Wall clock time and date at job start Tue Mar 31 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48504 * 109.46922 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47005 * 299.99896 * 3 2 1 6 6 H 1.48498 * 109.47258 * 60.00006 * 3 2 1 7 7 C 1.38815 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99824 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99984 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 N 1.46506 * 109.46684 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99873 * 180.02562 * 13 12 11 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.45015 * 300.04738 * 16 14 13 18 18 C 1.53136 * 109.45393 * 180.11360 * 16 14 13 19 19 C 1.53464 * 109.30889 * 170.53621 * 18 16 14 20 20 C 1.50808 * 108.12836 * 48.71590 * 19 18 16 21 21 N 1.29833 * 128.51828 * 164.04339 * 20 19 18 22 22 N 1.28907 * 109.47615 * 180.14866 * 21 20 19 23 23 C 1.30837 * 109.74031 * 359.97332 * 22 21 20 24 24 N 1.34688 * 107.07254 * 359.97194 * 23 22 21 25 25 C 1.46252 * 128.84868 * 180.10352 * 24 23 22 26 26 H 0.97010 * 119.99657 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00485 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47175 * 59.99749 * 10 9 7 29 29 H 1.08996 * 109.47197 * 299.99991 * 10 9 7 30 30 H 1.09000 * 109.46866 * 59.99938 * 11 10 9 31 31 H 1.09001 * 109.46611 * 300.00055 * 11 10 9 32 32 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 33 33 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 34 34 H 0.96995 * 120.00050 * 359.72237 * 13 12 11 35 35 H 1.09002 * 109.50223 * 290.48574 * 18 16 14 36 36 H 1.08996 * 109.49836 * 50.58739 * 18 16 14 37 37 H 1.08999 * 109.72600 * 289.06227 * 19 18 16 38 38 H 1.08998 * 109.77700 * 168.40120 * 19 18 16 39 39 H 1.08009 * 126.46104 * 180.02562 * 23 22 21 40 40 H 1.09006 * 109.59298 * 43.16265 * 25 24 23 41 41 H 1.08993 * 109.72217 * 282.78253 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8286 -6.1447 0.0018 13 7 0.8765 -7.2582 0.0018 14 6 1.3257 -8.5289 0.0029 15 8 2.5181 -8.7506 0.0033 16 6 0.3464 -9.6743 0.0035 17 1 -0.2808 -9.6151 0.8929 18 6 1.1125 -11.0003 0.0075 19 6 0.1289 -12.1539 0.2462 20 6 -1.0369 -11.9788 -0.6943 21 7 -1.9410 -12.8473 -1.0319 22 7 -2.7656 -12.3083 -1.8632 23 6 -2.4176 -11.0674 -2.0891 24 7 -1.3149 -10.8260 -1.3543 25 6 -0.5345 -9.5936 -1.2488 26 1 -0.4850 0.8402 -0.0004 27 1 0.3554 -2.3880 0.0005 28 1 2.6846 -3.7145 0.8905 29 1 2.6845 -3.7146 -0.8894 30 1 0.4366 -4.7621 -0.8886 31 1 0.4373 -4.7617 0.8914 32 1 2.4553 -6.2021 0.8918 33 1 2.4552 -6.2030 -0.8882 34 1 -0.0771 -7.0810 0.0055 35 1 1.6076 -11.1375 -0.9539 36 1 1.8579 -10.9874 0.8026 37 1 -0.2234 -12.1295 1.2774 38 1 0.6217 -13.1057 0.0482 39 1 -2.9205 -10.3683 -2.7409 40 1 -1.2080 -8.7403 -1.1675 41 1 0.0946 -9.4799 -2.1316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176857202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:18 Heat of formation + Delta-G solvation = 18.404564 kcal Electronic energy + Delta-G solvation = -22463.388405 eV Core-core repulsion = 18992.471456 eV Total energy + Delta-G solvation = -3470.916950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.31023 -41.13677 -38.03402 -37.39297 -35.96329 -34.61747 -33.81957 -32.38514 -31.12746 -30.07517 -27.15156 -25.97811 -24.78336 -23.81289 -23.30276 -22.57464 -21.70362 -20.46204 -19.20520 -18.45352 -18.02448 -17.30103 -17.11396 -16.88399 -16.43893 -16.29795 -15.61427 -15.34773 -15.29463 -15.18969 -15.15626 -14.74610 -14.58056 -13.83448 -13.32566 -13.24639 -13.01229 -12.85011 -12.67990 -12.56112 -12.40830 -12.26970 -12.05863 -12.03842 -12.03499 -11.79674 -11.38163 -11.12959 -10.99696 -10.95821 -10.22505 -10.14382 -9.01761 -7.97665 -5.26136 0.85876 1.33370 1.48061 1.48259 1.58396 1.60920 1.84167 2.05823 2.55645 3.10756 3.31539 3.36891 3.41504 3.52370 3.77847 3.84907 4.00006 4.05746 4.11446 4.16711 4.27427 4.30874 4.44633 4.48395 4.58818 4.75266 4.75787 4.76023 4.90455 4.95846 4.97776 5.08904 5.20523 5.28985 5.33622 5.39727 5.49346 5.90625 6.25836 6.47604 7.15129 7.32500 7.69748 8.07864 8.30713 9.25940 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032549 B = 0.002251 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.025679 B =12433.766934 C =13137.706559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.150 3.850 11 C -0.119 4.119 12 C 0.133 3.867 13 N -0.713 5.713 14 C 0.525 3.475 15 O -0.571 6.571 16 C -0.113 4.113 17 H 0.133 0.867 18 C -0.102 4.102 19 C -0.029 4.029 20 C 0.176 3.824 21 N -0.340 5.340 22 N -0.353 5.353 23 C 0.169 3.831 24 N -0.470 5.470 25 C 0.112 3.888 26 H 0.252 0.748 27 H 0.376 0.624 28 H 0.020 0.980 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.417 0.583 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.259 0.741 40 H 0.136 0.864 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 -22.468 -0.770 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.023 3.977 11 C -0.157 4.157 12 C 0.008 3.992 13 N -0.365 5.365 14 C 0.311 3.689 15 O -0.449 6.449 16 C -0.135 4.135 17 H 0.151 0.849 18 C -0.141 4.141 19 C -0.068 4.068 20 C -0.093 4.093 21 N -0.179 5.179 22 N -0.191 5.191 23 C -0.120 4.120 24 N -0.161 5.161 25 C -0.010 4.010 26 H 0.061 0.939 27 H 0.208 0.792 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.254 0.746 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.275 0.725 40 H 0.154 0.846 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.523 -23.796 -0.871 23.861 hybrid contribution 0.192 2.434 -0.087 2.443 sum -1.331 -21.362 -0.958 21.425 Atomic orbital electron populations 1.69800 1.06502 1.26090 1.59476 1.25558 0.96460 1.01085 1.03658 0.85093 0.78234 0.79828 0.76729 1.19161 1.21950 1.21975 1.19666 0.91542 0.85443 1.41203 0.90747 1.42552 1.05763 1.01198 1.89506 1.20707 0.94217 0.84840 0.97939 1.21708 0.98431 0.92185 1.03394 1.21104 0.91677 0.84263 1.02153 1.45960 1.11377 1.04989 1.74195 1.20445 0.89015 0.83944 0.75517 1.90751 1.18402 1.85059 1.50704 1.21631 0.96758 0.94236 1.00832 0.84912 1.21500 0.97366 0.90471 1.04739 1.20386 0.88576 1.00947 0.96886 1.25358 1.00573 0.83464 0.99919 1.73982 1.04056 1.26947 1.12878 1.74401 1.22890 1.07295 1.14540 1.27049 0.88694 0.97064 0.99152 1.46243 1.22851 1.12767 1.34192 1.22156 0.94898 0.84720 0.99200 0.93918 0.79193 0.96156 0.96010 0.90446 0.90759 0.91923 0.91646 0.74608 0.91267 0.88425 0.86777 0.87088 0.72532 0.84627 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.38 13.06 21.65 0.28 -57.09 16 2 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 44.95 29.55 68.60 2.03 46.98 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 7 C -0.25 -13.39 9.99 84.04 0.84 -12.55 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.75 -35.93 5.60 -343.45 -1.92 -37.85 16 10 C 0.15 5.37 6.26 86.38 0.54 5.91 16 11 C -0.12 -2.90 5.44 30.60 0.17 -2.73 16 12 C 0.13 2.66 5.67 86.38 0.49 3.15 16 13 N -0.71 -9.51 5.46 -463.05 -2.53 -12.03 16 14 C 0.53 7.86 7.13 87.66 0.63 8.48 16 15 O -0.57 -13.85 15.83 -3.04 -0.05 -13.90 16 16 C -0.11 -0.93 2.54 -11.39 -0.03 -0.95 16 17 H 0.13 0.64 8.12 -2.39 -0.02 0.62 16 18 C -0.10 -1.02 4.68 30.80 0.14 -0.88 16 19 C -0.03 -0.29 6.34 30.04 0.19 -0.10 16 20 C 0.18 2.95 7.75 138.14 1.07 4.02 16 21 N -0.34 -8.37 12.21 -50.27 -0.61 -8.99 16 22 N -0.35 -8.42 12.23 -60.31 -0.74 -9.16 16 23 C 0.17 2.39 12.83 180.28 2.31 4.70 16 24 N -0.47 -5.73 3.11 -519.39 -1.62 -7.35 16 25 C 0.11 0.68 6.15 86.53 0.53 1.21 16 26 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 27 H 0.38 18.90 7.67 -92.71 -0.71 18.19 16 28 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.42 3.01 8.13 -92.71 -0.75 2.26 16 35 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 36 H 0.10 1.05 7.79 -2.39 -0.02 1.03 16 37 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.26 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.14 0.03 7.88 -2.38 -0.02 0.01 16 41 H 0.10 0.62 8.12 -2.39 -0.02 0.60 16 Total: -1.00 -79.41 343.80 1.78 -77.63 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -0.41 Total: 15.25 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 7.35 Total: 6.52 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -7.14 Total: -132.47 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.05 Total: -13.90 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -79.41 1.78 -77.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176857202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.038 kcal (2) G-P(sol) polarization free energy of solvation -79.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds