Wall clock time and date at job start Tue Mar 31 2020 02:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47207 * 2 1 4 4 C 1.35421 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32234 * 119.80378 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80257 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.18462 * 0.02562 * 6 5 4 8 8 C 1.38330 * 119.45920 * 359.97438 * 7 6 5 9 9 C 1.39990 * 118.34907 * 0.02562 * 8 7 6 10 10 C 1.47524 * 120.59541 * 180.02562 * 9 8 7 11 11 O 1.21597 * 119.99992 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00358 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00302 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47198 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46944 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.46597 * 180.02562 * 15 14 13 17 17 C 1.36946 * 119.99682 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99721 * 359.97438 * 17 16 15 19 19 C 1.38807 * 119.99608 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99553 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00449 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47178 * 90.00469 * 21 19 17 23 23 H 1.48502 * 109.47018 * 210.00595 * 21 19 17 24 24 H 1.48501 * 109.47115 * 330.00275 * 21 19 17 25 25 H 1.08998 * 109.46748 * 299.99869 * 1 2 3 26 26 H 1.08991 * 109.47057 * 59.99945 * 1 2 3 27 27 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46700 * 239.99653 * 2 1 3 29 29 H 1.09004 * 109.46858 * 120.00264 * 2 1 3 30 30 H 1.07996 * 119.40488 * 179.97438 * 6 5 4 31 31 H 1.08002 * 120.26917 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.82649 * 180.02562 * 8 7 6 33 33 H 0.97005 * 119.99727 * 359.97438 * 12 10 9 34 34 H 1.09004 * 109.47098 * 300.00153 * 13 12 10 35 35 H 1.09005 * 109.47166 * 59.99913 * 13 12 10 36 36 H 1.08990 * 109.46699 * 300.00278 * 14 13 12 37 37 H 1.09000 * 109.46895 * 60.00274 * 14 13 12 38 38 H 1.08996 * 109.47506 * 300.00440 * 15 14 13 39 39 H 1.09000 * 109.46968 * 60.00482 * 15 14 13 40 40 H 0.96999 * 120.00681 * 359.97438 * 16 15 14 41 41 H 0.97000 * 120.00008 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6002 0.0005 7 6 6.0626 1.8474 0.0011 8 6 5.2715 2.9821 0.0011 9 6 3.8806 2.8228 0.0011 10 6 2.9901 3.9989 0.0006 11 8 1.7836 3.8480 0.0010 12 7 3.5139 5.2408 -0.0005 13 6 2.6296 6.4088 -0.0016 14 6 3.4717 7.6861 -0.0032 15 6 2.5481 8.9059 -0.0050 16 7 3.3546 10.1290 -0.0072 17 6 2.7413 11.3534 -0.0086 18 1 1.6632 11.4174 -0.0085 19 6 3.5055 12.5122 -0.0112 20 7 2.9160 13.6891 -0.0130 21 14 5.3701 12.4016 -0.0122 22 1 5.8634 12.3698 -1.4125 23 1 5.9365 13.5839 0.6854 24 1 5.7929 11.1631 0.6898 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 6.0819 -0.2852 0.0009 31 1 7.1391 1.9342 0.0007 32 1 5.7157 3.9665 0.0011 33 1 4.4764 5.3612 -0.0005 34 1 2.0006 6.3875 -0.8916 35 1 2.0004 6.3890 0.8884 36 1 4.1009 7.7076 0.8865 37 1 4.1004 7.7056 -0.8934 38 1 1.9192 8.8842 -0.8950 39 1 1.9191 8.8866 0.8849 40 1 4.3229 10.0715 -0.0070 41 1 3.4499 14.4990 -0.0145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175051536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:51 Heat of formation + Delta-G solvation = -27.242263 kcal Electronic energy + Delta-G solvation = -22351.763235 eV Core-core repulsion = 18846.574139 eV Total energy + Delta-G solvation = -3505.189096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.22784 -39.28103 -38.32953 -36.15105 -34.51580 -33.20715 -32.34783 -31.88526 -30.54141 -29.79187 -25.92819 -24.89912 -23.92797 -22.62344 -22.21299 -21.32898 -20.62022 -18.96396 -17.94272 -17.35805 -17.29096 -16.63947 -15.78743 -15.68291 -15.42006 -14.81971 -14.62133 -14.37092 -14.20493 -13.95941 -13.72941 -13.32259 -12.98571 -12.81833 -12.71136 -12.67245 -12.50517 -12.01886 -11.78550 -11.20001 -11.07433 -11.04632 -10.84410 -10.71979 -10.39107 -10.38547 -10.17347 -9.80019 -9.60102 -9.15153 -8.91274 -8.85593 -7.25284 -5.77560 -3.13754 0.30208 0.82825 2.66197 2.71018 2.99765 3.35218 3.37446 3.43525 3.50159 3.84591 4.28511 4.39770 4.55029 4.57615 4.69829 4.73659 4.82759 4.90046 5.04770 5.09372 5.20521 5.37809 5.38129 5.49972 5.53029 5.58182 5.59415 5.79314 5.80863 5.92235 5.93287 5.96414 6.13732 6.37323 6.68256 6.71359 6.92719 7.29564 7.43781 7.98701 8.13993 8.41259 9.19930 9.91949 10.11392 11.40832 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.002570 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.013616 B =10892.061572 C =11951.719900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.269 6.269 4 C 0.374 3.626 5 N -0.547 5.547 6 C 0.165 3.835 7 C -0.221 4.221 8 C -0.008 4.008 9 C -0.209 4.209 10 C 0.560 3.440 11 O -0.515 6.515 12 N -0.727 5.727 13 C 0.124 3.876 14 C -0.142 4.142 15 C 0.160 3.840 16 N -0.757 5.757 17 C -0.245 4.245 18 H 0.091 0.909 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.887 3.113 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.165 0.835 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.396 0.604 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.360 0.640 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.252 -31.491 0.032 32.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.173 6.173 4 C 0.194 3.806 5 N -0.271 5.271 6 C 0.008 3.992 7 C -0.242 4.242 8 C -0.034 4.034 9 C -0.216 4.216 10 C 0.346 3.654 11 O -0.390 6.390 12 N -0.379 5.379 13 C 0.001 3.999 14 C -0.180 4.180 15 C 0.033 3.967 16 N -0.403 5.403 17 C -0.375 4.375 18 H 0.109 0.891 19 C -0.193 4.193 20 N -0.582 5.582 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.182 0.818 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.231 0.769 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.193 0.807 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.505 -32.039 0.033 32.354 hybrid contribution 2.431 0.742 0.010 2.542 sum 6.937 -31.297 0.043 32.056 Atomic orbital electron populations 1.21794 0.92679 1.02599 1.03886 1.22713 0.95340 0.81115 1.02263 1.86540 1.15438 1.29985 1.85336 1.19833 0.84774 0.88413 0.87551 1.67509 1.06650 1.32408 1.20577 1.22679 0.89172 0.97713 0.89623 1.21940 1.01819 0.92915 1.07504 1.21682 0.91194 1.00132 0.90427 1.20085 0.94279 0.92526 1.14671 1.17753 0.87808 0.82507 0.77323 1.90849 1.14121 1.85769 1.48301 1.45937 1.10463 1.05623 1.75899 1.21351 0.92701 0.82950 1.02899 1.22000 0.99417 0.94046 1.02556 1.20497 0.92918 0.84184 0.99143 1.42691 1.04162 1.02114 1.91314 1.19077 0.93538 0.81871 1.43008 0.89131 1.24698 0.97454 0.95103 1.02059 1.69708 1.34282 0.96653 1.57543 0.86507 0.87218 0.76814 0.77719 1.21083 1.21710 1.20397 0.91414 0.91407 0.90404 0.91625 0.91625 0.81831 0.83769 0.83696 0.76896 0.91005 0.91008 0.91341 0.91331 0.95107 0.95166 0.80707 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.58 6.03 37.16 0.22 0.81 16 3 O -0.27 -3.55 8.22 -39.73 -0.33 -3.88 16 4 C 0.37 4.54 7.51 -16.61 -0.12 4.41 16 5 N -0.55 -5.52 9.21 -12.98 -0.12 -5.64 16 6 C 0.17 1.14 11.17 -17.49 -0.20 0.94 16 7 C -0.22 -1.32 10.09 -39.50 -0.40 -1.72 16 8 C -0.01 -0.06 9.64 -38.89 -0.37 -0.44 16 9 C -0.21 -2.36 5.90 -104.69 -0.62 -2.98 16 10 C 0.56 7.60 7.77 -12.47 -0.10 7.51 16 11 O -0.51 -8.95 15.19 -16.49 -0.25 -9.20 16 12 N -0.73 -8.26 5.51 -61.35 -0.34 -8.60 16 13 C 0.12 1.63 5.67 -4.04 -0.02 1.60 16 14 C -0.14 -1.99 5.44 -26.73 -0.15 -2.13 16 15 C 0.16 3.03 6.26 -4.04 -0.03 3.01 16 16 N -0.76 -17.97 5.41 -59.91 -0.32 -18.30 16 17 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 16 18 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 20 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 21 Si 0.89 21.95 27.74 -169.99 -4.71 17.24 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.16 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 32 H 0.15 0.69 6.52 -52.49 -0.34 0.35 16 33 H 0.40 3.30 6.57 -40.82 -0.27 3.03 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.36 8.20 5.53 -40.82 -0.23 7.97 16 41 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -36.34 348.30 -7.62 -43.96 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.92 Total: 4.92 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -1.65 Total: 2.98 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.01 Total: -61.28 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.58 Total: -13.07 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.34 -7.62 -43.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175051536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.716 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds