Wall clock time and date at job start Tue Mar 31 2020 03:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35613 * 117.00397 * 2 1 4 4 C 1.39162 * 120.50327 * 359.97438 * 3 2 1 5 5 C 1.38302 * 118.63143 * 179.97438 * 4 3 2 6 6 C 1.39948 * 119.59265 * 359.97438 * 5 4 3 7 7 N 1.38908 * 119.49344 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99881 * 0.02562 * 7 6 5 9 9 H 1.08995 * 110.37136 * 324.26635 * 8 7 6 10 10 C 1.54380 * 110.32286 * 86.45491 * 8 7 6 11 11 N 1.48566 * 104.59262 * 142.74495 * 10 8 7 12 12 C 1.48556 * 104.22488 * 320.51764 * 11 10 8 13 13 C 1.54264 * 110.32021 * 202.09116 * 8 7 6 14 14 H 1.08995 * 110.32483 * 122.21234 * 13 8 7 15 15 C 1.52995 * 110.41156 * 0.04319 * 13 8 7 16 16 O 1.42907 * 109.47087 * 177.85849 * 15 13 8 17 17 N 1.31862 * 121.00835 * 0.26772 * 6 5 4 18 18 C 1.33827 * 121.47387 * 359.46676 * 17 6 5 19 19 C 1.40912 * 119.84931 * 180.24725 * 18 17 6 20 20 H 1.08004 * 119.99581 * 180.27926 * 19 18 17 21 21 C 1.40026 * 120.00217 * 0.27445 * 19 18 17 22 22 N 1.30780 * 119.99717 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99873 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47217 * 60.00473 * 23 21 19 25 25 H 1.48506 * 109.47112 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47314 * 300.00072 * 23 21 19 27 27 H 1.09004 * 109.46645 * 59.99756 * 1 2 3 28 28 H 1.08997 * 109.47244 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46980 * 300.00504 * 1 2 3 30 30 H 1.08002 * 120.68096 * 359.96035 * 4 3 2 31 31 H 1.07998 * 120.20337 * 179.97438 * 5 4 3 32 32 H 0.96997 * 119.99580 * 180.02562 * 7 6 5 33 33 H 1.08999 * 110.41013 * 23.96932 * 10 8 7 34 34 H 1.08999 * 110.40872 * 261.52319 * 10 8 7 35 35 H 1.00899 * 110.99785 * 80.07551 * 11 10 8 36 36 H 1.08997 * 110.41166 * 158.26183 * 12 11 10 37 37 H 1.09000 * 110.40826 * 280.70537 * 12 11 10 38 38 H 1.08997 * 109.47731 * 297.85859 * 15 13 8 39 39 H 1.09002 * 109.47229 * 57.86440 * 15 13 8 40 40 H 0.96703 * 113.99579 * 180.02562 * 16 15 13 41 41 H 0.96997 * 119.99607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 1.2972 2.3820 -0.0005 5 6 1.9651 3.5931 0.0000 6 6 3.3645 3.6106 0.0017 7 7 4.0332 4.8282 0.0017 8 6 3.2737 6.0809 0.0006 9 1 2.3682 5.9752 -0.5968 10 6 2.9181 6.4936 1.4450 11 7 3.0397 7.9743 1.4520 12 6 4.2389 8.2460 0.6184 13 6 4.1427 7.2337 -0.5433 14 1 3.6636 7.6937 -1.4075 15 6 5.5347 6.7214 -0.9184 16 8 6.3053 7.7934 -1.4655 17 7 4.0579 2.4890 -0.0026 18 6 3.4545 1.2945 0.0020 19 6 4.2292 0.1175 0.0024 20 1 3.7447 -0.8478 0.0016 21 6 5.6270 0.1993 0.0039 22 7 6.2136 1.3682 0.0054 23 14 6.6539 -1.3611 0.0053 24 1 6.3426 -2.1596 -1.2075 25 1 8.0956 -1.0049 0.0074 26 1 6.3399 -2.1593 1.2175 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2177 2.3479 -0.0016 31 1 1.4101 4.5196 -0.0008 32 1 5.0029 4.8488 0.0024 33 1 3.6211 6.0512 2.1508 34 1 1.8978 6.1948 1.6855 35 1 2.2185 8.4064 1.0558 36 1 4.2131 9.2665 0.2365 37 1 5.1486 8.0777 1.1948 38 1 6.0313 6.3341 -0.0289 39 1 5.4420 5.9262 -1.6582 40 1 7.2013 7.5403 -1.7266 41 1 7.1819 1.4248 0.0060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170777967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:44 Heat of formation + Delta-G solvation = -52.826813 kcal Electronic energy + Delta-G solvation = -23984.785861 eV Core-core repulsion = 20478.487336 eV Total energy + Delta-G solvation = -3506.298525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99474 -40.20585 -38.38530 -37.32331 -35.94197 -34.65225 -32.19997 -31.76214 -30.55679 -28.46794 -27.90079 -26.79075 -25.85698 -23.41397 -23.07450 -22.41326 -20.49964 -19.25017 -19.08304 -18.21961 -17.70759 -17.41140 -16.86666 -16.45360 -16.24219 -16.20531 -15.94852 -15.46573 -14.99020 -14.55654 -14.41221 -14.16141 -14.06752 -13.97469 -13.25310 -13.11106 -12.93750 -12.90363 -12.73185 -12.59208 -12.45776 -12.11523 -11.99206 -11.94579 -11.71012 -11.55344 -11.28592 -11.01747 -10.26048 -9.94652 -9.62641 -9.56971 -8.25905 -8.07044 -6.31638 1.00175 1.28247 1.41947 1.53255 1.58601 2.26330 2.47677 2.91228 3.02337 3.15784 3.33319 3.60976 3.86013 3.98911 4.05867 4.23594 4.25749 4.30964 4.40567 4.45488 4.48996 4.52154 4.64167 4.69334 4.71620 4.75918 4.88304 4.91986 5.01412 5.05632 5.16349 5.33060 5.50112 5.55164 5.75225 5.87831 6.26302 6.41917 6.42520 6.71868 6.79495 6.83841 6.97418 7.33845 8.29426 8.48815 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.005207 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.915210 B = 5376.221966 C = 6997.741591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.339 6.339 3 C -0.099 4.099 4 C -0.112 4.112 5 C -0.340 4.340 6 C 0.376 3.624 7 N -0.725 5.725 8 C 0.140 3.860 9 H 0.084 0.916 10 C 0.033 3.967 11 N -0.666 5.666 12 C 0.059 3.941 13 C -0.123 4.123 14 H 0.095 0.905 15 C 0.092 3.908 16 O -0.580 6.580 17 N -0.542 5.542 18 C 0.253 3.747 19 C -0.451 4.451 20 H 0.082 0.918 21 C 0.027 3.973 22 N -0.747 5.747 23 Si 0.983 3.017 24 H -0.262 1.262 25 H -0.265 1.265 26 H -0.262 1.262 27 H 0.047 0.953 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.394 0.606 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.349 0.651 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.397 0.603 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 9.376 -1.065 9.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.366 4.366 6 C 0.138 3.862 7 N -0.363 5.363 8 C 0.032 3.968 9 H 0.102 0.898 10 C -0.098 4.098 11 N -0.294 5.294 12 C -0.071 4.071 13 C -0.144 4.144 14 H 0.113 0.887 15 C 0.013 3.987 16 O -0.388 6.388 17 N -0.266 5.266 18 C 0.125 3.875 19 C -0.483 4.483 20 H 0.100 0.900 21 C -0.195 4.195 22 N -0.370 5.370 23 Si 0.804 3.196 24 H -0.186 1.186 25 H -0.190 1.190 26 H -0.187 1.187 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.231 0.769 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.165 0.835 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.246 0.754 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.283 9.894 -0.257 10.157 hybrid contribution -0.206 -1.211 -1.050 1.617 sum -2.490 8.683 -1.308 9.127 Atomic orbital electron populations 1.23017 0.79122 1.03965 1.00551 1.85851 1.21040 1.27389 1.91035 1.20088 0.93237 0.84573 1.16790 1.21041 0.98860 0.91679 1.02081 1.20701 0.92599 0.97377 1.25963 1.18880 0.88722 0.87234 0.91403 1.44378 1.07795 1.00976 1.83154 1.22233 0.94802 0.82548 0.97253 0.89783 1.23443 1.02086 0.88603 0.95699 1.63279 1.07033 1.07130 1.51915 1.22956 0.94483 0.98747 0.90866 1.22653 0.94954 0.96278 1.00498 0.88697 1.21903 0.91376 0.88694 0.96710 1.86363 1.30799 1.37260 1.84407 1.68303 1.36115 0.95727 1.26410 1.18177 0.86732 0.91619 0.91015 1.19693 0.91927 0.92973 1.43742 0.89954 1.26885 0.99207 1.00625 0.92795 1.70226 1.10785 1.26505 1.29463 0.85253 0.76844 0.77650 0.79857 1.18639 1.18963 1.18688 0.93455 0.87158 0.93430 0.85143 0.86163 0.76878 0.91902 0.90088 0.83482 0.88861 0.91098 0.93692 0.94324 0.75357 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.83 113.37 1.11 2.06 16 2 O -0.34 -15.94 9.61 -89.24 -0.86 -16.79 16 3 C -0.10 -5.09 6.74 23.23 0.16 -4.94 16 4 C -0.11 -5.01 9.12 22.51 0.21 -4.80 16 5 C -0.34 -14.85 9.24 22.70 0.21 -14.64 16 6 C 0.38 17.84 7.65 133.45 1.02 18.86 16 7 N -0.72 -27.66 4.73 -320.08 -1.51 -29.18 16 8 C 0.14 4.07 2.97 45.89 0.14 4.20 16 9 H 0.08 2.45 6.53 -2.39 -0.02 2.43 16 10 C 0.03 0.92 7.18 86.45 0.62 1.54 16 11 N -0.67 -15.11 7.62 -500.84 -3.82 -18.93 16 12 C 0.06 1.32 6.85 86.45 0.59 1.91 16 13 C -0.12 -3.02 3.34 -9.90 -0.03 -3.05 16 14 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.09 2.38 4.98 71.98 0.36 2.74 16 16 O -0.58 -13.19 13.49 -148.98 -2.01 -15.20 16 17 N -0.54 -30.07 7.88 -186.17 -1.47 -31.53 16 18 C 0.25 14.51 6.56 40.23 0.26 14.77 16 19 C -0.45 -25.58 8.94 23.36 0.21 -25.37 16 20 H 0.08 4.59 7.31 -2.91 -0.02 4.56 16 21 C 0.03 1.39 5.50 85.28 0.47 1.86 16 22 N -0.75 -39.90 11.45 21.84 0.25 -39.65 16 23 Si 0.98 39.20 29.56 68.60 2.03 41.23 16 24 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 25 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 26 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 27 H 0.05 1.44 7.69 -2.39 -0.02 1.42 16 28 H 0.11 2.88 8.14 -2.39 -0.02 2.87 16 29 H 0.05 1.44 7.69 -2.39 -0.02 1.43 16 30 H 0.13 4.86 6.43 -2.91 -0.02 4.84 16 31 H 0.12 4.45 6.23 -2.91 -0.02 4.43 16 32 H 0.39 15.36 5.95 -92.71 -0.55 14.80 16 33 H 0.06 2.05 8.06 -2.39 -0.02 2.03 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.35 6.34 8.92 -89.69 -0.80 5.54 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.73 7.80 -2.39 -0.02 1.71 16 38 H 0.04 1.22 7.05 -2.39 -0.02 1.20 16 39 H 0.04 1.15 7.60 -2.39 -0.02 1.13 16 40 H 0.40 5.89 9.12 -74.06 -0.68 5.21 16 41 H 0.28 13.33 8.29 -92.71 -0.77 12.56 16 Total: -1.00 -67.90 331.79 -3.00 -70.90 By element: Atomic # 1 Polarization: 44.96 SS G_CDS: -0.94 Total: 44.03 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 5.32 Total: -4.86 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -6.55 Total: -119.29 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -2.87 Total: -32.00 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -67.90 -3.00 -70.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170777967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.071 kcal (2) G-P(sol) polarization free energy of solvation -67.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds