Wall clock time and date at job start Tue Mar 31 2020 03:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47259 * 2 1 4 4 C 1.34227 * 117.00603 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99586 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00435 * 179.97438 * 4 3 2 7 7 N 1.46499 * 109.46974 * 179.97438 * 6 4 3 8 8 C 1.46499 * 120.00093 * 269.99625 * 7 6 4 9 9 C 1.53001 * 109.47062 * 90.00219 * 8 7 6 10 10 N 1.46898 * 109.47234 * 180.02562 * 9 8 7 11 11 C 1.39722 * 120.00046 * 90.00177 * 7 6 4 12 12 C 1.39336 * 120.36187 * 179.72233 * 11 7 6 13 13 N 1.31991 * 121.20631 * 179.72653 * 12 11 7 14 14 C 1.31492 * 122.05619 * 0.58265 * 13 12 11 15 15 C 1.40767 * 120.56425 * 359.68195 * 14 13 12 16 16 C 1.41429 * 120.62148 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99611 * 23.49381 * 16 15 14 18 18 C 1.39924 * 119.99836 * 203.49068 * 16 15 14 19 19 N 1.30831 * 120.00365 * 17.54254 * 18 16 15 20 20 Si 1.86805 * 119.99933 * 197.54378 * 18 16 15 21 21 H 1.48497 * 109.47095 * 59.99829 * 20 18 16 22 22 H 1.48502 * 109.47095 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46850 * 299.99917 * 20 18 16 24 24 C 1.38655 * 120.36222 * 359.97438 * 11 7 6 25 25 H 1.08997 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47064 * 300.00048 * 1 2 3 27 27 H 1.08997 * 109.46883 * 60.00377 * 1 2 3 28 28 H 1.08998 * 109.47354 * 239.99554 * 2 1 3 29 29 H 1.09005 * 109.47397 * 119.99335 * 2 1 3 30 30 H 1.08995 * 109.47110 * 299.99570 * 6 4 3 31 31 H 1.08992 * 109.46931 * 59.99606 * 6 4 3 32 32 H 1.08996 * 109.47469 * 210.00432 * 8 7 6 33 33 H 1.09003 * 109.47300 * 330.00632 * 8 7 6 34 34 H 1.09006 * 109.47213 * 300.00393 * 9 8 7 35 35 H 1.08998 * 109.47407 * 59.99991 * 9 8 7 36 36 H 1.00901 * 110.99772 * 56.05235 * 10 9 8 37 37 H 1.00901 * 110.99986 * 179.97438 * 10 9 8 38 38 H 1.08002 * 119.40224 * 359.97438 * 12 11 7 39 39 H 1.07996 * 119.71952 * 179.70929 * 14 13 12 40 40 H 0.96994 * 119.99892 * 179.97438 * 19 18 16 41 41 H 1.07997 * 120.92702 * 359.95772 * 24 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9375 -0.0012 7 7 5.3837 2.8608 -0.0010 8 6 6.1152 2.8231 1.2677 9 6 6.2943 1.3695 1.7101 10 7 7.0272 1.3317 2.9827 11 6 6.0814 2.8237 -1.2110 12 6 7.4731 2.7566 -1.2197 13 7 8.1488 2.7153 -2.3529 14 6 7.5507 2.7466 -3.5235 15 6 6.1475 2.8195 -3.6087 16 6 5.5031 2.8537 -4.8672 17 1 5.9999 2.4550 -5.7393 18 6 4.2217 3.4041 -4.9823 19 7 3.7572 4.1830 -4.0394 20 14 3.1743 3.0265 -6.4823 21 1 2.9450 1.5620 -6.5700 22 1 1.8698 3.7262 -6.3640 23 1 3.8759 3.4918 -7.7056 24 6 5.3967 2.8585 -2.4162 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.5845 3.4693 -0.8912 31 1 3.5850 3.4699 0.8887 32 1 7.0931 3.2864 1.1373 33 1 5.5537 3.3674 2.0271 34 1 5.3163 0.9062 1.8406 35 1 6.8557 0.8251 0.9508 36 1 6.5591 1.8832 3.6860 37 1 7.1581 0.3817 3.2965 38 1 8.0088 2.7338 -0.2821 39 1 8.1411 2.7155 -4.4273 40 1 2.8691 4.5647 -4.1194 41 1 4.3185 2.9139 -2.4406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170995853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:38 Heat of formation + Delta-G solvation = -50.399664 kcal Electronic energy + Delta-G solvation = -24214.891042 eV Core-core repulsion = 20708.697766 eV Total energy + Delta-G solvation = -3506.193276 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.24773 -38.65224 -36.82896 -35.86246 -34.04728 -33.98018 -31.78116 -30.35982 -29.52229 -28.81073 -25.46953 -25.40215 -23.22963 -22.05112 -21.66857 -20.90546 -19.67984 -17.61879 -17.44900 -16.55947 -16.37469 -16.00627 -15.78573 -15.25042 -14.91775 -14.65046 -14.13647 -14.03983 -13.67209 -13.18995 -13.14381 -12.93810 -12.73220 -12.42130 -12.30436 -11.79981 -11.76471 -11.57914 -11.52111 -11.36686 -11.11280 -10.95841 -10.69381 -10.53312 -10.40623 -10.26601 -9.94269 -9.39681 -9.26677 -8.57230 -8.06022 -7.76452 -6.87389 -6.45554 -4.47362 2.54234 2.66510 2.81178 3.01488 3.04802 3.15506 3.25141 3.67312 3.86612 4.63300 4.82874 4.88976 4.90359 5.03024 5.19781 5.24699 5.30400 5.46540 5.64951 5.69074 5.72797 5.74916 5.81774 5.89515 6.02337 6.19933 6.41748 6.56626 6.63051 6.68673 6.85507 7.00158 7.09631 7.17783 7.46126 7.48932 7.67262 7.91235 7.94876 8.14552 8.18805 8.58350 8.73823 8.81693 9.75876 10.08350 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.006946 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.307708 B = 4030.092887 C = 6133.318394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.365 6.365 4 C 0.433 3.567 5 O -0.492 6.492 6 C 0.138 3.862 7 N -0.608 5.608 8 C 0.134 3.866 9 C 0.043 3.957 10 N -0.850 5.850 11 C 0.172 3.828 12 C -0.085 4.085 13 N -0.445 5.445 14 C -0.048 4.048 15 C 0.094 3.906 16 C -0.450 4.450 17 H 0.082 0.918 18 C 0.078 3.922 19 N -0.791 5.791 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.204 4.204 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.078 0.922 36 H 0.333 0.667 37 H 0.339 0.661 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.281 0.719 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.085 -3.204 10.212 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.273 3.727 5 O -0.377 6.377 6 C 0.011 3.989 7 N -0.323 5.323 8 C 0.010 3.990 9 C -0.089 4.089 10 N -0.379 5.379 11 C 0.074 3.926 12 C -0.244 4.244 13 N -0.151 5.151 14 C -0.212 4.212 15 C 0.089 3.911 16 C -0.480 4.480 17 H 0.100 0.900 18 C -0.141 4.141 19 N -0.416 5.416 20 Si 0.732 3.268 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.188 1.188 24 C -0.234 4.234 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.092 0.908 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.619 -3.063 10.018 12.391 hybrid contribution -2.487 -0.870 -0.327 2.655 sum -9.106 -3.933 9.690 13.867 Atomic orbital electron populations 1.21787 0.92955 1.02624 1.03416 1.22915 0.95070 0.81042 1.02235 1.86525 1.25399 1.31765 1.84501 1.25273 0.80173 0.94693 0.72563 1.90639 1.60151 1.42938 1.43983 1.20829 0.82411 0.89499 1.06158 1.45832 1.01517 1.81316 1.03614 1.21236 0.97767 0.95290 0.84699 1.22360 0.96569 0.98476 0.91488 1.58692 1.55750 1.17356 1.06100 1.18653 0.92323 0.96720 0.84876 1.21360 0.88734 1.18755 0.95507 1.66885 1.40960 1.08791 0.98510 1.22364 0.92035 1.13172 0.93675 1.18271 0.91837 0.87674 0.93317 1.19518 0.99410 1.34126 0.94978 0.90007 1.25919 0.97951 0.92422 0.97767 1.69800 1.17514 1.21177 1.33088 0.86360 0.78812 0.79875 0.81706 1.18838 1.20248 1.18791 1.21154 0.99743 1.12947 0.89556 0.90587 0.91711 0.91384 0.91377 0.91858 0.85558 0.87836 0.89482 0.92178 0.95125 0.90324 0.85578 0.84875 0.86151 0.85892 0.90779 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.36 -5.65 10.22 -39.25 -0.40 -6.05 16 4 C 0.43 7.55 7.93 36.01 0.29 7.84 16 5 O -0.49 -9.90 13.78 -18.76 -0.26 -10.15 16 6 C 0.14 2.27 5.81 -5.19 -0.03 2.24 16 7 N -0.61 -11.33 2.16 -173.06 -0.37 -11.70 16 8 C 0.13 2.10 5.48 -4.04 -0.02 2.07 16 9 C 0.04 0.67 6.38 -3.82 -0.02 0.64 16 10 N -0.85 -10.55 9.62 -10.37 -0.10 -10.65 16 11 C 0.17 4.00 6.56 -83.70 -0.55 3.45 16 12 C -0.08 -2.03 10.39 -17.07 -0.18 -2.21 16 13 N -0.44 -11.45 10.33 -12.37 -0.13 -11.57 16 14 C -0.05 -1.26 10.97 -16.74 -0.18 -1.45 16 15 C 0.09 2.52 5.59 -106.69 -0.60 1.93 16 16 C -0.45 -11.73 9.08 -37.74 -0.34 -12.07 16 17 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 18 C 0.08 1.89 5.18 -17.35 -0.09 1.80 16 19 N -0.79 -19.39 10.91 55.55 0.61 -18.79 16 20 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 C -0.20 -5.21 7.93 -38.39 -0.30 -5.51 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 29 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 30 H 0.13 2.27 6.24 -51.93 -0.32 1.95 16 31 H 0.10 1.29 7.89 -51.93 -0.41 0.88 16 32 H 0.09 1.44 6.20 -51.93 -0.32 1.12 16 33 H 0.06 0.77 7.89 -51.93 -0.41 0.36 16 34 H 0.03 0.50 6.39 -51.93 -0.33 0.17 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.33 3.39 8.99 -39.29 -0.35 3.04 16 37 H 0.34 3.74 9.08 -39.29 -0.36 3.38 16 38 H 0.12 2.65 6.13 -52.49 -0.32 2.33 16 39 H 0.12 2.99 8.06 -52.49 -0.42 2.56 16 40 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 41 H 0.13 3.22 4.38 -52.49 -0.23 2.99 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -30.25 342.01 -7.52 -37.77 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -5.57 Total: 14.12 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.42 Total: -1.29 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.00 Total: -52.71 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.66 Total: -16.21 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.25 -7.52 -37.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170995853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.625 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds