Wall clock time and date at job start Tue Mar 31 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.47333 * 2 1 4 4 O 1.42902 * 109.47159 * 240.00574 * 2 1 3 5 5 C 1.35669 * 117.00561 * 89.99872 * 4 2 1 6 6 C 1.38921 * 119.68945 * 179.97438 * 5 4 2 7 7 C 1.38381 * 119.11179 * 179.74813 * 6 5 4 8 8 C 1.38822 * 118.48584 * 0.53755 * 7 6 5 9 9 C 1.38049 * 119.28823 * 359.45882 * 8 7 6 10 10 N 1.31964 * 120.83777 * 0.27970 * 9 8 7 11 11 C 1.50696 * 109.47506 * 120.00427 * 2 1 3 12 12 O 1.21280 * 120.00865 * 119.99857 * 11 2 1 13 13 N 1.34778 * 119.99558 * 300.00152 * 11 2 1 14 14 C 1.46499 * 119.99886 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.47270 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47378 * 180.02562 * 15 14 13 17 17 N 1.46508 * 109.47386 * 179.97438 * 16 15 14 18 18 C 1.36938 * 120.00008 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99950 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99741 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00276 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99998 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47205 * 89.99628 * 22 20 18 24 24 H 1.48497 * 109.47128 * 209.99881 * 22 20 18 25 25 H 1.48494 * 109.46905 * 329.99801 * 22 20 18 26 26 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47367 * 299.99941 * 1 2 3 28 28 H 1.09001 * 109.47134 * 59.99838 * 1 2 3 29 29 H 1.08000 * 120.43776 * 0.02562 * 6 5 4 30 30 H 1.08003 * 120.75366 * 180.29868 * 7 6 5 31 31 H 1.08002 * 120.35806 * 179.73977 * 8 7 6 32 32 H 1.07995 * 119.58258 * 180.25465 * 9 8 7 33 33 H 0.97006 * 120.00290 * 359.97438 * 13 11 2 34 34 H 1.09004 * 109.47624 * 299.99977 * 14 13 11 35 35 H 1.08999 * 109.47478 * 60.00241 * 14 13 11 36 36 H 1.09002 * 109.47000 * 299.99737 * 15 14 13 37 37 H 1.09003 * 109.47373 * 59.99990 * 15 14 13 38 38 H 1.09004 * 109.47438 * 299.99881 * 16 15 14 39 39 H 1.08999 * 109.47556 * 60.00079 * 16 15 14 40 40 H 0.96996 * 119.99312 * 359.97438 * 17 16 15 41 41 H 0.96993 * 119.99911 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2116 0.0830 -2.2742 6 6 2.6747 -0.5146 -3.4396 7 6 2.8749 0.2674 -4.5636 8 6 2.6143 1.6283 -4.4783 9 6 2.1560 2.1548 -3.2873 10 7 1.9694 1.3825 -2.2336 11 6 2.0323 -0.7105 1.2303 12 8 2.7296 -1.6965 1.1191 13 7 1.7067 -0.2500 2.4545 14 6 2.1946 -0.9410 3.6506 15 6 1.6842 -0.2201 4.8999 16 6 2.1943 -0.9413 6.1491 17 7 1.7060 -0.2507 7.3454 18 6 2.0374 -0.7183 8.5891 19 1 2.6583 -1.5964 8.6881 20 6 1.5743 -0.0642 9.7224 21 7 0.8171 1.0057 9.6017 22 14 2.0257 -0.7024 11.4191 23 1 3.2881 -0.0628 11.8688 24 1 0.9377 -0.3770 12.3759 25 1 2.2101 -2.1747 11.3611 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.8714 -1.5761 -3.4693 30 1 3.2296 -0.1704 -5.4850 31 1 2.7643 2.2676 -5.3358 32 1 1.9478 3.2121 -3.2169 33 1 1.1493 0.5388 2.5435 34 1 1.8310 -1.9686 3.6505 35 1 3.2846 -0.9414 3.6508 36 1 2.0476 0.8075 4.9004 37 1 0.5942 -0.2201 4.8996 38 1 1.8313 -1.9692 6.1490 39 1 3.2842 -0.9409 6.1493 40 1 1.1486 0.5381 7.2563 41 1 0.4939 1.4629 10.3937 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171383100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:11 Heat of formation + Delta-G solvation = -55.170597 kcal Electronic energy + Delta-G solvation = -22038.324784 eV Core-core repulsion = 18531.924625 eV Total energy + Delta-G solvation = -3506.400159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84383 -40.80136 -38.84245 -37.49388 -35.98550 -34.08556 -33.45151 -33.05292 -31.30796 -30.71924 -27.20618 -25.87905 -24.73856 -24.33055 -23.52160 -22.61631 -21.37545 -19.60502 -19.25728 -18.56802 -17.51271 -17.13961 -17.00837 -16.77542 -16.56051 -16.45871 -15.71429 -15.45215 -15.34051 -15.28026 -14.72024 -14.49206 -14.30383 -14.00714 -13.79582 -13.41153 -13.32173 -12.92943 -12.82612 -12.78756 -12.60923 -12.43625 -12.22716 -12.08173 -12.05217 -11.80078 -10.97739 -10.94999 -10.87448 -10.59304 -10.22742 -9.50124 -9.02169 -7.96966 -5.26112 0.20209 0.32304 1.38118 1.46737 1.48503 1.49322 1.57975 2.42072 2.56547 2.82645 3.27714 3.36834 3.51897 3.73857 3.84340 3.96654 4.05168 4.07921 4.12126 4.23310 4.27076 4.36688 4.44127 4.65172 4.67274 4.71024 4.71324 4.80842 4.86015 5.06210 5.08377 5.22996 5.29607 5.30763 5.33463 5.48610 5.52998 6.15685 6.25889 6.40814 6.85015 7.06216 7.32386 8.06932 8.31006 9.26426 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.046615 B = 0.002017 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.520036 B =13880.273793 C =14135.887783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.079 3.921 3 H 0.123 0.877 4 O -0.304 6.304 5 C 0.292 3.708 6 C -0.206 4.206 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.127 3.873 10 N -0.560 5.560 11 C 0.512 3.488 12 O -0.572 6.572 13 N -0.706 5.706 14 C 0.133 3.867 15 C -0.118 4.118 16 C 0.151 3.849 17 N -0.746 5.746 18 C -0.250 4.250 19 H 0.075 0.925 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.271 1.271 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.143 0.857 30 H 0.173 0.827 31 H 0.171 0.829 32 H 0.187 0.813 33 H 0.418 0.582 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.376 0.624 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 3.409 -32.430 32.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 H 0.141 0.859 4 O -0.211 6.211 5 C 0.115 3.885 6 C -0.227 4.227 7 C -0.062 4.062 8 C -0.224 4.224 9 C -0.028 4.028 10 N -0.284 5.284 11 C 0.298 3.702 12 O -0.451 6.451 13 N -0.360 5.360 14 C 0.009 3.991 15 C -0.156 4.156 16 C 0.024 3.976 17 N -0.389 5.389 18 C -0.382 4.382 19 H 0.093 0.907 20 C -0.268 4.268 21 N -0.618 5.618 22 Si 0.804 3.196 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.196 1.196 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.161 0.839 30 H 0.190 0.810 31 H 0.188 0.812 32 H 0.203 0.797 33 H 0.256 0.744 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.208 0.792 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.581 2.637 -31.551 31.667 hybrid contribution 0.042 0.007 0.650 0.651 sum 0.622 2.643 -30.902 31.021 Atomic orbital electron populations 1.22152 0.90424 1.03603 1.05195 1.22095 0.97035 0.97576 0.81402 0.85904 1.86336 1.80623 1.35691 1.18449 1.20170 0.93142 0.88110 0.87115 1.21354 1.06623 1.02900 0.91776 1.21860 0.92875 0.93666 0.97827 1.22417 1.03141 0.96364 1.00486 1.23035 0.92256 1.00286 0.87265 1.67225 1.22616 1.04489 1.34114 1.20698 0.79899 0.84305 0.85279 1.90714 1.39253 1.27863 1.87254 1.45762 1.53437 1.32459 1.04335 1.21151 0.99096 0.96194 0.82634 1.21701 1.01872 1.00047 0.91968 1.20681 0.96412 0.94880 0.85600 1.42530 1.61550 1.33541 1.01322 1.19647 1.25008 1.08612 0.84910 0.90748 1.25590 1.00989 0.98532 1.01663 1.69804 1.40706 1.22224 1.29089 0.85117 0.76887 0.78046 0.79570 1.21331 1.21955 1.19559 0.92000 0.87949 0.90336 0.83931 0.80996 0.81157 0.79652 0.74414 0.91681 0.91899 0.90546 0.90359 0.95953 0.96052 0.79169 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.43 71.98 0.68 -1.87 16 2 C 0.08 1.73 2.91 29.84 0.09 1.81 16 3 H 0.12 2.44 6.98 -2.38 -0.02 2.42 16 4 O -0.30 -8.01 9.29 -70.83 -0.66 -8.66 16 5 C 0.29 6.43 7.45 84.79 0.63 7.07 16 6 C -0.21 -3.54 10.04 22.47 0.23 -3.31 16 7 C -0.04 -0.38 10.17 22.44 0.23 -0.15 16 8 C -0.20 -1.76 10.11 22.36 0.23 -1.53 16 9 C 0.13 1.54 11.18 84.63 0.95 2.49 16 10 N -0.56 -10.65 8.65 -308.95 -2.67 -13.32 16 11 C 0.51 13.89 7.23 87.66 0.63 14.52 16 12 O -0.57 -20.99 16.50 16.01 0.26 -20.72 16 13 N -0.71 -15.83 5.45 -463.06 -2.52 -18.35 16 14 C 0.13 3.55 5.67 86.38 0.49 4.04 16 15 C -0.12 -3.42 5.44 30.59 0.17 -3.26 16 16 C 0.15 5.95 6.26 86.38 0.54 6.49 16 17 N -0.75 -37.92 5.60 -343.45 -1.92 -39.84 16 18 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 19 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 21 N -0.97 -58.97 13.06 21.65 0.28 -58.69 16 22 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 1.17 7.56 -2.39 -0.02 1.15 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 31 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 32 H 0.19 1.08 8.06 -2.91 -0.02 1.05 16 33 H 0.42 6.66 7.89 -92.70 -0.73 5.93 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.38 19.91 7.67 -92.71 -0.71 19.20 16 41 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -77.17 354.42 0.56 -76.61 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.40 Total: 25.54 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 6.16 Total: 9.12 kcal Atomic # 7 Polarization: -123.36 SS G_CDS: -6.84 Total: -130.20 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.39 Total: -29.39 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -77.17 0.56 -76.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171383100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.436 kcal (2) G-P(sol) polarization free energy of solvation -77.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds