Wall clock time and date at job start Tue Mar 31 2020 03:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45203 * 109.46761 * 2 1 4 4 C 1.34224 * 116.99469 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00370 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99907 * 179.97438 * 4 3 2 7 7 N 1.46496 * 109.47356 * 179.97438 * 6 4 3 8 8 C 1.46502 * 119.99933 * 269.99981 * 7 6 4 9 9 C 1.52997 * 109.47024 * 269.99790 * 8 7 6 10 10 N 1.46906 * 109.47011 * 179.97438 * 9 8 7 11 11 C 1.38824 * 120.00348 * 89.99786 * 7 6 4 12 12 C 1.39801 * 119.57919 * 5.02726 * 11 7 6 13 13 C 1.38597 * 119.48550 * 179.97438 * 12 11 7 14 14 C 1.38382 * 118.68449 * 359.72275 * 13 12 11 15 15 C 1.40562 * 119.14952 * 0.53678 * 14 13 12 16 16 C 1.41312 * 119.78388 * 179.73014 * 15 14 13 17 17 H 1.07999 * 120.00037 * 344.71938 * 16 15 14 18 18 C 1.40030 * 119.99479 * 164.72251 * 16 15 14 19 19 N 1.30734 * 120.00203 * 336.41461 * 18 16 15 20 20 Si 1.86804 * 119.99750 * 156.14113 * 18 16 15 21 21 H 1.48491 * 109.47234 * 180.27563 * 20 18 16 22 22 H 1.48500 * 109.46791 * 300.27448 * 20 18 16 23 23 H 1.48501 * 109.46923 * 60.27152 * 20 18 16 24 24 N 1.31954 * 119.58754 * 184.99951 * 11 7 6 25 25 H 1.08996 * 109.47430 * 60.00211 * 1 2 3 26 26 H 1.08994 * 109.46763 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46872 * 300.00078 * 1 2 3 28 28 H 1.08995 * 109.46861 * 240.00033 * 2 1 3 29 29 H 1.09002 * 109.47027 * 119.99629 * 2 1 3 30 30 H 1.08999 * 109.47294 * 59.99401 * 6 4 3 31 31 H 1.09001 * 109.47285 * 300.00341 * 6 4 3 32 32 H 1.08998 * 109.47035 * 29.99822 * 8 7 6 33 33 H 1.09003 * 109.47204 * 150.00389 * 8 7 6 34 34 H 1.09001 * 109.47728 * 300.00015 * 9 8 7 35 35 H 1.09000 * 109.47341 * 60.00484 * 9 8 7 36 36 H 1.00895 * 110.99945 * 56.04872 * 10 9 8 37 37 H 1.00902 * 111.00138 * 180.02562 * 10 9 8 38 38 H 1.07991 * 120.25799 * 359.94740 * 12 11 7 39 39 H 1.08005 * 120.65661 * 179.97438 * 13 12 11 40 40 H 1.08009 * 120.43184 * 180.28316 * 14 13 12 41 41 H 0.96999 * 120.00012 * 353.63416 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3836 2.8608 -0.0010 8 6 6.1151 2.8231 1.2678 9 6 6.4452 4.2505 1.7087 10 7 7.1781 4.2127 2.9813 11 6 6.0769 2.8239 -1.2032 12 6 5.3798 2.9665 -2.4066 13 6 6.0740 2.9299 -3.6056 14 6 7.4467 2.7578 -3.5734 15 6 8.0898 2.6146 -2.3318 16 6 9.4903 2.4324 -2.2835 17 1 10.0302 2.1578 -3.1777 18 6 10.1779 2.6078 -1.0763 19 7 9.6660 3.3573 -0.1354 20 14 11.8230 1.7646 -0.8075 21 1 12.3378 2.1031 0.5435 22 1 11.6491 0.2939 -0.9168 23 1 12.7898 2.2265 -1.8358 24 7 7.3856 2.6552 -1.1957 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.5850 3.4699 0.8887 31 1 3.5844 3.4694 -0.8911 32 1 5.4999 2.3412 2.0276 33 1 7.0394 2.2601 1.1377 34 1 7.0604 4.7325 0.9489 35 1 5.5210 4.8135 1.8388 36 1 8.0068 3.6423 2.9045 37 1 7.4076 5.1441 3.2943 38 1 4.3086 3.1037 -2.4019 39 1 5.5544 3.0377 -4.5463 40 1 8.0162 2.7296 -4.4907 41 1 8.8575 3.8653 -0.3060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170994716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:34 Heat of formation + Delta-G solvation = -69.866517 kcal Electronic energy + Delta-G solvation = -24061.698904 eV Core-core repulsion = 20554.661482 eV Total energy + Delta-G solvation = -3507.037422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64370 -40.45236 -38.24079 -37.34296 -35.81785 -34.84656 -32.86263 -32.41538 -31.21200 -29.99267 -27.75523 -26.56292 -24.32720 -23.70401 -23.04641 -22.46806 -21.33806 -19.93437 -18.87632 -18.27797 -17.55051 -17.43367 -17.00319 -16.52510 -16.18619 -16.12267 -15.69546 -15.33386 -15.12019 -14.88329 -14.53142 -14.23518 -14.15007 -13.74616 -13.59341 -13.50166 -13.12468 -13.05347 -12.81243 -12.73366 -12.52966 -12.32148 -12.12956 -11.97061 -11.76802 -11.66144 -11.55462 -10.99804 -10.67329 -10.07849 -9.88845 -9.68441 -8.97911 -8.43914 -6.56455 0.93155 1.08775 1.15796 1.52403 1.52953 1.68028 1.81505 2.17435 2.36385 2.82085 3.66579 3.69625 3.83524 3.94442 3.98627 4.03925 4.08412 4.18182 4.30896 4.31756 4.33619 4.56682 4.62952 4.73511 4.78434 4.84756 4.86332 4.91255 5.02196 5.12405 5.18567 5.42645 5.54159 5.73158 5.77215 5.86610 5.99280 6.09928 6.26667 6.45783 6.53270 6.75500 6.83266 6.98846 8.02147 8.17814 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.004864 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.328288 B = 5755.426990 C = 6525.696388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.356 6.356 4 C 0.438 3.562 5 O -0.538 6.538 6 C 0.140 3.860 7 N -0.596 5.596 8 C 0.148 3.852 9 C 0.068 3.932 10 N -0.841 5.841 11 C 0.414 3.586 12 C -0.370 4.370 13 C -0.019 4.019 14 C -0.345 4.345 15 C 0.254 3.746 16 C -0.530 4.530 17 H 0.078 0.922 18 C 0.007 3.993 19 N -0.770 5.770 20 Si 1.118 2.882 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.257 1.257 24 N -0.611 5.611 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.154 0.846 31 H 0.137 0.863 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.002 0.998 35 H 0.085 0.915 36 H 0.341 0.659 37 H 0.350 0.650 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.497 0.501 4.241 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.273 6.273 4 C 0.280 3.720 5 O -0.427 6.427 6 C 0.015 3.985 7 N -0.312 5.312 8 C 0.024 3.976 9 C -0.065 4.065 10 N -0.371 5.371 11 C 0.176 3.824 12 C -0.395 4.395 13 C -0.043 4.043 14 C -0.367 4.367 15 C 0.129 3.871 16 C -0.561 4.561 17 H 0.096 0.904 18 C -0.216 4.216 19 N -0.391 5.391 20 Si 0.936 3.064 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.181 1.181 24 N -0.335 5.335 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.172 0.828 31 H 0.154 0.846 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.104 0.896 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.118 0.882 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.448 -0.421 6.522 14.059 hybrid contribution -0.659 0.320 -2.840 2.933 sum -13.107 -0.101 3.682 13.614 Atomic orbital electron populations 1.21802 0.89666 1.04344 1.04011 1.23247 0.97491 0.79647 1.01835 1.86503 1.23600 1.33319 1.83835 1.25369 0.80748 0.94436 0.71487 1.90697 1.61469 1.44438 1.46080 1.21188 0.79180 0.89300 1.08862 1.45814 1.03283 1.79325 1.02791 1.20983 0.96473 0.96504 0.83591 1.21901 0.98220 0.96583 0.89789 1.58773 1.30047 1.18721 1.29537 1.18604 0.89367 0.88744 0.85705 1.20909 0.99779 1.27119 0.91718 1.21040 0.93262 0.92474 0.97564 1.21644 0.95745 1.21708 0.97643 1.18608 0.93857 0.87435 0.87173 1.20758 0.91795 1.44067 0.99505 0.90421 1.28260 1.07523 0.94648 0.91180 1.70249 1.19869 1.14824 1.34203 0.82993 0.69904 0.75749 0.77791 1.19231 1.20118 1.18129 1.67631 1.05919 1.29318 1.30630 0.91066 0.88410 0.90696 0.92562 0.91870 0.82822 0.84582 0.90781 0.93461 0.97999 0.89638 0.84765 0.83731 0.85627 0.84950 0.88236 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 10.29 71.98 0.74 -1.22 16 2 C 0.05 1.16 6.19 71.98 0.45 1.60 16 3 O -0.36 -9.28 10.22 -51.36 -0.52 -9.80 16 4 C 0.44 14.03 8.03 71.24 0.57 14.60 16 5 O -0.54 -22.60 16.18 21.97 0.36 -22.25 16 6 C 0.14 3.95 5.84 85.63 0.50 4.44 16 7 N -0.60 -23.07 2.07 -708.13 -1.47 -24.54 16 8 C 0.15 5.70 5.73 86.38 0.49 6.20 16 9 C 0.07 2.28 7.11 86.30 0.61 2.89 16 10 N -0.84 -25.43 9.62 -186.71 -1.80 -27.22 16 11 C 0.41 19.80 7.38 133.42 0.98 20.78 16 12 C -0.37 -16.26 9.29 22.73 0.21 -16.04 16 13 C -0.02 -0.88 10.15 22.39 0.23 -0.65 16 14 C -0.34 -17.85 9.83 22.87 0.22 -17.63 16 15 C 0.25 14.50 6.21 40.18 0.25 14.75 16 16 C -0.53 -29.92 9.04 23.46 0.21 -29.71 16 17 H 0.08 4.22 7.95 -2.91 -0.02 4.20 16 18 C 0.01 0.37 5.28 85.29 0.45 0.82 16 19 N -0.77 -41.75 13.06 21.84 0.29 -41.47 16 20 Si 1.12 44.72 30.00 68.60 2.06 46.78 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 22 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 24 N -0.61 -33.56 6.32 -186.58 -1.18 -34.74 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.06 1.38 8.13 -2.39 -0.02 1.37 16 29 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 30 H 0.15 3.02 8.07 -2.39 -0.02 3.00 16 31 H 0.14 3.35 5.96 -2.39 -0.01 3.33 16 32 H 0.07 2.59 8.07 -2.39 -0.02 2.58 16 33 H 0.05 2.26 7.29 -2.39 -0.02 2.25 16 34 H 0.00 0.07 7.98 -2.39 -0.02 0.05 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.34 11.44 8.99 -89.70 -0.81 10.63 16 37 H 0.35 8.96 9.08 -89.69 -0.81 8.15 16 38 H 0.13 4.56 6.01 -2.92 -0.02 4.54 16 39 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 40 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 41 H 0.29 16.77 6.39 -92.71 -0.59 16.17 16 Total: -1.00 -71.50 349.89 3.27 -68.24 By element: Atomic # 1 Polarization: 44.56 SS G_CDS: -0.39 Total: 44.17 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.92 Total: 0.83 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -4.16 Total: -127.96 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.17 Total: -32.05 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.06 Total: 46.78 kcal Total: -71.50 3.27 -68.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170994716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.631 kcal (2) G-P(sol) polarization free energy of solvation -71.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds