 13 C -0.142 4.142 14 H 0.094 0.906 15 C 0.017 3.983 16 O -0.393 6.393 17 N -0.266 5.266 18 C 0.124 3.876 19 C -0.483 4.483 20 H 0.101 0.899 21 C -0.196 4.196 22 N -0.371 5.371 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.191 1.191 26 H -0.183 1.183 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.129 0.871 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.226 0.774 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.163 0.837 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.248 0.752 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.880 10.577 1.593 11.379 hybrid contribution 0.448 -1.007 0.582 1.246 sum -3.432 9.571 2.175 10.398 Atomic orbital electron populations 1.23020 0.79100 1.03984 1.00579 1.85854 1.21062 1.27348 1.91025 1.20079 0.93204 0.84575 1.16702 1.21038 0.98888 0.91627 1.02059 1.20696 0.92561 0.97394 1.25958 1.18843 0.88645 0.87132 0.91455 1.44143 1.07479 1.01027 1.83089 1.21936 0.94955 0.82233 0.95986 0.89510 1.23015 1.01619 0.88043 0.96544 1.61760 1.51419 1.10187 1.07649 1.22876 0.99572 0.95358 0.88494 1.22894 0.99988 0.95868 0.95417 0.90558 1.21924 0.93338 0.90424 0.92654 1.86391 1.64849 1.59025 1.29070 1.68318 1.36138 0.95764 1.26377 1.18189 0.86754 0.91600 0.91025 1.19726 0.91896 0.92991 1.43674 0.89885 1.26906 0.99256 1.00632 0.92786 1.70238 1.10749 1.26542 1.29543 0.85188 0.77298 0.77709 0.79366 1.18844 1.19081 1.18310 0.93404 0.93439 0.87137 0.85081 0.86265 0.77405 0.93445 0.90846 0.83714 0.89728 0.89606 0.91688 0.94794 0.75247 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.83 113.37 1.11 2.05 16 2 O -0.34 -15.97 9.61 -89.37 -0.86 -16.83 16 3 C -0.10 -5.05 6.74 23.23 0.16 -4.89 16 4 C -0.11 -5.02 9.12 22.51 0.21 -4.82 16 5 C -0.34 -15.03 9.24 22.70 0.21 -14.82 16 6 C 0.38 18.10 7.65 133.45 1.02 19.12 16 7 N -0.72 -28.09 5.28 -318.73 -1.68 -29.78 16 8 C 0.16 4.66 2.38 46.18 0.11 4.77 16 9 H 0.09 2.63 6.36 -2.39 -0.02 2.62 16 10 C 0.04 1.10 7.34 86.65 0.64 1.74 16 11 N -0.68 -15.69 7.39 -504.04 -3.73 -19.42 16 12 C 0.07 1.40 7.02 86.85 0.61 2.01 16 13 C -0.12 -3.00 2.92 -9.33 -0.03 -3.03 16 14 H 0.08 2.09 8.01 -2.39 -0.02 2.07 16 15 C 0.09 2.17 6.50 71.98 0.47 2.64 16 16 O -0.58 -12.26 13.63 -148.98 -2.03 -14.29 16 17 N -0.54 -30.40 7.88 -186.17 -1.47 -31.86 16 18 C 0.25 14.58 6.56 40.23 0.26 14.85 16 19 C -0.45 -25.70 8.94 23.36 0.21 -25.49 16 20 H 0.08 4.65 7.31 -2.91 -0.02 4.63 16 21 C 0.03 1.36 5.50 85.28 0.47 1.83 16 22 N -0.75 -40.57 11.45 21.84 0.25 -40.32 16 23 Si 0.98 39.57 29.56 68.60 2.03 41.60 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 26 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 27 H 0.05 1.45 7.69 -2.39 -0.02 1.43 16 28 H 0.05 1.45 7.69 -2.39 -0.02 1.43 16 29 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 30 H 0.13 4.92 6.43 -2.91 -0.02 4.90 16 31 H 0.12 4.54 6.20 -2.91 -0.02 4.53 16 32 H 0.39 15.83 8.66 -92.70 -0.80 15.03 16 33 H 0.05 1.47 8.03 -2.39 -0.02 1.45 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.35 7.01 8.91 -89.69 -0.80 6.21 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.70 7.91 -2.39 -0.02 1.68 16 38 H 0.06 1.26 7.97 -2.39 -0.02 1.24 16 39 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.40 4.75 9.12 -74.06 -0.68 4.07 16 41 H 0.28 13.55 8.30 -92.71 -0.77 12.78 16 Total: -1.00 -68.63 337.01 -3.23 -71.86 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -1.19 Total: 43.10 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 5.44 Total: -4.06 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -6.63 Total: -121.38 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -2.89 Total: -31.12 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -68.63 -3.23 -71.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170777960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.731 kcal (2) G-P(sol) polarization free energy of solvation -68.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds