Wall clock time and date at job start Tue Mar 31 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48504 * 109.46922 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47005 * 299.99896 * 3 2 1 6 6 H 1.48498 * 109.47258 * 60.00006 * 3 2 1 7 7 C 1.38815 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99824 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99984 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 N 1.46506 * 109.46684 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99873 * 180.02562 * 13 12 11 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.45015 * 300.04738 * 16 14 13 18 18 C 1.53136 * 109.45393 * 180.11360 * 16 14 13 19 19 C 1.53464 * 109.30889 * 170.53621 * 18 16 14 20 20 C 1.50808 * 108.12836 * 48.71590 * 19 18 16 21 21 N 1.29833 * 128.51828 * 164.04339 * 20 19 18 22 22 N 1.28907 * 109.47615 * 180.14866 * 21 20 19 23 23 C 1.30837 * 109.74031 * 359.97332 * 22 21 20 24 24 N 1.34688 * 107.07254 * 359.97194 * 23 22 21 25 25 C 1.46252 * 128.84868 * 180.10352 * 24 23 22 26 26 H 0.97010 * 119.99657 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00485 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47175 * 59.99749 * 10 9 7 29 29 H 1.08996 * 109.47197 * 299.99991 * 10 9 7 30 30 H 1.09000 * 109.46866 * 59.99938 * 11 10 9 31 31 H 1.09001 * 109.46611 * 300.00055 * 11 10 9 32 32 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 33 33 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 34 34 H 0.96995 * 120.00050 * 359.72237 * 13 12 11 35 35 H 1.09002 * 109.50223 * 290.48574 * 18 16 14 36 36 H 1.08996 * 109.49836 * 50.58739 * 18 16 14 37 37 H 1.08999 * 109.72600 * 289.06227 * 19 18 16 38 38 H 1.08998 * 109.77700 * 168.40120 * 19 18 16 39 39 H 1.08009 * 126.46104 * 180.02562 * 23 22 21 40 40 H 1.09006 * 109.59298 * 43.16265 * 25 24 23 41 41 H 1.08993 * 109.72217 * 282.78253 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8286 -6.1447 0.0018 13 7 0.8765 -7.2582 0.0018 14 6 1.3257 -8.5289 0.0029 15 8 2.5181 -8.7506 0.0033 16 6 0.3464 -9.6743 0.0035 17 1 -0.2808 -9.6151 0.8929 18 6 1.1125 -11.0003 0.0075 19 6 0.1289 -12.1539 0.2462 20 6 -1.0369 -11.9788 -0.6943 21 7 -1.9410 -12.8473 -1.0319 22 7 -2.7656 -12.3083 -1.8632 23 6 -2.4176 -11.0674 -2.0891 24 7 -1.3149 -10.8260 -1.3543 25 6 -0.5345 -9.5936 -1.2488 26 1 -0.4850 0.8402 -0.0004 27 1 0.3554 -2.3880 0.0005 28 1 2.6846 -3.7145 0.8905 29 1 2.6845 -3.7146 -0.8894 30 1 0.4366 -4.7621 -0.8886 31 1 0.4373 -4.7617 0.8914 32 1 2.4553 -6.2021 0.8918 33 1 2.4552 -6.2030 -0.8882 34 1 -0.0771 -7.0810 0.0055 35 1 1.6076 -11.1375 -0.9539 36 1 1.8579 -10.9874 0.8026 37 1 -0.2234 -12.1295 1.2774 38 1 0.6217 -13.1057 0.0482 39 1 -2.9205 -10.3683 -2.7409 40 1 -1.2080 -8.7403 -1.1675 41 1 0.0946 -9.4799 -2.1316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176857202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:18 Heat of formation + Delta-G solvation = 43.233913 kcal Electronic energy + Delta-G solvation = -22462.311724 eV Core-core repulsion = 18992.471456 eV Total energy + Delta-G solvation = -3469.840268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.68250 -40.42312 -37.36510 -36.20264 -34.59363 -34.03777 -32.35339 -31.48042 -29.88182 -29.27145 -25.96472 -25.13828 -23.74946 -22.67891 -22.57579 -21.44191 -20.86732 -19.86742 -17.97479 -17.49241 -17.03513 -16.66392 -16.22707 -16.06892 -15.47114 -14.96934 -14.85565 -14.68090 -14.55939 -14.21754 -13.97307 -13.38165 -13.14044 -12.90398 -12.50411 -12.43906 -12.02854 -11.83051 -11.72908 -11.57602 -11.10259 -11.03006 -10.88255 -10.75063 -10.72211 -10.58179 -10.25462 -10.06887 -9.79202 -9.54716 -9.34779 -8.96690 -7.02448 -5.85342 -3.14629 1.43504 1.90270 2.23152 2.53059 2.75746 3.38095 3.44095 3.46174 3.59059 3.83468 3.90652 3.96435 4.28114 4.44604 4.47067 4.51512 4.59851 4.70974 4.90933 4.94641 5.05923 5.13684 5.23596 5.42245 5.45319 5.49205 5.49944 5.57121 5.77120 5.78734 5.89696 6.04674 6.17610 6.19677 6.41931 6.66165 6.70365 7.11950 7.63145 7.80642 8.33484 8.36592 9.44919 10.00908 10.35293 11.37642 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032549 B = 0.002251 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.025679 B =12433.766934 C =13137.706559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.121 3.879 13 N -0.724 5.724 14 C 0.520 3.480 15 O -0.528 6.528 16 C -0.124 4.124 17 H 0.112 0.888 18 C -0.107 4.107 19 C -0.035 4.035 20 C 0.177 3.823 21 N -0.292 5.292 22 N -0.301 5.301 23 C 0.157 3.843 24 N -0.473 5.473 25 C 0.113 3.887 26 H 0.255 0.745 27 H 0.383 0.617 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.221 0.779 40 H 0.105 0.895 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 -22.652 -0.828 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.003 4.003 13 N -0.376 5.376 14 C 0.304 3.696 15 O -0.403 6.403 16 C -0.146 4.146 17 H 0.130 0.870 18 C -0.146 4.146 19 C -0.074 4.074 20 C -0.090 4.090 21 N -0.132 5.132 22 N -0.140 5.140 23 C -0.131 4.131 24 N -0.164 5.164 25 C -0.010 4.010 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.235 0.765 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.237 0.763 40 H 0.123 0.877 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.629 -23.950 -0.929 24.023 hybrid contribution 0.164 2.522 -0.062 2.528 sum -1.465 -21.428 -0.991 21.501 Atomic orbital electron populations 1.69666 1.05161 1.25663 1.57777 1.24764 0.95575 0.97828 1.02876 0.86092 0.78818 0.83901 0.77239 1.20479 1.21794 1.21784 1.19281 0.91139 0.84064 1.42738 0.91012 1.42336 1.05852 0.99990 1.89652 1.20517 0.93230 0.85176 0.98274 1.21956 0.99627 0.93283 1.02766 1.21436 0.91648 0.84411 1.02768 1.46151 1.10922 1.05791 1.74695 1.20035 0.89209 0.83513 0.76866 1.90757 1.16328 1.84481 1.48758 1.21712 0.97364 0.96124 0.99373 0.86958 1.21569 0.97453 0.90185 1.05355 1.20296 0.89635 1.00761 0.96717 1.24897 1.00746 0.83360 1.00031 1.74090 1.02563 1.25134 1.11398 1.74510 1.21379 1.05127 1.12998 1.26345 0.89115 0.97695 0.99944 1.46126 1.22993 1.12518 1.34776 1.21948 0.94548 0.84896 0.99614 0.93497 0.78314 0.96028 0.96032 0.91252 0.91231 0.91056 0.91057 0.76506 0.90196 0.88259 0.88385 0.87588 0.76271 0.87720 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -17.85 5.60 -59.91 -0.34 -18.19 16 10 C 0.16 2.89 6.26 -4.04 -0.03 2.86 16 11 C -0.14 -1.82 5.44 -26.73 -0.15 -1.97 16 12 C 0.12 1.33 5.67 -4.04 -0.02 1.31 16 13 N -0.72 -5.87 5.46 -60.29 -0.33 -6.20 16 14 C 0.52 4.51 7.13 -10.99 -0.08 4.43 16 15 O -0.53 -6.75 15.83 5.55 0.09 -6.66 16 16 C -0.12 -0.68 2.54 -91.54 -0.23 -0.92 16 17 H 0.11 0.48 8.12 -51.93 -0.42 0.06 16 18 C -0.11 -0.63 4.68 -26.42 -0.12 -0.75 16 19 C -0.03 -0.20 6.34 -27.59 -0.17 -0.37 16 20 C 0.18 1.60 7.75 -155.30 -1.20 0.39 16 21 N -0.29 -3.62 12.21 32.76 0.40 -3.22 16 22 N -0.30 -3.65 12.23 29.59 0.36 -3.28 16 23 C 0.16 1.26 12.83 -90.42 -1.16 0.10 16 24 N -0.47 -3.43 3.11 -115.52 -0.36 -3.79 16 25 C 0.11 0.53 6.15 -4.01 -0.02 0.51 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.38 9.69 7.67 -40.82 -0.31 9.38 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.40 2.22 8.13 -40.82 -0.33 1.88 16 35 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 36 H 0.10 0.61 7.79 -51.93 -0.40 0.20 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.22 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.10 0.26 7.88 -51.93 -0.41 -0.15 16 41 H 0.10 0.46 8.12 -51.93 -0.42 0.03 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -36.15 343.80 -8.80 -44.96 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.07 Total: 2.82 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.44 Total: -1.67 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.46 Total: -61.57 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: 0.09 Total: -6.66 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.15 -8.80 -44.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176857202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.192 kcal (2) G-P(sol) polarization free energy of solvation -36.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds