Wall clock time and date at job start Tue Mar 31 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39862 * 119.86694 * 2 1 4 4 C 1.29695 * 121.13943 * 199.45991 * 3 2 1 5 5 C 1.46732 * 119.54634 * 179.88861 * 4 3 2 6 6 O 1.21663 * 119.99977 * 179.72906 * 5 4 3 7 7 N 1.34776 * 119.99790 * 359.72497 * 5 4 3 8 8 C 1.46506 * 119.99796 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.41207 * 324.86432 * 8 7 5 10 10 C 1.52967 * 109.41122 * 84.65079 * 8 7 5 11 11 C 1.53660 * 109.32108 * 183.83281 * 10 8 7 12 12 C 1.51261 * 108.31184 * 305.13898 * 11 10 8 13 13 C 1.37885 * 120.84875 * 231.38241 * 12 11 10 14 14 N 1.31518 * 119.99792 * 180.02562 * 13 12 11 15 15 Si 1.86795 * 120.00009 * 0.28220 * 13 12 11 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 12 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 12 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 12 19 19 C 1.51272 * 118.30114 * 51.65990 * 12 11 10 20 20 C 1.52956 * 109.41407 * 205.00021 * 8 7 5 21 21 C 1.50546 * 120.90626 * 359.61266 * 4 3 2 22 22 C 1.53021 * 109.60084 * 326.07583 * 21 4 3 23 23 C 1.34754 * 119.79837 * 179.80343 * 2 1 3 24 24 O 1.21251 * 120.12007 * 359.68697 * 23 2 1 25 25 H 1.08995 * 109.47078 * 270.19499 * 1 2 3 26 26 H 1.09003 * 109.47018 * 30.19734 * 1 2 3 27 27 H 1.08994 * 109.47107 * 150.19597 * 1 2 3 28 28 H 0.96994 * 120.00445 * 0.02562 * 7 5 4 29 29 H 1.09003 * 109.47777 * 303.68173 * 10 8 7 30 30 H 1.08994 * 109.48024 * 63.70927 * 10 8 7 31 31 H 1.08998 * 109.68965 * 185.51662 * 11 10 8 32 32 H 1.09001 * 109.78288 * 64.81205 * 11 10 8 33 33 H 0.97000 * 119.99468 * 179.97438 * 14 13 12 34 34 H 1.08990 * 109.62634 * 68.11429 * 19 12 11 35 35 H 1.09002 * 109.62283 * 188.68923 * 19 12 11 36 36 H 1.09007 * 109.48092 * 56.31832 * 20 8 7 37 37 H 1.08999 * 109.49375 * 296.28780 * 20 8 7 38 38 H 1.08996 * 109.45019 * 86.11307 * 21 4 3 39 39 H 1.08998 * 109.44850 * 206.03573 * 21 4 3 40 40 H 1.09003 * 109.50913 * 167.36607 * 22 21 4 41 41 H 1.08995 * 109.50977 * 287.52445 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1615 1.2129 0.0000 4 6 3.4031 1.2732 -0.3698 5 6 4.0995 2.5648 -0.3586 6 8 5.2656 2.6301 -0.6991 7 7 3.4472 3.6787 0.0290 8 6 4.1426 4.9681 0.0407 9 1 5.1831 4.8159 0.3274 10 6 4.0872 5.5883 -1.3565 11 6 4.8984 6.8933 -1.3659 12 6 4.3717 7.7882 -0.2660 13 6 4.0163 9.0947 -0.5268 14 7 3.5608 9.8582 0.4424 15 14 4.1751 9.7780 -2.2580 16 1 2.9094 9.5469 -2.9994 17 1 4.4507 11.2357 -2.1915 18 1 5.2916 9.0947 -2.9594 19 6 4.2510 7.2151 1.1288 20 6 3.4685 5.9001 1.0489 21 6 4.1415 0.0354 -0.8046 22 6 3.6423 -1.1684 -0.0027 23 6 2.1346 -1.1694 0.0040 24 8 1.5269 -2.2185 0.0133 25 1 -0.3633 0.0035 1.0276 26 1 -0.3633 0.8882 -0.5169 27 1 -0.3633 -0.8917 -0.5108 28 1 2.5175 3.6266 0.3008 29 1 4.5118 4.8925 -2.0801 30 1 3.0508 5.7993 -1.6197 31 1 4.7832 7.3904 -2.3291 32 1 5.9512 6.6746 -1.1874 33 1 3.3111 10.7774 0.2589 34 1 5.2448 7.0258 1.5341 35 1 3.7194 7.9191 1.7690 36 1 3.4544 5.4253 2.0300 37 1 2.4466 6.1039 0.7290 38 1 3.9660 -0.1378 -1.8663 39 1 5.2091 0.1699 -0.6308 40 1 4.0050 -2.0878 -0.4624 41 1 4.0109 -1.1021 1.0209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180443413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:45 Heat of formation + Delta-G solvation = -62.223997 kcal Electronic energy + Delta-G solvation = -23570.839076 eV Core-core repulsion = 20064.133058 eV Total energy + Delta-G solvation = -3506.706018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92108 -40.87715 -38.70425 -38.09060 -35.46387 -35.21648 -33.60312 -32.42057 -31.43011 -29.40946 -28.64359 -26.00224 -25.09929 -23.73861 -23.26436 -21.94153 -21.26538 -19.56840 -18.82427 -18.11567 -17.91967 -17.35788 -17.02823 -16.74171 -16.39598 -16.08380 -15.47386 -15.35549 -14.94850 -14.55526 -14.42493 -14.27868 -14.09990 -13.91553 -13.64188 -13.45828 -13.37569 -13.14770 -12.75788 -12.67083 -12.56327 -12.52155 -12.06476 -11.88301 -11.79559 -11.49590 -11.31981 -10.92611 -10.78330 -10.63709 -10.51261 -10.03282 -9.81028 -8.14785 -6.08410 -0.26833 1.01772 1.24831 1.40229 1.44745 1.52645 1.98682 2.05516 2.43457 2.81531 3.14112 3.45057 3.52027 3.85854 4.00052 4.07054 4.17574 4.22638 4.46815 4.48221 4.52211 4.70695 4.73598 4.75273 4.76715 4.86194 4.97422 4.98998 5.07611 5.10133 5.11771 5.25519 5.27219 5.57220 5.60191 5.68888 5.78815 5.85620 6.33535 6.37673 6.51105 6.75380 6.97825 7.08317 7.49829 8.95824 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.003311 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.438281 B = 8455.700084 C = 8697.150814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.463 5.463 3 N -0.211 5.211 4 C 0.088 3.912 5 C 0.573 3.427 6 O -0.552 6.552 7 N -0.693 5.693 8 C 0.164 3.836 9 H 0.069 0.931 10 C -0.108 4.108 11 C -0.016 4.016 12 C -0.499 4.499 13 C 0.024 3.976 14 N -0.929 5.929 15 Si 0.938 3.062 16 H -0.272 1.272 17 H -0.294 1.294 18 H -0.257 1.257 19 C 0.008 3.992 20 C -0.102 4.102 21 C -0.103 4.103 22 C -0.135 4.135 23 C 0.490 3.510 24 O -0.551 6.551 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.415 0.585 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.018 0.982 33 H 0.263 0.737 34 H 0.001 0.999 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.140 0.860 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 -19.785 -1.839 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.284 5.284 3 N -0.024 5.024 4 C -0.106 4.106 5 C 0.356 3.644 6 O -0.428 6.428 7 N -0.343 5.343 8 C 0.060 3.940 9 H 0.087 0.913 10 C -0.146 4.146 11 C -0.054 4.054 12 C -0.518 4.518 13 C -0.174 4.174 14 N -0.569 5.569 15 Si 0.764 3.236 16 H -0.198 1.198 17 H -0.221 1.221 18 H -0.181 1.181 19 C -0.029 4.029 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.174 4.174 23 C 0.280 3.720 24 O -0.427 6.427 25 H 0.094 0.906 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.252 0.748 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.019 0.981 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.143 0.857 40 H 0.158 0.842 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.892 -19.730 -1.708 20.183 hybrid contribution -0.024 0.447 -0.648 0.787 sum -3.916 -19.283 -2.356 19.817 Atomic orbital electron populations 1.21904 0.73842 1.04698 1.03997 1.49122 1.08258 1.01117 1.69876 1.74597 1.08789 1.07940 1.11101 1.24782 0.92218 0.96781 0.96808 1.17510 0.85832 0.83008 0.78026 1.90856 1.16739 1.86143 1.49067 1.46158 1.16328 1.06967 1.64897 1.20788 0.96215 0.80734 0.96220 0.91313 1.21879 1.00341 0.96865 0.95557 1.19803 0.95758 0.93863 0.95965 1.20628 1.40791 0.95639 0.94747 1.25559 0.94876 0.96956 1.00004 1.69959 1.45229 1.07976 1.33750 0.85850 0.79276 0.76870 0.81568 1.19798 1.22069 1.18095 1.19299 0.94641 0.93024 0.95985 1.21711 0.99518 0.95979 0.96831 1.20976 1.03318 0.88034 1.01963 1.21925 0.88526 1.01844 1.05151 1.21880 0.92663 0.82849 0.74637 1.90722 1.71277 1.31246 1.49410 0.90606 0.88435 0.89457 0.74833 0.93402 0.92643 0.94945 0.96389 0.92824 0.98079 0.94907 0.92222 0.92579 0.86973 0.85686 0.84212 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.46 10.73 127.77 1.37 2.83 16 2 N -0.46 -9.07 3.86 -484.52 -1.87 -10.94 16 3 N -0.21 -4.31 10.55 -43.50 -0.46 -4.77 16 4 C 0.09 1.81 6.78 45.05 0.31 2.12 16 5 C 0.57 15.47 7.73 86.46 0.67 16.13 16 6 O -0.55 -18.20 15.90 -4.23 -0.07 -18.26 16 7 N -0.69 -19.28 5.06 -446.59 -2.26 -21.54 16 8 C 0.16 5.77 2.34 44.96 0.11 5.87 16 9 H 0.07 2.65 7.58 -2.39 -0.02 2.63 16 10 C -0.11 -4.09 5.52 30.81 0.17 -3.92 16 11 C -0.02 -0.70 5.62 30.25 0.17 -0.53 16 12 C -0.50 -25.34 5.50 -16.17 -0.09 -25.43 16 13 C 0.02 1.31 5.46 84.66 0.46 1.77 16 14 N -0.93 -53.14 12.73 21.45 0.27 -52.87 16 15 Si 0.94 42.35 27.28 68.60 1.87 44.22 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.26 -11.05 6.45 99.48 0.64 -10.41 16 19 C 0.01 0.41 5.97 30.11 0.18 0.59 16 20 C -0.10 -3.84 5.40 30.66 0.17 -3.68 16 21 C -0.10 -1.53 5.85 29.81 0.17 -1.35 16 22 C -0.13 -1.80 6.20 29.88 0.19 -1.61 16 23 C 0.49 9.94 7.55 87.68 0.66 10.60 16 24 O -0.55 -14.41 16.67 -2.94 -0.05 -14.46 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 1.33 7.41 -2.39 -0.02 1.32 16 28 H 0.41 9.93 7.89 -92.71 -0.73 9.20 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.03 1.42 4.77 -2.39 -0.01 1.41 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.03 1.73 7.07 -2.39 -0.02 1.72 16 36 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.12 1.76 7.54 -2.39 -0.02 1.74 16 40 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -65.27 333.51 2.23 -63.04 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.26 Total: 12.19 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 4.53 Total: 3.38 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -4.32 Total: -90.11 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.12 Total: -32.73 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.87 Total: 44.22 kcal Total: -65.27 2.23 -63.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180443413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.818 kcal (2) G-P(sol) polarization free energy of solvation -65.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds