Wall clock time and date at job start Tue Mar 31 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.46926 * 2 1 4 4 C 1.34223 * 116.99853 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00307 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99927 * 180.02562 * 4 3 2 7 7 N 1.46505 * 109.46779 * 180.02562 * 6 4 3 8 8 C 1.46494 * 120.00074 * 269.99946 * 7 6 4 9 9 C 1.53006 * 109.47235 * 270.00296 * 8 7 6 10 10 N 1.46896 * 109.46893 * 180.02562 * 9 8 7 11 11 C 1.38379 * 119.99770 * 90.00682 * 7 6 4 12 12 C 1.39710 * 119.43036 * 4.99308 * 11 7 6 13 13 C 1.36556 * 119.49149 * 179.97438 * 12 11 7 14 14 C 1.41325 * 118.40806 * 0.02562 * 13 12 11 15 15 C 1.41210 * 120.56862 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99445 * 203.65012 * 15 14 13 17 17 C 1.39867 * 119.99701 * 23.64078 * 15 14 13 18 18 N 1.30893 * 120.00488 * 17.65094 * 17 15 14 19 19 Si 1.86807 * 119.99913 * 197.64300 * 17 15 14 20 20 H 1.48504 * 109.46784 * 90.00295 * 19 17 15 21 21 H 1.48494 * 109.47369 * 210.00641 * 19 17 15 22 22 H 1.48503 * 109.46668 * 330.00940 * 19 17 15 23 23 C 1.40745 * 118.86029 * 359.97438 * 14 13 12 24 24 N 1.31485 * 120.36889 * 0.03032 * 23 14 13 25 25 H 1.09001 * 109.47520 * 299.99396 * 1 2 3 26 26 H 1.09004 * 109.47859 * 59.99704 * 1 2 3 27 27 H 1.09007 * 109.47543 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46824 * 240.00359 * 2 1 3 29 29 H 1.09000 * 109.47270 * 120.00737 * 2 1 3 30 30 H 1.08996 * 109.47110 * 60.00816 * 6 4 3 31 31 H 1.08994 * 109.46933 * 300.00074 * 6 4 3 32 32 H 1.09002 * 109.47406 * 30.00517 * 8 7 6 33 33 H 1.09003 * 109.47402 * 150.00612 * 8 7 6 34 34 H 1.09002 * 109.47105 * 300.00406 * 9 8 7 35 35 H 1.08994 * 109.46866 * 60.00108 * 9 8 7 36 36 H 1.00904 * 110.99851 * 180.02562 * 10 9 8 37 37 H 1.00904 * 110.99985 * 303.94892 * 10 9 8 38 38 H 1.08003 * 120.25225 * 0.25482 * 12 11 7 39 39 H 1.08002 * 120.79395 * 180.02562 * 13 12 11 40 40 H 0.97000 * 120.00453 * 179.97438 * 18 17 15 41 41 H 1.08002 * 119.81793 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 7 5.3836 2.8608 0.0010 8 6 6.1151 2.8218 1.2697 9 6 6.4453 4.2488 1.7120 10 7 7.1794 4.2097 2.9838 11 6 6.0744 2.8252 -1.1974 12 6 5.3743 2.9687 -2.3979 13 6 6.0549 2.9343 -3.5813 14 6 7.4559 2.7525 -3.5461 15 6 8.2048 2.7095 -4.7425 16 1 9.1614 2.2086 -4.7630 17 6 7.7074 3.3152 -5.9010 18 7 6.7472 4.2007 -5.8160 19 14 8.4137 2.8607 -7.5696 20 1 7.6496 1.7205 -8.1365 21 1 8.3141 4.0268 -8.4836 22 1 9.8390 2.4733 -7.4148 23 6 8.0920 2.6152 -2.2981 24 7 7.3908 2.6553 -1.1866 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.5844 3.4693 0.8912 31 1 3.5849 3.4698 -0.8887 32 1 5.5001 2.3391 2.0291 33 1 7.0394 2.2590 1.1390 34 1 7.0604 4.7315 0.9525 35 1 5.5212 4.8117 1.8427 36 1 7.4090 5.1408 3.2977 37 1 6.6570 3.7098 3.6876 38 1 4.3036 3.1102 -2.3898 39 1 5.5349 3.0435 -4.5216 40 1 6.4026 4.6210 -6.6194 41 1 9.1620 2.4751 -2.2533 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170988467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:29 Heat of formation + Delta-G solvation = -43.527525 kcal Electronic energy + Delta-G solvation = -23484.143721 eV Core-core repulsion = 19978.248443 eV Total energy + Delta-G solvation = -3505.895278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.29336 -38.72546 -36.78567 -35.96334 -34.20719 -33.47907 -31.83044 -30.75302 -29.61887 -28.69240 -26.51721 -24.42722 -23.20432 -22.29128 -21.42398 -21.02417 -19.82517 -17.59600 -17.28324 -16.94244 -16.45872 -16.14812 -15.69756 -15.28742 -14.96764 -14.35825 -14.12057 -13.90256 -13.75658 -13.39727 -13.02481 -12.96134 -12.78814 -12.50010 -12.04853 -11.92426 -11.68543 -11.63939 -11.59448 -11.40699 -11.19376 -11.08960 -10.70386 -10.57836 -10.48108 -10.31790 -9.78458 -9.38511 -8.74716 -8.53175 -8.25111 -7.99850 -6.87902 -6.63265 -4.21878 2.46643 2.59385 2.81836 2.98704 3.08817 3.12307 3.29927 3.67513 3.95088 4.66834 4.79043 4.83214 4.86091 4.97365 5.14405 5.19159 5.32792 5.39853 5.51888 5.60671 5.65941 5.73195 5.79398 5.82992 6.03287 6.19952 6.40066 6.49999 6.59108 6.68011 6.83308 7.13030 7.20789 7.29787 7.39094 7.48562 7.53822 7.89031 7.99767 8.11722 8.30541 8.56773 8.82059 8.85818 9.69461 10.20323 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.004547 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.451616 B = 6156.600589 C = 7872.849270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.367 6.367 4 C 0.429 3.571 5 O -0.489 6.489 6 C 0.149 3.851 7 N -0.598 5.598 8 C 0.147 3.853 9 C 0.048 3.952 10 N -0.847 5.847 11 C 0.274 3.726 12 C -0.199 4.199 13 C -0.095 4.095 14 C 0.035 3.965 15 C -0.455 4.455 16 H 0.079 0.921 17 C 0.074 3.926 18 N -0.803 5.803 19 Si 0.908 3.092 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.262 1.262 23 C 0.011 3.989 24 N -0.503 5.503 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.017 0.983 36 H 0.339 0.661 37 H 0.334 0.666 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.279 0.721 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.585 -0.993 10.317 14.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.284 6.284 4 C 0.268 3.732 5 O -0.374 6.374 6 C 0.020 3.980 7 N -0.318 5.318 8 C 0.022 3.978 9 C -0.084 4.084 10 N -0.376 5.376 11 C 0.044 3.956 12 C -0.222 4.222 13 C -0.122 4.122 14 C 0.030 3.970 15 C -0.486 4.486 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.430 5.430 19 Si 0.733 3.267 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.148 4.148 24 N -0.217 5.217 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.035 0.965 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.113 0.887 39 H 0.146 0.854 40 H 0.090 0.910 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.531 -1.645 10.601 14.350 hybrid contribution -1.074 0.271 -1.309 1.715 sum -10.605 -1.374 9.292 14.167 Atomic orbital electron populations 1.21790 0.92915 1.02696 1.03365 1.22935 0.95049 0.80983 1.02405 1.86519 1.25412 1.31899 1.84605 1.25417 0.80166 0.94776 0.72859 1.90680 1.60228 1.42876 1.43594 1.20704 0.82242 0.89436 1.05586 1.45076 1.00940 1.82285 1.03456 1.20974 0.97731 0.95030 0.84039 1.22257 0.95734 0.98630 0.91799 1.58584 1.50722 1.22312 1.05963 1.17535 0.88935 1.05202 0.83920 1.20794 0.98369 1.10133 0.92905 1.21268 0.94249 1.00174 0.96507 1.18387 0.92356 0.92720 0.93537 1.19373 1.05047 1.30956 0.93195 0.90276 1.25861 0.94297 0.92788 1.01254 1.69812 1.23245 1.18846 1.31054 0.86305 0.80467 0.78876 0.81029 1.19413 1.20418 1.18597 1.22218 0.97485 1.08223 0.86837 1.66496 1.05806 1.16542 1.32839 0.91667 0.91468 0.90540 0.91393 0.91651 0.87622 0.86648 0.93309 0.88850 0.90268 0.96458 0.84882 0.85442 0.88742 0.85437 0.90974 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 37.16 0.38 -0.86 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.37 -5.09 10.22 -39.24 -0.40 -5.49 16 4 C 0.43 6.97 8.03 36.01 0.29 7.26 16 5 O -0.49 -9.85 16.18 -18.75 -0.30 -10.16 16 6 C 0.15 2.19 5.83 -5.19 -0.03 2.16 16 7 N -0.60 -11.07 2.06 -175.13 -0.36 -11.43 16 8 C 0.15 2.46 5.72 -4.04 -0.02 2.44 16 9 C 0.05 0.70 7.11 -3.82 -0.03 0.68 16 10 N -0.85 -10.45 9.62 -10.37 -0.10 -10.55 16 11 C 0.27 6.27 7.37 -155.12 -1.14 5.13 16 12 C -0.20 -4.62 9.19 -39.64 -0.36 -4.99 16 13 C -0.10 -2.46 8.75 -39.02 -0.34 -2.80 16 14 C 0.03 0.93 5.59 -106.65 -0.60 0.33 16 15 C -0.45 -11.98 9.07 -37.84 -0.34 -12.32 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 17 C 0.07 1.85 5.17 -17.34 -0.09 1.76 16 18 N -0.80 -20.49 10.92 55.54 0.61 -19.88 16 19 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 C 0.01 0.28 10.97 -16.75 -0.18 0.10 16 24 N -0.50 -12.39 9.02 -11.79 -0.11 -12.50 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.11 1.17 8.07 -51.93 -0.42 0.75 16 31 H 0.12 1.63 5.93 -51.93 -0.31 1.32 16 32 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 33 H 0.09 1.86 7.27 -51.93 -0.38 1.48 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.34 3.51 9.08 -39.29 -0.36 3.15 16 37 H 0.33 3.43 8.99 -39.29 -0.35 3.08 16 38 H 0.09 1.92 5.97 -52.48 -0.31 1.61 16 39 H 0.13 3.35 6.19 -52.49 -0.32 3.03 16 40 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 41 H 0.13 3.04 8.06 -52.49 -0.42 2.62 16 LS Contribution 349.02 15.07 5.26 5.26 Total: -1.00 -31.11 349.02 -8.48 -39.59 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.80 Total: 11.71 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.24 Total: -0.18 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.04 Total: -54.36 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.70 Total: -15.65 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.11 -8.48 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170988467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.933 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds