Wall clock time and date at job start Tue Mar 31 2020 03:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.46926 * 2 1 4 4 C 1.34223 * 116.99853 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00307 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99927 * 180.02562 * 4 3 2 7 7 N 1.46505 * 109.46779 * 180.02562 * 6 4 3 8 8 C 1.46494 * 120.00074 * 269.99946 * 7 6 4 9 9 C 1.53006 * 109.47235 * 270.00296 * 8 7 6 10 10 N 1.46896 * 109.46893 * 180.02562 * 9 8 7 11 11 C 1.38379 * 119.99770 * 90.00682 * 7 6 4 12 12 C 1.39710 * 119.43036 * 4.99308 * 11 7 6 13 13 C 1.36556 * 119.49149 * 179.97438 * 12 11 7 14 14 C 1.41325 * 118.40806 * 0.02562 * 13 12 11 15 15 C 1.41210 * 120.56862 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99445 * 203.65012 * 15 14 13 17 17 C 1.39867 * 119.99701 * 23.64078 * 15 14 13 18 18 N 1.30893 * 120.00488 * 17.65094 * 17 15 14 19 19 Si 1.86807 * 119.99913 * 197.64300 * 17 15 14 20 20 H 1.48504 * 109.46784 * 90.00295 * 19 17 15 21 21 H 1.48494 * 109.47369 * 210.00641 * 19 17 15 22 22 H 1.48503 * 109.46668 * 330.00940 * 19 17 15 23 23 C 1.40745 * 118.86029 * 359.97438 * 14 13 12 24 24 N 1.31485 * 120.36889 * 0.03032 * 23 14 13 25 25 H 1.09001 * 109.47520 * 299.99396 * 1 2 3 26 26 H 1.09004 * 109.47859 * 59.99704 * 1 2 3 27 27 H 1.09007 * 109.47543 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46824 * 240.00359 * 2 1 3 29 29 H 1.09000 * 109.47270 * 120.00737 * 2 1 3 30 30 H 1.08996 * 109.47110 * 60.00816 * 6 4 3 31 31 H 1.08994 * 109.46933 * 300.00074 * 6 4 3 32 32 H 1.09002 * 109.47406 * 30.00517 * 8 7 6 33 33 H 1.09003 * 109.47402 * 150.00612 * 8 7 6 34 34 H 1.09002 * 109.47105 * 300.00406 * 9 8 7 35 35 H 1.08994 * 109.46866 * 60.00108 * 9 8 7 36 36 H 1.00904 * 110.99851 * 180.02562 * 10 9 8 37 37 H 1.00904 * 110.99985 * 303.94892 * 10 9 8 38 38 H 1.08003 * 120.25225 * 0.25482 * 12 11 7 39 39 H 1.08002 * 120.79395 * 180.02562 * 13 12 11 40 40 H 0.97000 * 120.00453 * 179.97438 * 18 17 15 41 41 H 1.08002 * 119.81793 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 7 5.3836 2.8608 0.0010 8 6 6.1151 2.8218 1.2697 9 6 6.4453 4.2488 1.7120 10 7 7.1794 4.2097 2.9838 11 6 6.0744 2.8252 -1.1974 12 6 5.3743 2.9687 -2.3979 13 6 6.0549 2.9343 -3.5813 14 6 7.4559 2.7525 -3.5461 15 6 8.2048 2.7095 -4.7425 16 1 9.1614 2.2086 -4.7630 17 6 7.7074 3.3152 -5.9010 18 7 6.7472 4.2007 -5.8160 19 14 8.4137 2.8607 -7.5696 20 1 7.6496 1.7205 -8.1365 21 1 8.3141 4.0268 -8.4836 22 1 9.8390 2.4733 -7.4148 23 6 8.0920 2.6152 -2.2981 24 7 7.3908 2.6553 -1.1866 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.5844 3.4693 0.8912 31 1 3.5849 3.4698 -0.8887 32 1 5.5001 2.3391 2.0291 33 1 7.0394 2.2590 1.1390 34 1 7.0604 4.7315 0.9525 35 1 5.5212 4.8117 1.8427 36 1 7.4090 5.1408 3.2977 37 1 6.6570 3.7098 3.6876 38 1 4.3036 3.1102 -2.3898 39 1 5.5349 3.0435 -4.5216 40 1 6.4026 4.6210 -6.6194 41 1 9.1620 2.4751 -2.2533 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170988467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:28 Heat of formation + Delta-G solvation = -63.086477 kcal Electronic energy + Delta-G solvation = -23484.991861 eV Core-core repulsion = 19978.248443 eV Total energy + Delta-G solvation = -3506.743418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.59207 -40.44950 -38.20166 -37.31274 -35.78754 -34.99182 -32.78889 -32.54444 -31.41779 -29.96166 -28.12099 -26.02989 -24.27348 -23.86110 -23.03411 -22.42876 -21.34225 -19.21248 -18.81826 -18.42619 -17.76235 -17.45267 -16.97050 -16.90356 -16.37292 -15.67504 -15.66312 -15.35025 -15.14704 -14.78576 -14.47871 -14.17517 -14.07893 -13.67552 -13.61303 -13.51316 -13.23168 -13.05496 -12.87063 -12.80606 -12.66344 -12.50351 -12.25383 -12.05224 -11.70118 -11.63862 -11.52143 -11.19052 -10.40074 -10.18745 -9.90561 -9.57432 -8.70695 -8.42562 -6.16703 0.83823 1.09337 1.20569 1.40641 1.48529 1.53196 1.65536 2.22842 2.30070 2.79974 3.71676 3.73150 3.85067 3.96555 3.99899 4.04244 4.10232 4.22800 4.29593 4.34113 4.41511 4.53263 4.58893 4.68507 4.84696 4.89492 4.92729 5.05551 5.14493 5.18674 5.25208 5.38706 5.46772 5.52035 5.82370 5.94691 6.22516 6.33950 6.44205 6.65408 6.70571 6.81230 6.89421 6.95842 7.80239 8.36463 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.004547 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.451616 B = 6156.600589 C = 7872.849270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.435 3.565 5 O -0.536 6.536 6 C 0.143 3.857 7 N -0.599 5.599 8 C 0.148 3.852 9 C 0.062 3.938 10 N -0.854 5.854 11 C 0.283 3.717 12 C -0.203 4.203 13 C -0.110 4.110 14 C 0.005 3.995 15 C -0.491 4.491 16 H 0.076 0.924 17 C 0.037 3.963 18 N -0.831 5.831 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.007 4.007 24 N -0.518 5.518 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.155 0.845 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.352 0.648 37 H 0.349 0.651 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.288 0.712 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.593 -0.551 11.213 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.276 3.724 5 O -0.424 6.424 6 C 0.016 3.984 7 N -0.318 5.318 8 C 0.024 3.976 9 C -0.070 4.070 10 N -0.386 5.386 11 C 0.051 3.949 12 C -0.226 4.226 13 C -0.137 4.137 14 C 0.000 4.000 15 C -0.522 4.522 16 H 0.094 0.906 17 C -0.177 4.177 18 N -0.458 5.458 19 Si 0.803 3.197 20 H -0.189 1.189 21 H -0.192 1.192 22 H -0.184 1.184 23 C -0.164 4.164 24 N -0.233 5.233 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.172 0.828 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.579 -1.187 11.548 16.396 hybrid contribution -0.591 0.111 -1.399 1.523 sum -12.169 -1.075 10.148 15.882 Atomic orbital electron populations 1.21803 0.89912 1.04292 1.03924 1.23228 0.97355 0.79755 1.01873 1.86513 1.23942 1.33251 1.83857 1.25574 0.80620 0.94674 0.71518 1.90679 1.61368 1.44368 1.46002 1.21117 0.79769 0.89077 1.08424 1.45268 1.02594 1.81444 1.02466 1.21004 0.96543 0.96232 0.83802 1.21949 0.96296 0.96869 0.91890 1.58465 1.50884 1.23635 1.05629 1.17904 0.88610 1.02717 0.85718 1.21054 0.99866 1.09417 0.92289 1.21293 0.94192 1.01082 0.97099 1.18661 0.93141 0.93979 0.94170 1.19590 1.05614 1.32605 0.94383 0.90574 1.26659 0.94534 0.92061 1.04484 1.69849 1.24174 1.19322 1.32473 0.85207 0.79607 0.78792 0.76125 1.18944 1.19211 1.18373 1.22344 0.97974 1.08995 0.87093 1.66574 1.06874 1.17448 1.32401 0.90588 0.91369 0.88453 0.92769 0.91515 0.82754 0.85634 0.90746 0.92544 0.93835 0.93820 0.83384 0.83745 0.85785 0.86456 0.90152 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 10.29 71.98 0.74 -1.23 16 2 C 0.05 1.13 6.19 71.98 0.45 1.58 16 3 O -0.36 -9.14 10.22 -51.35 -0.52 -9.66 16 4 C 0.43 13.29 8.03 71.24 0.57 13.86 16 5 O -0.54 -21.27 16.18 21.96 0.36 -20.91 16 6 C 0.14 3.79 5.83 85.63 0.50 4.29 16 7 N -0.60 -21.33 2.06 -707.98 -1.46 -22.79 16 8 C 0.15 4.76 5.72 86.38 0.49 5.26 16 9 C 0.06 1.72 7.11 86.31 0.61 2.33 16 10 N -0.85 -19.37 9.62 -186.72 -1.80 -21.16 16 11 C 0.28 12.98 7.37 133.32 0.98 13.96 16 12 C -0.20 -9.46 9.19 22.23 0.20 -9.26 16 13 C -0.11 -5.82 8.75 22.64 0.20 -5.62 16 14 C 0.01 0.30 5.59 -21.18 -0.12 0.18 16 15 C -0.49 -26.87 9.07 23.39 0.21 -26.66 16 16 H 0.08 4.03 7.90 -2.91 -0.02 4.01 16 17 C 0.04 1.85 5.17 85.23 0.44 2.29 16 18 N -0.83 -43.10 10.92 21.82 0.24 -42.86 16 19 Si 0.98 38.55 29.59 68.60 2.03 40.58 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 C -0.01 -0.35 10.97 85.36 0.94 0.58 16 24 N -0.52 -26.26 9.02 -191.21 -1.72 -27.98 16 25 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 29 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 30 H 0.16 2.64 8.07 -2.39 -0.02 2.62 16 31 H 0.13 3.14 5.93 -2.39 -0.01 3.13 16 32 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 33 H 0.06 2.26 7.27 -2.39 -0.02 2.24 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.35 6.53 9.08 -89.69 -0.81 5.72 16 37 H 0.35 6.22 8.99 -89.69 -0.81 5.41 16 38 H 0.12 4.89 5.97 -2.91 -0.02 4.88 16 39 H 0.12 6.36 6.19 -2.91 -0.02 6.35 16 40 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 41 H 0.13 6.62 8.06 -2.91 -0.02 6.59 16 Total: -1.00 -70.37 349.02 2.78 -67.59 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: -0.56 Total: 35.64 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 6.22 Total: 1.56 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -4.74 Total: -114.79 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.17 Total: -30.57 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -70.37 2.78 -67.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170988467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.500 kcal (2) G-P(sol) polarization free energy of solvation -70.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds