Wall clock time and date at job start Tue Mar 31 2020 03:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39862 * 119.86694 * 2 1 4 4 C 1.29695 * 121.13943 * 199.45991 * 3 2 1 5 5 C 1.46732 * 119.54634 * 179.88861 * 4 3 2 6 6 O 1.21663 * 119.99977 * 179.72906 * 5 4 3 7 7 N 1.34776 * 119.99790 * 359.72497 * 5 4 3 8 8 C 1.46506 * 119.99796 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.41207 * 324.86432 * 8 7 5 10 10 C 1.52967 * 109.41122 * 84.65079 * 8 7 5 11 11 C 1.53660 * 109.32108 * 183.83281 * 10 8 7 12 12 C 1.51261 * 108.31184 * 305.13898 * 11 10 8 13 13 C 1.37885 * 120.84875 * 231.38241 * 12 11 10 14 14 N 1.31518 * 119.99792 * 180.02562 * 13 12 11 15 15 Si 1.86795 * 120.00009 * 0.28220 * 13 12 11 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 12 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 12 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 12 19 19 C 1.51272 * 118.30114 * 51.65990 * 12 11 10 20 20 C 1.52956 * 109.41407 * 205.00021 * 8 7 5 21 21 C 1.50546 * 120.90626 * 359.61266 * 4 3 2 22 22 C 1.53021 * 109.60084 * 326.07583 * 21 4 3 23 23 C 1.34754 * 119.79837 * 179.80343 * 2 1 3 24 24 O 1.21251 * 120.12007 * 359.68697 * 23 2 1 25 25 H 1.08995 * 109.47078 * 270.19499 * 1 2 3 26 26 H 1.09003 * 109.47018 * 30.19734 * 1 2 3 27 27 H 1.08994 * 109.47107 * 150.19597 * 1 2 3 28 28 H 0.96994 * 120.00445 * 0.02562 * 7 5 4 29 29 H 1.09003 * 109.47777 * 303.68173 * 10 8 7 30 30 H 1.08994 * 109.48024 * 63.70927 * 10 8 7 31 31 H 1.08998 * 109.68965 * 185.51662 * 11 10 8 32 32 H 1.09001 * 109.78288 * 64.81205 * 11 10 8 33 33 H 0.97000 * 119.99468 * 179.97438 * 14 13 12 34 34 H 1.08990 * 109.62634 * 68.11429 * 19 12 11 35 35 H 1.09002 * 109.62283 * 188.68923 * 19 12 11 36 36 H 1.09007 * 109.48092 * 56.31832 * 20 8 7 37 37 H 1.08999 * 109.49375 * 296.28780 * 20 8 7 38 38 H 1.08996 * 109.45019 * 86.11307 * 21 4 3 39 39 H 1.08998 * 109.44850 * 206.03573 * 21 4 3 40 40 H 1.09003 * 109.50913 * 167.36607 * 22 21 4 41 41 H 1.08995 * 109.50977 * 287.52445 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1615 1.2129 0.0000 4 6 3.4031 1.2732 -0.3698 5 6 4.0995 2.5648 -0.3586 6 8 5.2656 2.6301 -0.6991 7 7 3.4472 3.6787 0.0290 8 6 4.1426 4.9681 0.0407 9 1 5.1831 4.8159 0.3274 10 6 4.0872 5.5883 -1.3565 11 6 4.8984 6.8933 -1.3659 12 6 4.3717 7.7882 -0.2660 13 6 4.0163 9.0947 -0.5268 14 7 3.5608 9.8582 0.4424 15 14 4.1751 9.7780 -2.2580 16 1 2.9094 9.5469 -2.9994 17 1 4.4507 11.2357 -2.1915 18 1 5.2916 9.0947 -2.9594 19 6 4.2510 7.2151 1.1288 20 6 3.4685 5.9001 1.0489 21 6 4.1415 0.0354 -0.8046 22 6 3.6423 -1.1684 -0.0027 23 6 2.1346 -1.1694 0.0040 24 8 1.5269 -2.2185 0.0133 25 1 -0.3633 0.0035 1.0276 26 1 -0.3633 0.8882 -0.5169 27 1 -0.3633 -0.8917 -0.5108 28 1 2.5175 3.6266 0.3008 29 1 4.5118 4.8925 -2.0801 30 1 3.0508 5.7993 -1.6197 31 1 4.7832 7.3904 -2.3291 32 1 5.9512 6.6746 -1.1874 33 1 3.3111 10.7774 0.2589 34 1 5.2448 7.0258 1.5341 35 1 3.7194 7.9191 1.7690 36 1 3.4544 5.4253 2.0300 37 1 2.4466 6.1039 0.7290 38 1 3.9660 -0.1378 -1.8663 39 1 5.2091 0.1699 -0.6308 40 1 4.0050 -2.0878 -0.4624 41 1 4.0109 -1.1021 1.0209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180443413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:46 Heat of formation + Delta-G solvation = -41.646933 kcal Electronic energy + Delta-G solvation = -23569.946787 eV Core-core repulsion = 20064.133058 eV Total energy + Delta-G solvation = -3505.813729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.02800 -39.68506 -37.51495 -36.74363 -34.43596 -33.91380 -32.14967 -31.21744 -29.69375 -28.32744 -27.26369 -25.14367 -24.07087 -22.21709 -21.55392 -20.74374 -19.66325 -18.39861 -17.98383 -17.25104 -16.53938 -16.21264 -15.71656 -15.68654 -15.01823 -14.61380 -14.43511 -14.07900 -13.66689 -13.54030 -13.23002 -12.90619 -12.78611 -12.67052 -12.46697 -12.24736 -12.11263 -11.75885 -11.72041 -11.24537 -11.07214 -10.86230 -10.77928 -10.33766 -10.10854 -10.02178 -9.89061 -9.64787 -9.11838 -9.03412 -8.90894 -8.50020 -8.41209 -6.13675 -4.04477 0.67463 1.84879 2.10946 3.08358 3.15135 3.25750 3.34730 3.36778 3.66103 4.16653 4.36204 4.37646 4.60413 4.68416 4.95587 5.10186 5.13071 5.15109 5.30374 5.37687 5.40569 5.63633 5.75427 5.80156 5.83741 6.12581 6.35950 6.43715 6.64606 6.66595 6.83169 6.90098 7.04408 7.13992 7.24384 7.39679 7.51706 7.61055 7.66890 7.70201 7.82567 8.25882 8.34317 8.92837 9.51441 10.95817 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.003311 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.438281 B = 8455.700084 C = 8697.150814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.460 5.460 3 N -0.211 5.211 4 C 0.089 3.911 5 C 0.568 3.432 6 O -0.525 6.525 7 N -0.698 5.698 8 C 0.151 3.849 9 H 0.083 0.917 10 C -0.114 4.114 11 C -0.013 4.013 12 C -0.491 4.491 13 C 0.076 3.924 14 N -0.890 5.890 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.266 1.266 19 C 0.013 3.987 20 C -0.115 4.115 21 C -0.108 4.108 22 C -0.142 4.142 23 C 0.495 3.505 24 O -0.521 6.521 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.404 0.596 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.021 0.979 33 H 0.264 0.736 34 H 0.007 0.993 35 H 0.061 0.939 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 -17.853 -0.969 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.282 5.282 3 N -0.024 5.024 4 C -0.106 4.106 5 C 0.350 3.650 6 O -0.399 6.399 7 N -0.347 5.347 8 C 0.049 3.951 9 H 0.101 0.899 10 C -0.153 4.153 11 C -0.051 4.051 12 C -0.510 4.510 13 C -0.126 4.126 14 N -0.527 5.527 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.191 1.191 19 C -0.025 4.025 20 C -0.153 4.153 21 C -0.148 4.148 22 C -0.182 4.182 23 C 0.284 3.716 24 O -0.394 6.394 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.239 0.761 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.730 -17.779 -0.832 18.185 hybrid contribution -0.067 -0.125 -0.982 0.992 sum -3.796 -17.904 -1.814 18.392 Atomic orbital electron populations 1.21725 0.74878 1.04052 1.03198 1.48931 1.07500 1.01352 1.70387 1.74653 1.08741 1.07460 1.11522 1.25060 0.91961 0.97423 0.96170 1.17243 0.86199 0.82405 0.79190 1.90863 1.15437 1.85569 1.48068 1.46429 1.15932 1.07922 1.64466 1.21218 0.96777 0.79515 0.97593 0.89931 1.22004 1.00841 0.98173 0.94319 1.19792 0.95585 0.92794 0.96935 1.20051 1.42201 0.95301 0.93399 1.24844 0.94443 0.96351 0.96995 1.69832 1.43150 1.07743 1.31992 0.86659 0.78901 0.77742 0.85071 1.20437 1.21655 1.19122 1.19339 0.94714 0.91343 0.97063 1.21946 1.00438 0.97813 0.95102 1.20922 1.03371 0.89247 1.01269 1.21866 0.90849 1.01291 1.04224 1.21327 0.91426 0.83343 0.75541 1.90732 1.70399 1.30331 1.47905 0.91432 0.89666 0.89506 0.76100 0.94337 0.92849 0.94979 0.96091 0.92563 0.97471 0.92004 0.94444 0.92534 0.88118 0.86343 0.86296 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 10.73 59.85 0.64 1.52 16 2 N -0.46 -5.03 3.86 -67.07 -0.26 -5.29 16 3 N -0.21 -2.42 10.55 34.90 0.37 -2.05 16 4 C 0.09 1.03 6.78 -80.14 -0.54 0.48 16 5 C 0.57 8.31 7.73 -12.83 -0.10 8.22 16 6 O -0.53 -9.17 15.90 5.22 0.08 -9.09 16 7 N -0.70 -10.49 5.06 -55.14 -0.28 -10.77 16 8 C 0.15 2.78 2.34 -67.97 -0.16 2.62 16 9 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 10 C -0.11 -2.28 5.52 -26.40 -0.15 -2.42 16 11 C -0.01 -0.29 5.62 -27.26 -0.15 -0.45 16 12 C -0.49 -12.45 5.50 -98.92 -0.54 -12.99 16 13 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 14 N -0.89 -24.87 12.73 55.43 0.71 -24.17 16 15 Si 0.89 20.68 27.28 -169.99 -4.64 16.04 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.05 6.45 56.52 0.36 -5.69 16 19 C 0.01 0.31 5.97 -27.48 -0.16 0.15 16 20 C -0.11 -2.22 5.40 -26.64 -0.14 -2.37 16 21 C -0.11 -0.96 5.85 -27.95 -0.16 -1.13 16 22 C -0.14 -1.16 6.20 -27.84 -0.17 -1.33 16 23 C 0.50 5.57 7.55 -10.96 -0.08 5.49 16 24 O -0.52 -7.22 16.67 5.58 0.09 -7.13 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.72 7.41 -51.93 -0.39 0.34 16 28 H 0.40 5.35 7.89 -40.82 -0.32 5.03 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.73 4.77 -51.93 -0.25 0.48 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 36 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.12 1.01 7.54 -51.93 -0.39 0.62 16 40 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -30.44 333.51 -6.66 -37.10 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.93 Total: 0.61 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.83 Total: -0.29 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.54 Total: -42.27 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.18 Total: -16.21 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.64 Total: 16.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.44 -6.66 -37.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180443413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.550 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds