Wall clock time and date at job start Tue Mar 31 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.47333 * 2 1 4 4 O 1.42902 * 109.47159 * 240.00574 * 2 1 3 5 5 C 1.35669 * 117.00561 * 89.99872 * 4 2 1 6 6 C 1.38921 * 119.68945 * 179.97438 * 5 4 2 7 7 C 1.38381 * 119.11179 * 179.74813 * 6 5 4 8 8 C 1.38822 * 118.48584 * 0.53755 * 7 6 5 9 9 C 1.38049 * 119.28823 * 359.45882 * 8 7 6 10 10 N 1.31964 * 120.83777 * 0.27970 * 9 8 7 11 11 C 1.50696 * 109.47506 * 120.00427 * 2 1 3 12 12 O 1.21280 * 120.00865 * 119.99857 * 11 2 1 13 13 N 1.34778 * 119.99558 * 300.00152 * 11 2 1 14 14 C 1.46499 * 119.99886 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.47270 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47378 * 180.02562 * 15 14 13 17 17 N 1.46508 * 109.47386 * 179.97438 * 16 15 14 18 18 C 1.36938 * 120.00008 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99950 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99741 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00276 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99998 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47205 * 89.99628 * 22 20 18 24 24 H 1.48497 * 109.47128 * 209.99881 * 22 20 18 25 25 H 1.48494 * 109.46905 * 329.99801 * 22 20 18 26 26 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47367 * 299.99941 * 1 2 3 28 28 H 1.09001 * 109.47134 * 59.99838 * 1 2 3 29 29 H 1.08000 * 120.43776 * 0.02562 * 6 5 4 30 30 H 1.08003 * 120.75366 * 180.29868 * 7 6 5 31 31 H 1.08002 * 120.35806 * 179.73977 * 8 7 6 32 32 H 1.07995 * 119.58258 * 180.25465 * 9 8 7 33 33 H 0.97006 * 120.00290 * 359.97438 * 13 11 2 34 34 H 1.09004 * 109.47624 * 299.99977 * 14 13 11 35 35 H 1.08999 * 109.47478 * 60.00241 * 14 13 11 36 36 H 1.09002 * 109.47000 * 299.99737 * 15 14 13 37 37 H 1.09003 * 109.47373 * 59.99990 * 15 14 13 38 38 H 1.09004 * 109.47438 * 299.99881 * 16 15 14 39 39 H 1.08999 * 109.47556 * 60.00079 * 16 15 14 40 40 H 0.96996 * 119.99312 * 359.97438 * 17 16 15 41 41 H 0.96993 * 119.99911 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2116 0.0830 -2.2742 6 6 2.6747 -0.5146 -3.4396 7 6 2.8749 0.2674 -4.5636 8 6 2.6143 1.6283 -4.4783 9 6 2.1560 2.1548 -3.2873 10 7 1.9694 1.3825 -2.2336 11 6 2.0323 -0.7105 1.2303 12 8 2.7296 -1.6965 1.1191 13 7 1.7067 -0.2500 2.4545 14 6 2.1946 -0.9410 3.6506 15 6 1.6842 -0.2201 4.8999 16 6 2.1943 -0.9413 6.1491 17 7 1.7060 -0.2507 7.3454 18 6 2.0374 -0.7183 8.5891 19 1 2.6583 -1.5964 8.6881 20 6 1.5743 -0.0642 9.7224 21 7 0.8171 1.0057 9.6017 22 14 2.0257 -0.7024 11.4191 23 1 3.2881 -0.0628 11.8688 24 1 0.9377 -0.3770 12.3759 25 1 2.2101 -2.1747 11.3611 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.8714 -1.5761 -3.4693 30 1 3.2296 -0.1704 -5.4850 31 1 2.7643 2.2676 -5.3358 32 1 1.9478 3.2121 -3.2169 33 1 1.1493 0.5388 2.5435 34 1 1.8310 -1.9686 3.6505 35 1 3.2846 -0.9414 3.6508 36 1 2.0476 0.8075 4.9004 37 1 0.5942 -0.2201 4.8996 38 1 1.8313 -1.9692 6.1490 39 1 3.2842 -0.9409 6.1493 40 1 1.1486 0.5381 7.2563 41 1 0.4939 1.4629 10.3937 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171383100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:11 Heat of formation + Delta-G solvation = -29.345274 kcal Electronic energy + Delta-G solvation = -22037.204914 eV Core-core repulsion = 18531.924625 eV Total energy + Delta-G solvation = -3505.280289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11775 -39.86050 -38.03971 -36.01185 -34.42239 -32.95136 -32.72446 -31.69964 -30.40621 -29.36272 -25.78112 -24.83119 -23.94235 -23.24804 -22.34652 -21.23692 -20.28941 -18.88674 -17.87145 -17.00956 -16.68721 -16.31865 -16.07904 -15.91934 -15.50407 -14.92010 -14.73284 -14.44930 -14.13218 -13.72290 -13.52579 -13.44290 -13.27612 -13.02478 -12.70303 -12.41730 -12.36207 -12.10241 -11.66777 -11.45035 -10.96911 -10.92779 -10.78985 -10.63079 -10.35219 -10.10171 -10.01283 -9.83766 -9.69222 -9.12334 -8.88465 -8.88011 -6.94066 -5.77698 -3.06677 0.76306 0.86894 2.28035 2.47932 3.30500 3.40390 3.43957 3.49079 3.50842 3.87367 4.42216 4.46505 4.58474 4.59008 4.64788 4.70876 4.81984 4.84186 5.09728 5.25185 5.29397 5.32365 5.37116 5.55836 5.56967 5.60666 5.74594 5.79438 5.95091 6.01857 6.04432 6.17398 6.30776 6.38123 6.77782 6.82053 6.85863 7.35351 7.45604 7.69865 8.07335 8.41298 9.52437 10.09314 10.44052 11.45286 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.046615 B = 0.002017 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.520036 B =13880.273793 C =14135.887783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.276 6.276 5 C 0.325 3.675 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.513 3.487 12 O -0.523 6.523 13 N -0.721 5.721 14 C 0.123 3.877 15 C -0.138 4.138 16 C 0.156 3.844 17 N -0.734 5.734 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.160 0.840 33 H 0.402 0.598 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 2.560 -30.864 30.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.133 0.867 4 O -0.181 6.181 5 C 0.146 3.854 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.236 4.236 9 C -0.015 4.015 10 N -0.267 5.267 11 C 0.297 3.703 12 O -0.398 6.398 13 N -0.374 5.374 14 C 0.000 4.000 15 C -0.176 4.176 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.177 0.823 33 H 0.237 0.763 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.573 1.776 -29.957 30.015 hybrid contribution 0.002 0.236 0.307 0.387 sum 0.575 2.013 -29.650 29.724 Atomic orbital electron populations 1.22174 0.92276 1.03796 1.03929 1.22103 0.95825 0.98062 0.82759 0.86697 1.86387 1.79776 1.34375 1.17605 1.19911 0.91059 0.87408 0.87061 1.21116 1.06074 1.02369 0.91368 1.21436 0.94022 0.93450 0.97661 1.21995 1.05318 0.96220 1.00028 1.22439 0.92516 0.99240 0.87314 1.67267 1.22008 1.04725 1.32691 1.20176 0.80849 0.84944 0.84303 1.90742 1.36956 1.25585 1.86543 1.45949 1.53849 1.32321 1.05311 1.21405 0.99569 0.96480 0.82530 1.21950 1.01574 1.00331 0.93721 1.20522 0.96507 0.94766 0.85415 1.42335 1.61541 1.33451 1.00470 1.19250 1.25631 1.08743 0.83491 0.91075 1.24758 1.00448 0.97970 0.97931 1.69660 1.39326 1.20932 1.28403 0.86157 0.77439 0.78148 0.84268 1.21694 1.21748 1.20719 0.91120 0.90101 0.90806 0.83898 0.84088 0.84506 0.82270 0.76342 0.91130 0.91186 0.91205 0.91179 0.95995 0.96022 0.78294 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.43 37.15 0.35 -1.06 16 2 C 0.07 0.80 2.91 -27.89 -0.08 0.72 16 3 H 0.12 1.16 6.98 -51.92 -0.36 0.80 16 4 O -0.28 -3.50 9.29 -38.62 -0.36 -3.86 16 5 C 0.32 3.54 7.45 -17.12 -0.13 3.41 16 6 C -0.19 -1.64 10.04 -39.28 -0.39 -2.04 16 7 C -0.04 -0.25 10.17 -39.31 -0.40 -0.65 16 8 C -0.22 -1.24 10.11 -39.43 -0.40 -1.64 16 9 C 0.14 1.00 11.18 -17.56 -0.20 0.80 16 10 N -0.54 -5.37 8.65 -13.33 -0.12 -5.48 16 11 C 0.51 6.93 7.23 -10.99 -0.08 6.85 16 12 O -0.52 -9.31 16.50 -14.35 -0.24 -9.55 16 13 N -0.72 -8.41 5.45 -60.29 -0.33 -8.73 16 14 C 0.12 1.68 5.67 -4.04 -0.02 1.66 16 15 C -0.14 -2.08 5.44 -26.73 -0.15 -2.22 16 16 C 0.16 3.11 6.26 -4.04 -0.03 3.08 16 17 N -0.73 -18.68 5.60 -59.91 -0.34 -19.01 16 18 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 19 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 22 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.54 7.56 -51.93 -0.39 0.15 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 31 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 32 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.40 3.56 7.89 -40.82 -0.32 3.24 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -35.34 354.42 -8.11 -43.45 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.01 Total: 6.49 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.77 Total: 1.43 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.05 Total: -60.83 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.60 Total: -13.41 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.34 -8.11 -43.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171383100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.105 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds