Wall clock time and date at job start Tue Mar 31 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47207 * 2 1 4 4 C 1.35421 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32234 * 119.80378 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80257 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.18462 * 0.02562 * 6 5 4 8 8 C 1.38330 * 119.45920 * 359.97438 * 7 6 5 9 9 C 1.39990 * 118.34907 * 0.02562 * 8 7 6 10 10 C 1.47524 * 120.59541 * 180.02562 * 9 8 7 11 11 O 1.21597 * 119.99992 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00358 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00302 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47198 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46944 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.46597 * 180.02562 * 15 14 13 17 17 C 1.36946 * 119.99682 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99721 * 359.97438 * 17 16 15 19 19 C 1.38807 * 119.99608 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99553 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00449 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47178 * 90.00469 * 21 19 17 23 23 H 1.48502 * 109.47018 * 210.00595 * 21 19 17 24 24 H 1.48501 * 109.47115 * 330.00275 * 21 19 17 25 25 H 1.08998 * 109.46748 * 299.99869 * 1 2 3 26 26 H 1.08991 * 109.47057 * 59.99945 * 1 2 3 27 27 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46700 * 239.99653 * 2 1 3 29 29 H 1.09004 * 109.46858 * 120.00264 * 2 1 3 30 30 H 1.07996 * 119.40488 * 179.97438 * 6 5 4 31 31 H 1.08002 * 120.26917 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.82649 * 180.02562 * 8 7 6 33 33 H 0.97005 * 119.99727 * 359.97438 * 12 10 9 34 34 H 1.09004 * 109.47098 * 300.00153 * 13 12 10 35 35 H 1.09005 * 109.47166 * 59.99913 * 13 12 10 36 36 H 1.08990 * 109.46699 * 300.00278 * 14 13 12 37 37 H 1.09000 * 109.46895 * 60.00274 * 14 13 12 38 38 H 1.08996 * 109.47506 * 300.00440 * 15 14 13 39 39 H 1.09000 * 109.46968 * 60.00482 * 15 14 13 40 40 H 0.96999 * 120.00681 * 359.97438 * 16 15 14 41 41 H 0.97000 * 120.00008 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6002 0.0005 7 6 6.0626 1.8474 0.0011 8 6 5.2715 2.9821 0.0011 9 6 3.8806 2.8228 0.0011 10 6 2.9901 3.9989 0.0006 11 8 1.7836 3.8480 0.0010 12 7 3.5139 5.2408 -0.0005 13 6 2.6296 6.4088 -0.0016 14 6 3.4717 7.6861 -0.0032 15 6 2.5481 8.9059 -0.0050 16 7 3.3546 10.1290 -0.0072 17 6 2.7413 11.3534 -0.0086 18 1 1.6632 11.4174 -0.0085 19 6 3.5055 12.5122 -0.0112 20 7 2.9160 13.6891 -0.0130 21 14 5.3701 12.4016 -0.0122 22 1 5.8634 12.3698 -1.4125 23 1 5.9365 13.5839 0.6854 24 1 5.7929 11.1631 0.6898 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 6.0819 -0.2852 0.0009 31 1 7.1391 1.9342 0.0007 32 1 5.7157 3.9665 0.0011 33 1 4.4764 5.3612 -0.0005 34 1 2.0006 6.3875 -0.8916 35 1 2.0004 6.3890 0.8884 36 1 4.1009 7.7076 0.8865 37 1 4.1004 7.7056 -0.8934 38 1 1.9192 8.8842 -0.8950 39 1 1.9191 8.8866 0.8849 40 1 4.3229 10.0715 -0.0070 41 1 3.4499 14.4990 -0.0145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175051536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:50 Heat of formation + Delta-G solvation = -55.020933 kcal Electronic energy + Delta-G solvation = -22352.967808 eV Core-core repulsion = 18846.574139 eV Total energy + Delta-G solvation = -3506.393669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.95441 -40.25730 -39.04598 -37.61485 -35.98177 -34.20922 -33.51393 -33.00557 -31.72005 -30.88248 -27.32623 -25.69024 -24.92450 -23.76903 -23.30113 -22.68954 -21.66461 -19.81705 -19.55820 -18.53433 -18.04282 -17.41555 -16.88050 -16.78740 -16.44750 -15.99174 -15.78194 -15.66079 -15.17511 -14.90944 -14.82492 -14.81118 -14.14529 -13.88747 -13.75666 -13.55050 -13.34738 -13.31804 -12.87307 -12.54566 -12.53804 -12.45820 -12.09022 -12.00346 -11.80294 -11.76322 -11.23048 -11.05501 -10.97532 -10.63912 -10.16481 -9.54985 -9.31726 -8.02841 -5.38179 -0.36042 0.23186 1.38885 1.44853 1.52195 1.84445 1.97988 2.05960 2.49945 2.79190 3.24016 3.28185 3.54852 3.68543 3.76823 3.96581 4.03560 4.08234 4.11408 4.18661 4.24823 4.28949 4.38477 4.50907 4.71209 4.71308 4.79383 4.87250 4.89394 4.89893 5.07363 5.17040 5.24057 5.28918 5.37482 5.44080 5.74874 6.20610 6.22282 6.49127 6.74034 7.07523 7.19973 7.81666 8.03285 9.18704 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.002570 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.013616 B =10892.061572 C =11951.719900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.302 6.302 4 C 0.348 3.652 5 N -0.563 5.563 6 C 0.163 3.837 7 C -0.206 4.206 8 C -0.003 4.003 9 C -0.237 4.237 10 C 0.557 3.443 11 O -0.565 6.565 12 N -0.711 5.711 13 C 0.133 3.867 14 C -0.121 4.121 15 C 0.154 3.846 16 N -0.758 5.758 17 C -0.242 4.242 18 H 0.051 0.949 19 C -0.070 4.070 20 N -0.986 5.986 21 Si 0.965 3.035 22 H -0.276 1.276 23 H -0.297 1.297 24 H -0.244 1.244 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.201 0.799 31 H 0.185 0.815 32 H 0.175 0.825 33 H 0.414 0.586 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.370 0.630 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.361 -33.669 0.064 35.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.207 6.207 4 C 0.169 3.831 5 N -0.287 5.287 6 C 0.006 3.994 7 C -0.226 4.226 8 C -0.029 4.029 9 C -0.243 4.243 10 C 0.345 3.655 11 O -0.445 6.445 12 N -0.365 5.365 13 C 0.008 3.992 14 C -0.159 4.159 15 C 0.027 3.973 16 N -0.404 5.404 17 C -0.373 4.373 18 H 0.070 0.930 19 C -0.261 4.261 20 N -0.636 5.636 21 Si 0.791 3.209 22 H -0.202 1.202 23 H -0.223 1.223 24 H -0.168 1.168 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.218 0.782 31 H 0.203 0.797 32 H 0.193 0.807 33 H 0.252 0.748 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.203 0.797 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.654 -34.271 0.066 35.347 hybrid contribution 1.127 1.344 -0.005 1.754 sum 9.781 -32.927 0.061 34.349 Atomic orbital electron populations 1.21815 0.91912 1.04054 1.02752 1.22846 0.95982 0.80237 1.02544 1.86503 1.16771 1.31596 1.85842 1.20107 0.84682 0.89392 0.88968 1.67552 1.08077 1.31877 1.21223 1.23460 0.88335 0.99849 0.87733 1.22406 1.03609 0.91701 1.04852 1.22078 0.89486 1.02312 0.88975 1.20053 0.95635 0.91156 1.17469 1.18193 0.87563 0.83506 0.76234 1.90817 1.16385 1.86520 1.50785 1.45702 1.11194 1.04481 1.75091 1.21100 0.92710 0.83368 1.01984 1.21760 0.98455 0.91539 1.04174 1.20650 0.93625 0.84611 0.98430 1.42640 1.04879 1.01765 1.91116 1.19044 0.92177 0.84197 1.41905 0.93046 1.25664 1.03691 0.94444 1.02273 1.69915 1.36646 0.97650 1.59406 0.85271 0.79527 0.77870 0.78262 1.20163 1.22341 1.16782 0.92499 0.92491 0.87603 0.91248 0.91250 0.78232 0.79736 0.80750 0.74770 0.92088 0.92115 0.89714 0.89601 0.95744 0.95843 0.79669 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 10.28 71.98 0.74 -1.73 16 2 C 0.06 1.16 6.03 71.98 0.43 1.60 16 3 O -0.30 -8.40 8.22 -66.34 -0.55 -8.95 16 4 C 0.35 8.43 7.51 85.13 0.64 9.07 16 5 N -0.56 -10.62 9.21 -308.01 -2.84 -13.46 16 6 C 0.16 1.69 11.17 84.71 0.95 2.64 16 7 C -0.21 -1.52 10.09 22.32 0.23 -1.30 16 8 C 0.00 -0.03 9.64 22.72 0.22 0.19 16 9 C -0.24 -5.12 5.90 -19.91 -0.12 -5.24 16 10 C 0.56 15.06 7.77 86.69 0.67 15.74 16 11 O -0.57 -20.59 15.19 16.80 0.26 -20.33 16 12 N -0.71 -14.96 5.51 -466.26 -2.57 -17.52 16 13 C 0.13 3.33 5.67 86.38 0.49 3.82 16 14 C -0.12 -3.07 5.44 30.60 0.17 -2.90 16 15 C 0.15 5.68 6.26 86.38 0.54 6.22 16 16 N -0.76 -34.92 5.41 -343.45 -1.86 -36.78 16 17 C -0.24 -14.03 10.47 84.03 0.88 -13.15 16 18 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 20 N -0.99 -63.78 13.97 21.65 0.30 -63.48 16 21 Si 0.96 44.41 27.74 68.60 1.90 46.31 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 24 H -0.24 -9.75 6.52 99.48 0.65 -9.11 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 29 H 0.07 1.26 8.10 -2.38 -0.02 1.24 16 30 H 0.20 0.47 8.06 -2.91 -0.02 0.44 16 31 H 0.19 -0.09 8.06 -2.91 -0.02 -0.12 16 32 H 0.18 0.83 6.52 -2.91 -0.02 0.81 16 33 H 0.41 5.48 6.57 -92.70 -0.61 4.87 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.37 15.59 5.53 -92.71 -0.51 15.08 16 41 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -83.58 348.30 0.82 -82.76 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.13 Total: 20.14 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 6.30 Total: 11.30 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -6.96 Total: -131.24 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.29 Total: -29.28 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.90 Total: 46.31 kcal Total: -83.58 0.82 -82.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175051536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.736 kcal (2) G-P(sol) polarization free energy of solvation -83.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds