Wall clock time and date at job start Tue Mar 31 2020 03:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99673 * 2 1 4 4 H 1.48494 * 109.47271 * 269.99555 * 3 2 1 5 5 H 1.48498 * 109.47371 * 29.99830 * 3 2 1 6 6 H 1.48505 * 109.47082 * 150.00085 * 3 2 1 7 7 C 1.38805 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00093 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00269 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00106 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46953 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 N 1.46504 * 109.46883 * 180.02562 * 12 11 10 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00300 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99773 * 179.97438 * 14 13 12 17 17 H 1.08995 * 109.45991 * 59.97253 * 16 14 13 18 18 C 1.53114 * 109.45678 * 179.97438 * 16 14 13 19 19 C 1.53418 * 109.57626 * 190.08915 * 18 16 14 20 20 C 1.50597 * 108.33978 * 310.18856 * 19 18 16 21 21 N 1.32904 * 129.15929 * 196.61155 * 20 19 18 22 22 N 1.29021 * 108.63020 * 179.77276 * 21 20 19 23 23 N 1.29108 * 110.26168 * 0.02562 * 22 21 20 24 24 H 0.96999 * 126.00919 * 180.10441 * 23 22 21 25 25 C 1.34395 * 107.98406 * 0.06747 * 23 22 21 26 26 C 1.50538 * 129.25589 * 179.84884 * 25 23 22 27 27 H 0.97000 * 120.00516 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99538 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47565 * 59.99772 * 10 9 7 30 30 H 1.09001 * 109.47062 * 299.99237 * 10 9 7 31 31 H 1.09001 * 109.47502 * 60.00124 * 11 10 9 32 32 H 1.09001 * 109.47289 * 299.99920 * 11 10 9 33 33 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 34 34 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 35 35 H 0.96992 * 119.99966 * 359.97438 * 13 12 11 36 36 H 1.09004 * 109.45214 * 310.12360 * 18 16 14 37 37 H 1.09003 * 109.45230 * 70.05978 * 18 16 14 38 38 H 1.08999 * 109.69168 * 190.47514 * 19 18 16 39 39 H 1.09001 * 109.72091 * 69.92016 * 19 18 16 40 40 H 1.09002 * 109.69049 * 76.71567 * 26 25 23 41 41 H 1.09002 * 109.69032 * 316.13635 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8196 0.0012 12 6 1.8290 -6.1447 0.0005 13 7 0.8770 -7.2582 0.0005 14 6 1.3263 -8.5289 -0.0005 15 8 2.5186 -8.7505 -0.0010 16 6 0.3470 -9.6744 0.0001 17 1 -0.2808 -9.6158 -0.8890 18 6 1.1129 -11.0002 -0.0020 19 6 0.1374 -12.1570 -0.2546 20 6 -1.0263 -12.0104 0.6899 21 7 -1.9416 -12.9083 1.0397 22 7 -2.7553 -12.3620 1.8788 23 7 -2.4150 -11.1361 2.0983 24 1 -2.8677 -10.5159 2.6910 25 6 -1.3226 -10.8705 1.3617 26 6 -0.5346 -9.5925 1.2531 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.6848 -3.7145 0.8904 30 1 2.6847 -3.7145 -0.8895 31 1 0.4369 -4.7622 -0.8886 32 1 0.4376 -4.7618 0.8914 33 1 2.4549 -6.2024 -0.8900 34 1 2.4563 -6.2025 0.8900 35 1 -0.0766 -7.0810 0.0013 36 1 1.8669 -10.9826 -0.7890 37 1 1.5994 -11.1398 0.9634 38 1 0.6398 -13.1072 -0.0737 39 1 -0.2183 -12.1199 -1.2843 40 1 0.0928 -9.4716 2.1362 41 1 -1.2167 -8.7466 1.1679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171064410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:22 Heat of formation + Delta-G solvation = 20.546161 kcal Electronic energy + Delta-G solvation = -22390.550155 eV Core-core repulsion = 18919.726072 eV Total energy + Delta-G solvation = -3470.824083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.47710 -41.03287 -37.88645 -37.27086 -35.88913 -34.92168 -33.74844 -31.88324 -31.27953 -30.71370 -27.12475 -25.71116 -24.63837 -23.91578 -23.62760 -22.53978 -21.59198 -20.40653 -19.27889 -19.07606 -17.97940 -17.27585 -17.07618 -16.88622 -16.44834 -16.14511 -15.30594 -15.25965 -15.10299 -14.95058 -14.81091 -14.57620 -14.42152 -13.78267 -13.29225 -13.12794 -13.04229 -12.81506 -12.66344 -12.52194 -12.39235 -12.20305 -12.07315 -12.03684 -12.00186 -11.78484 -11.58760 -11.32448 -10.93859 -10.81620 -10.05562 -9.91561 -9.00868 -7.96614 -5.25228 0.52359 1.44593 1.48508 1.49615 1.56060 1.58157 1.86636 2.18491 2.56718 3.20548 3.37614 3.47145 3.69126 3.77184 3.81181 3.95530 3.99624 4.13796 4.25551 4.33803 4.38443 4.48493 4.50296 4.58269 4.77003 4.78185 4.81589 4.86456 4.94597 4.99857 5.14436 5.23484 5.32365 5.35496 5.36351 5.48446 5.49836 5.97281 6.26716 6.59721 7.28198 7.33289 7.39053 8.08729 8.31887 9.26828 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032181 B = 0.002236 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.859761 B =12518.823101 C =13230.408551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.248 4.248 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.150 3.850 11 C -0.118 4.118 12 C 0.132 3.868 13 N -0.715 5.715 14 C 0.520 3.480 15 O -0.578 6.578 16 C -0.093 4.093 17 H 0.128 0.872 18 C -0.096 4.096 19 C -0.029 4.029 20 C -0.032 4.032 21 N -0.295 5.295 22 N -0.119 5.119 23 N -0.364 5.364 24 H 0.465 0.535 25 C 0.002 3.998 26 C -0.034 4.034 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.021 0.979 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.416 0.584 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 -23.360 1.914 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.023 3.977 11 C -0.156 4.156 12 C 0.008 3.992 13 N -0.367 5.367 14 C 0.307 3.693 15 O -0.457 6.457 16 C -0.115 4.115 17 H 0.146 0.854 18 C -0.135 4.135 19 C -0.068 4.068 20 C -0.173 4.173 21 N -0.160 5.160 22 N -0.097 5.097 23 N -0.086 5.086 24 H 0.314 0.686 25 C -0.135 4.135 26 C -0.073 4.073 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.253 0.747 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.710 -24.654 2.205 25.029 hybrid contribution -0.043 2.325 0.242 2.338 sum -3.753 -22.329 2.447 22.774 Atomic orbital electron populations 1.69791 1.06502 1.26166 1.59428 1.25559 0.96465 1.01092 1.03631 0.85150 0.77731 0.79479 0.77473 1.21380 1.22063 1.19523 1.19638 0.91545 0.85462 1.41330 0.90771 1.42548 1.05753 1.01183 1.89520 1.20703 0.94221 0.84855 0.97901 1.21702 0.98409 0.92205 1.03331 1.21076 0.91779 0.84450 1.01933 1.45951 1.11234 1.05032 1.74495 1.20841 0.89283 0.84218 0.74983 1.90723 1.18768 1.85225 1.51024 1.21328 0.96137 0.92934 1.01074 0.85417 1.21414 0.97142 0.91070 1.03832 1.20035 0.89914 0.99867 0.96972 1.22214 1.00575 0.90398 1.04129 1.74798 1.03841 1.27573 1.09771 1.78527 1.21921 0.92611 1.16652 1.44727 1.20427 1.11381 1.32038 0.68556 1.21969 0.92633 1.00189 0.98693 1.20222 0.96765 0.91769 0.98580 0.93913 0.79195 0.96059 0.96172 0.90782 0.90509 0.92131 0.91888 0.74674 0.89722 0.91594 0.89094 0.88363 0.88253 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.74 13.06 21.65 0.28 -57.46 16 2 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.25 -13.60 9.99 84.03 0.84 -12.76 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.75 -36.46 5.60 -343.47 -1.92 -38.39 16 10 C 0.15 5.53 6.26 86.38 0.54 6.07 16 11 C -0.12 -3.03 5.44 30.60 0.17 -2.86 16 12 C 0.13 2.88 5.67 86.38 0.49 3.37 16 13 N -0.71 -10.99 5.46 -463.05 -2.53 -13.52 16 14 C 0.52 8.98 7.13 87.66 0.63 9.60 16 15 O -0.58 -15.43 15.81 -3.03 -0.05 -15.48 16 16 C -0.09 -0.94 2.50 -11.36 -0.03 -0.97 16 17 H 0.13 0.84 8.12 -2.39 -0.02 0.82 16 18 C -0.10 -1.19 4.64 30.77 0.14 -1.05 16 19 C -0.03 -0.35 6.30 29.96 0.19 -0.16 16 20 C -0.03 -0.54 7.11 41.75 0.30 -0.24 16 21 N -0.29 -6.65 12.40 -48.99 -0.61 -7.26 16 22 N -0.12 -2.39 13.40 37.02 0.50 -1.90 16 23 N -0.36 -4.29 6.97 -48.27 -0.34 -4.62 16 24 H 0.47 1.71 8.96 -219.68 -1.97 -0.26 16 25 C 0.00 0.03 7.15 41.50 0.30 0.32 16 26 C -0.03 -0.23 5.43 29.94 0.16 -0.07 16 27 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.38 19.15 7.67 -92.71 -0.71 18.44 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.42 3.82 8.14 -92.71 -0.75 3.06 16 36 H 0.08 1.17 7.76 -2.39 -0.02 1.15 16 37 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.10 0.71 8.12 -2.39 -0.02 0.69 16 41 H 0.12 0.16 7.90 -2.39 -0.02 0.14 16 Total: -1.00 -76.94 342.75 -0.81 -77.75 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -2.36 Total: 16.14 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 4.19 Total: -2.52 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -4.62 Total: -123.15 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.05 Total: -15.48 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -76.94 -0.81 -77.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171064410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.292 kcal (2) G-P(sol) polarization free energy of solvation -76.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds