Wall clock time and date at job start Tue Mar 31 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46761 * 2 1 4 4 C 1.34224 * 116.99469 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00370 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99907 * 179.97438 * 4 3 2 7 7 N 1.46496 * 109.47356 * 179.97438 * 6 4 3 8 8 C 1.46502 * 119.99933 * 269.99981 * 7 6 4 9 9 C 1.52997 * 109.47024 * 269.99790 * 8 7 6 10 10 N 1.46906 * 109.47011 * 179.97438 * 9 8 7 11 11 C 1.38824 * 120.00348 * 89.99786 * 7 6 4 12 12 C 1.39801 * 119.57919 * 5.02726 * 11 7 6 13 13 C 1.38597 * 119.48550 * 179.97438 * 12 11 7 14 14 C 1.38382 * 118.68449 * 359.72275 * 13 12 11 15 15 C 1.40562 * 119.14952 * 0.53678 * 14 13 12 16 16 C 1.41312 * 119.78388 * 179.73014 * 15 14 13 17 17 H 1.07999 * 120.00037 * 344.71938 * 16 15 14 18 18 C 1.40030 * 119.99479 * 164.72251 * 16 15 14 19 19 N 1.30734 * 120.00203 * 336.41461 * 18 16 15 20 20 Si 1.86804 * 119.99750 * 156.14113 * 18 16 15 21 21 H 1.48491 * 109.47234 * 180.27563 * 20 18 16 22 22 H 1.48500 * 109.46791 * 300.27448 * 20 18 16 23 23 H 1.48501 * 109.46923 * 60.27152 * 20 18 16 24 24 N 1.31954 * 119.58754 * 184.99951 * 11 7 6 25 25 H 1.08996 * 109.47430 * 60.00211 * 1 2 3 26 26 H 1.08994 * 109.46763 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46872 * 300.00078 * 1 2 3 28 28 H 1.08995 * 109.46861 * 240.00033 * 2 1 3 29 29 H 1.09002 * 109.47027 * 119.99629 * 2 1 3 30 30 H 1.08999 * 109.47294 * 59.99401 * 6 4 3 31 31 H 1.09001 * 109.47285 * 300.00341 * 6 4 3 32 32 H 1.08998 * 109.47035 * 29.99822 * 8 7 6 33 33 H 1.09003 * 109.47204 * 150.00389 * 8 7 6 34 34 H 1.09001 * 109.47728 * 300.00015 * 9 8 7 35 35 H 1.09000 * 109.47341 * 60.00484 * 9 8 7 36 36 H 1.00895 * 110.99945 * 56.04872 * 10 9 8 37 37 H 1.00902 * 111.00138 * 180.02562 * 10 9 8 38 38 H 1.07991 * 120.25799 * 359.94740 * 12 11 7 39 39 H 1.08005 * 120.65661 * 179.97438 * 13 12 11 40 40 H 1.08009 * 120.43184 * 180.28316 * 14 13 12 41 41 H 0.96999 * 120.00012 * 353.63416 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3836 2.8608 -0.0010 8 6 6.1151 2.8231 1.2678 9 6 6.4452 4.2505 1.7087 10 7 7.1781 4.2127 2.9813 11 6 6.0769 2.8239 -1.2032 12 6 5.3798 2.9665 -2.4066 13 6 6.0740 2.9299 -3.6056 14 6 7.4467 2.7578 -3.5734 15 6 8.0898 2.6146 -2.3318 16 6 9.4903 2.4324 -2.2835 17 1 10.0302 2.1578 -3.1777 18 6 10.1779 2.6078 -1.0763 19 7 9.6660 3.3573 -0.1354 20 14 11.8230 1.7646 -0.8075 21 1 12.3378 2.1031 0.5435 22 1 11.6491 0.2939 -0.9168 23 1 12.7898 2.2265 -1.8358 24 7 7.3856 2.6552 -1.1957 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.5850 3.4699 0.8887 31 1 3.5844 3.4694 -0.8911 32 1 5.4999 2.3412 2.0276 33 1 7.0394 2.2601 1.1377 34 1 7.0604 4.7325 0.9489 35 1 5.5210 4.8135 1.8388 36 1 8.0068 3.6423 2.9045 37 1 7.4076 5.1441 3.2943 38 1 4.3086 3.1037 -2.4019 39 1 5.5544 3.0377 -4.5463 40 1 8.0162 2.7296 -4.4907 41 1 8.8575 3.8653 -0.3060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170994716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:35 Heat of formation + Delta-G solvation = -50.652014 kcal Electronic energy + Delta-G solvation = -24060.865701 eV Core-core repulsion = 20554.661482 eV Total energy + Delta-G solvation = -3506.204219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.29419 -38.71454 -36.76860 -35.89077 -34.13811 -33.23216 -31.85016 -30.69361 -29.40314 -28.58728 -26.07587 -24.83101 -23.30038 -22.05973 -21.46641 -20.94124 -19.74504 -18.10967 -17.58532 -16.81154 -16.18672 -16.08796 -15.43041 -15.05974 -14.49881 -14.46156 -14.13805 -14.00601 -13.63477 -13.28552 -13.23393 -12.82721 -12.77445 -12.48603 -12.06069 -11.89787 -11.75074 -11.63895 -11.52666 -11.34981 -11.07905 -10.65172 -10.51806 -10.47666 -10.37456 -10.30857 -9.87783 -9.20438 -8.87338 -8.35971 -8.17346 -7.95523 -7.04561 -6.66691 -4.56132 2.47692 2.60342 2.85896 3.06087 3.19461 3.31764 3.40181 3.63674 4.06799 4.70148 4.82664 4.83657 4.96411 5.02932 5.19245 5.25934 5.40165 5.48600 5.61139 5.65684 5.68326 5.82096 5.84572 5.98658 6.03414 6.32511 6.39385 6.49608 6.57429 6.67432 6.75379 6.87426 7.31965 7.46639 7.60545 7.67742 7.74678 7.78964 7.89221 8.03562 8.08610 8.30894 8.74247 8.91043 9.92635 10.18490 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.004864 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.328288 B = 5755.426990 C = 6525.696388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.366 6.366 4 C 0.432 3.568 5 O -0.488 6.488 6 C 0.146 3.854 7 N -0.597 5.597 8 C 0.141 3.859 9 C 0.052 3.948 10 N -0.850 5.850 11 C 0.431 3.569 12 C -0.373 4.373 13 C -0.021 4.021 14 C -0.313 4.313 15 C 0.283 3.717 16 C -0.491 4.491 17 H 0.080 0.920 18 C 0.044 3.956 19 N -0.757 5.757 20 Si 1.065 2.935 21 H -0.274 1.274 22 H -0.276 1.276 23 H -0.278 1.278 24 N -0.589 5.589 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.057 0.943 36 H 0.348 0.652 37 H 0.336 0.664 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.287 0.058 3.614 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.284 6.284 4 C 0.271 3.729 5 O -0.372 6.372 6 C 0.018 3.982 7 N -0.314 5.314 8 C 0.017 3.983 9 C -0.080 4.080 10 N -0.379 5.379 11 C 0.193 3.807 12 C -0.399 4.399 13 C -0.045 4.045 14 C -0.335 4.335 15 C 0.159 3.841 16 C -0.522 4.522 17 H 0.098 0.902 18 C -0.184 4.184 19 N -0.380 5.380 20 Si 0.889 3.111 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.204 1.204 24 N -0.312 5.312 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.162 -0.903 5.882 11.776 hybrid contribution -1.089 0.473 -2.650 2.904 sum -11.250 -0.430 3.232 11.713 Atomic orbital electron populations 1.21789 0.92881 1.02701 1.03356 1.22939 0.95047 0.80922 1.02442 1.86505 1.25281 1.31930 1.84660 1.25186 0.80230 0.94578 0.72923 1.90698 1.60207 1.42838 1.43487 1.20756 0.81978 0.89576 1.05872 1.45667 1.01518 1.80170 1.04021 1.21108 0.98118 0.95702 0.83378 1.22091 0.97582 0.98129 0.90221 1.58761 1.30468 1.17856 1.30805 1.18135 0.89662 0.89240 0.83617 1.20474 0.98099 1.29029 0.92287 1.20614 0.94021 0.94209 0.95705 1.21494 0.94262 1.19655 0.98131 1.18191 0.93061 0.86954 0.85943 1.20508 0.91189 1.41854 0.98630 0.90183 1.26874 1.04727 0.94986 0.91833 1.70164 1.20065 1.13851 1.33925 0.83651 0.73452 0.76897 0.77099 1.19906 1.20169 1.20382 1.67633 1.04373 1.28581 1.30615 0.91536 0.90523 0.91595 0.91461 0.91552 0.87137 0.86470 0.92263 0.88910 0.94506 0.92459 0.83936 0.85286 0.88995 0.88630 0.88510 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.37 -5.23 10.22 -39.24 -0.40 -5.63 16 4 C 0.43 7.33 8.03 36.01 0.29 7.62 16 5 O -0.49 -10.32 16.18 -18.75 -0.30 -10.62 16 6 C 0.15 2.27 5.84 -5.19 -0.03 2.24 16 7 N -0.60 -11.83 2.07 -175.18 -0.36 -12.19 16 8 C 0.14 2.71 5.73 -4.04 -0.02 2.69 16 9 C 0.05 0.90 7.11 -3.82 -0.03 0.87 16 10 N -0.85 -13.18 9.62 -10.37 -0.10 -13.28 16 11 C 0.43 10.28 7.38 -155.32 -1.15 9.14 16 12 C -0.37 -8.48 9.29 -38.86 -0.36 -8.84 16 13 C -0.02 -0.49 10.15 -39.40 -0.40 -0.89 16 14 C -0.31 -7.92 9.83 -38.65 -0.38 -8.30 16 15 C 0.28 7.76 6.21 -85.00 -0.53 7.23 16 16 C -0.49 -13.25 9.04 -37.74 -0.34 -13.59 16 17 H 0.08 2.07 7.95 -52.49 -0.42 1.65 16 18 C 0.04 1.12 5.28 -17.35 -0.09 1.03 16 19 N -0.76 -19.76 13.06 55.55 0.73 -19.04 16 20 Si 1.06 21.73 30.00 -169.99 -5.10 16.63 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 24 N -0.59 -15.64 6.32 -10.33 -0.07 -15.70 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.11 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.12 1.68 5.96 -51.93 -0.31 1.37 16 32 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 33 H 0.09 2.14 7.29 -51.93 -0.38 1.77 16 34 H 0.04 0.74 7.98 -51.93 -0.41 0.33 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.35 5.78 8.99 -39.29 -0.35 5.43 16 37 H 0.34 4.52 9.08 -39.29 -0.36 4.16 16 38 H 0.09 1.83 6.01 -52.49 -0.32 1.51 16 39 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 40 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 41 H 0.31 8.36 6.39 -40.82 -0.26 8.10 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -31.16 349.89 -8.58 -39.74 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -5.82 Total: 15.56 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.43 Total: -0.74 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.20 Total: -60.21 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.70 Total: -16.25 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.10 Total: 16.63 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.16 -8.58 -39.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170994716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.913 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds