Wall clock time and date at job start Tue Mar 31 2020 03:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35616 * 116.99593 * 2 1 4 4 C 1.39160 * 120.50685 * 359.97262 * 3 2 1 5 5 C 1.38306 * 118.63215 * 179.76996 * 4 3 2 6 6 C 1.39947 * 119.59214 * 0.47957 * 5 4 3 7 7 N 1.38905 * 119.49346 * 179.78843 * 6 5 4 8 8 C 1.46501 * 120.00008 * 359.72641 * 7 6 5 9 9 H 1.08995 * 110.27526 * 32.91332 * 8 7 6 10 10 C 1.53988 * 110.39166 * 270.76359 * 8 7 6 11 11 N 1.47907 * 107.06355 * 239.81849 * 10 8 7 12 12 C 1.48528 * 105.81481 * 25.33078 * 11 10 8 13 13 C 1.54593 * 110.30797 * 155.00384 * 8 7 6 14 14 H 1.09001 * 110.72642 * 215.59362 * 13 8 7 15 15 C 1.53001 * 110.72313 * 338.69472 * 13 8 7 16 16 O 1.42905 * 109.47254 * 185.00301 * 15 13 8 17 17 N 1.31865 * 121.00792 * 359.51063 * 6 5 4 18 18 C 1.33821 * 121.47311 * 0.25367 * 17 6 5 19 19 C 1.40920 * 119.85164 * 179.97438 * 18 17 6 20 20 H 1.07987 * 120.00065 * 173.59764 * 19 18 17 21 21 C 1.40029 * 119.99422 * 353.60030 * 19 18 17 22 22 N 1.30780 * 120.00365 * 6.27102 * 21 19 18 23 23 Si 1.86795 * 119.99555 * 186.27878 * 21 19 18 24 24 H 1.48503 * 109.47231 * 94.98451 * 23 21 19 25 25 H 1.48504 * 109.47112 * 214.98141 * 23 21 19 26 26 H 1.48502 * 109.47299 * 334.97988 * 23 21 19 27 27 H 1.08994 * 109.47529 * 300.00150 * 1 2 3 28 28 H 1.08995 * 109.46820 * 60.00533 * 1 2 3 29 29 H 1.09003 * 109.46729 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.68343 * 0.03053 * 4 3 2 31 31 H 1.08001 * 120.20694 * 180.24708 * 5 4 3 32 32 H 0.96999 * 119.99458 * 179.72598 * 7 6 5 33 33 H 1.09008 * 109.92008 * 359.17378 * 10 8 7 34 34 H 1.09002 * 109.91692 * 120.46630 * 10 8 7 35 35 H 1.00901 * 110.99379 * 264.82183 * 11 10 8 36 36 H 1.09005 * 110.66689 * 202.35911 * 12 11 10 37 37 H 1.09000 * 110.67276 * 79.22804 * 12 11 10 38 38 H 1.09001 * 109.47244 * 65.00480 * 15 13 8 39 39 H 1.09004 * 109.47755 * 305.00361 * 15 13 8 40 40 H 0.96698 * 114.00177 * 180.02562 * 16 15 13 41 41 H 0.96997 * 120.00020 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2970 2.3821 -0.0006 5 6 1.9648 3.5933 0.0043 6 6 3.3641 3.6109 -0.0005 7 7 4.0327 4.8285 0.0000 8 6 3.2731 6.0812 -0.0006 9 1 2.3430 5.9592 0.5543 10 6 2.9795 6.5300 -1.4440 11 7 3.5991 7.8617 -1.6190 12 6 4.7100 7.9237 -0.6351 13 6 4.1182 7.2213 0.6126 14 1 3.4883 7.9054 1.1813 15 6 5.2326 6.6549 1.4948 16 8 5.9223 7.7281 2.1388 17 7 4.0577 2.4894 0.0000 18 6 3.4544 1.2949 0.0001 19 6 4.2291 0.1177 0.0001 20 1 3.7497 -0.8442 0.1044 21 6 5.6207 0.1956 -0.1352 22 7 6.2132 1.3615 -0.1382 23 14 6.6306 -1.3658 -0.3115 24 1 6.8614 -1.6461 -1.7515 25 1 7.9363 -1.1910 0.3741 26 1 5.8973 -2.5018 0.3026 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2175 2.3479 -0.0005 31 1 1.4098 4.5197 0.0080 32 1 5.0025 4.8492 0.0007 33 1 3.4155 5.8221 -2.1491 34 1 1.9029 6.5981 -1.6000 35 1 2.9282 8.5970 -1.4538 36 1 4.9661 8.9588 -0.4087 37 1 5.5814 7.3826 -1.0040 38 1 5.9328 6.0911 0.8784 39 1 4.8005 5.9966 2.2485 40 1 6.6441 7.4421 2.7152 41 1 7.1771 1.4154 -0.2322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170777965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:42 Heat of formation + Delta-G solvation = -31.065350 kcal Electronic energy + Delta-G solvation = -23995.811082 eV Core-core repulsion = 20490.456205 eV Total energy + Delta-G solvation = -3505.354877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.57062 -38.59932 -36.73624 -36.27307 -34.20323 -32.94030 -30.58984 -30.32393 -29.00494 -27.21305 -26.30494 -25.05116 -24.69365 -21.76804 -21.50010 -20.86404 -19.26616 -17.80155 -17.40088 -16.57379 -16.46516 -16.05042 -15.38528 -15.07067 -14.68446 -14.63113 -14.51403 -14.18833 -13.38979 -13.21950 -12.96537 -12.77127 -12.49543 -12.35329 -11.97860 -11.65794 -11.61119 -11.39998 -11.21856 -11.17522 -10.81578 -10.80788 -10.54637 -10.45014 -10.41881 -9.90023 -9.80645 -9.47159 -8.74346 -8.35159 -8.02490 -7.68867 -6.41022 -6.31128 -4.37038 2.80383 3.10822 3.11865 3.16499 3.25811 3.92424 3.98542 4.18805 4.40275 4.60906 4.71155 4.80517 4.99106 5.09385 5.38788 5.46114 5.53108 5.64481 5.78165 5.79570 5.80048 5.87131 5.94615 5.95776 5.99782 6.09289 6.17690 6.31634 6.40797 6.67495 6.74961 6.78166 7.18942 7.27466 7.38879 7.47805 7.60925 7.68034 8.17987 8.27236 8.41957 8.64640 8.78086 9.15781 10.15347 10.33168 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013749 B = 0.005188 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.080803 B = 5395.886175 C = 6794.737286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.312 6.312 3 C -0.075 4.075 4 C -0.114 4.114 5 C -0.346 4.346 6 C 0.393 3.607 7 N -0.729 5.729 8 C 0.145 3.855 9 H 0.085 0.915 10 C 0.026 3.974 11 N -0.675 5.675 12 C 0.054 3.946 13 C -0.131 4.131 14 H 0.087 0.913 15 C 0.091 3.909 16 O -0.579 6.579 17 N -0.513 5.513 18 C 0.289 3.711 19 C -0.412 4.412 20 H 0.091 0.909 21 C 0.068 3.932 22 N -0.714 5.714 23 Si 0.908 3.092 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.260 1.260 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.395 0.605 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.332 0.668 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.379 0.621 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 8.394 1.604 8.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.123 4.123 4 C -0.138 4.138 5 C -0.373 4.373 6 C 0.156 3.844 7 N -0.367 5.367 8 C 0.036 3.964 9 H 0.103 0.897 10 C -0.105 4.105 11 N -0.301 5.301 12 C -0.076 4.076 13 C -0.152 4.152 14 H 0.105 0.895 15 C 0.012 3.988 16 O -0.384 6.384 17 N -0.235 5.235 18 C 0.161 3.839 19 C -0.445 4.445 20 H 0.109 0.891 21 C -0.157 4.157 22 N -0.336 5.336 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.184 1.184 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.232 0.768 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.226 0.774 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.709 8.622 0.635 8.813 hybrid contribution -0.630 -0.705 1.077 1.433 sum -2.339 7.918 1.712 8.431 Atomic orbital electron populations 1.22683 0.82185 1.01513 0.99632 1.85923 1.17840 1.27908 1.90885 1.20038 0.93439 0.83113 1.15712 1.20669 0.97259 0.92381 1.03517 1.20344 0.92823 0.96224 1.27864 1.18470 0.87708 0.86638 0.91622 1.44178 1.07638 1.00976 1.83937 1.21871 0.95086 0.83791 0.95678 0.89704 1.23436 0.98939 0.91134 0.96991 1.62756 1.12169 1.04220 1.50932 1.23129 0.95243 1.00587 0.88607 1.22933 0.97177 0.97911 0.97189 0.89462 1.22010 0.93420 0.88245 0.95081 1.86397 1.51398 1.35275 1.65349 1.68369 1.34776 0.94956 1.25448 1.17758 0.85021 0.91019 0.90114 1.19539 0.90931 0.93280 1.40703 0.89098 1.26073 0.98631 0.97168 0.93787 1.70162 1.10048 1.24652 1.28781 0.86306 0.79014 0.82293 0.79181 1.19531 1.20277 1.18417 0.94535 0.94485 0.90181 0.88322 0.89060 0.76782 0.89461 0.91462 0.85276 0.90615 0.90126 0.92913 0.92901 0.77406 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.83 101.05 0.99 1.62 16 2 O -0.31 -7.28 9.62 -18.55 -0.18 -7.46 16 3 C -0.08 -1.90 6.74 -38.10 -0.26 -2.16 16 4 C -0.11 -2.59 9.12 -39.21 -0.36 -2.95 16 5 C -0.35 -7.72 9.24 -38.92 -0.36 -8.08 16 6 C 0.39 9.21 7.65 -155.26 -1.19 8.02 16 7 N -0.73 -13.83 4.57 -52.55 -0.24 -14.07 16 8 C 0.15 2.20 2.90 -66.58 -0.19 2.01 16 9 H 0.09 1.32 6.35 -51.93 -0.33 0.99 16 10 C 0.03 0.38 7.32 -2.75 -0.02 0.36 16 11 N -0.67 -8.62 7.51 -110.08 -0.83 -9.45 16 12 C 0.05 0.68 6.94 -1.90 -0.01 0.67 16 13 C -0.13 -1.71 3.29 -88.76 -0.29 -2.00 16 14 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.09 1.22 5.50 37.16 0.20 1.42 16 16 O -0.58 -7.07 13.60 -35.23 -0.48 -7.55 16 17 N -0.51 -13.75 7.91 -10.19 -0.08 -13.83 16 18 C 0.29 7.99 6.55 -84.85 -0.56 7.43 16 19 C -0.41 -11.21 8.92 -37.90 -0.34 -11.55 16 20 H 0.09 2.42 7.33 -52.49 -0.38 2.03 16 21 C 0.07 1.74 5.49 -17.33 -0.10 1.64 16 22 N -0.71 -18.54 11.48 55.55 0.64 -17.90 16 23 Si 0.91 18.76 29.56 -169.99 -5.03 13.73 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 27 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 28 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.96 6.43 -52.49 -0.34 1.62 16 31 H 0.09 1.80 6.16 -52.49 -0.32 1.48 16 32 H 0.40 7.61 6.68 -40.82 -0.27 7.34 16 33 H 0.09 1.51 7.93 -51.92 -0.41 1.10 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.33 3.54 8.92 -39.29 -0.35 3.19 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.11 7.94 -51.93 -0.41 0.70 16 38 H 0.05 0.74 6.45 -51.93 -0.33 0.40 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.38 3.12 9.12 45.56 0.42 3.54 16 41 H 0.27 6.35 8.29 -40.82 -0.34 6.02 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -30.46 332.75 -8.44 -38.90 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -4.79 Total: 16.19 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.47 Total: -3.58 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.51 Total: -55.25 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.66 Total: -15.01 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.46 -8.44 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170777965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.835 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds