Wall clock time and date at job start Tue Mar 31 2020 02:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47631 * 2 1 4 4 C 1.50706 * 109.47352 * 119.99959 * 2 1 3 5 5 O 1.21281 * 120.00263 * 97.40372 * 4 2 1 6 6 N 1.34773 * 119.99955 * 277.41049 * 4 2 1 7 7 C 1.46505 * 119.99834 * 5.63178 * 6 4 2 8 8 C 1.50697 * 109.46801 * 94.02529 * 7 6 4 9 9 H 1.08006 * 120.00354 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00152 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99988 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99545 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47141 * 90.00115 * 12 10 8 14 14 H 1.48505 * 109.47080 * 209.99909 * 12 10 8 15 15 H 1.48497 * 109.47399 * 330.00157 * 12 10 8 16 16 C 1.46496 * 120.00033 * 185.64108 * 6 4 2 17 17 C 1.52997 * 109.47458 * 84.67854 * 16 6 4 18 18 C 1.47200 * 109.47082 * 183.13827 * 17 16 6 19 19 N 6.93727 * 123.12416 * 108.01903 * 2 1 3 20 20 N 1.46499 * 109.47086 * 239.99736 * 2 1 3 21 21 C 1.46766 * 124.35052 * 119.72640 * 20 2 1 22 22 C 1.54659 * 105.38508 * 162.85484 * 21 20 2 23 23 C 1.54633 * 101.68371 * 25.76545 * 22 21 20 24 24 C 1.34414 * 124.35147 * 300.02625 * 20 2 1 25 25 O 1.21283 * 124.94283 * 0.38907 * 24 20 2 26 26 H 1.09004 * 109.47227 * 293.84884 * 1 2 3 27 27 H 1.08997 * 109.47469 * 53.84311 * 1 2 3 28 28 H 1.08996 * 109.47580 * 173.84765 * 1 2 3 29 29 H 1.09005 * 109.46789 * 214.01707 * 7 6 4 30 30 H 1.08997 * 109.47310 * 334.02206 * 7 6 4 31 31 H 0.97004 * 119.99645 * 179.97438 * 11 10 8 32 32 H 1.09001 * 109.47044 * 204.68190 * 16 6 4 33 33 H 1.08999 * 109.46970 * 324.67515 * 16 6 4 34 34 H 1.09003 * 109.46505 * 303.13247 * 17 16 6 35 35 H 1.08994 * 109.47441 * 63.13703 * 17 16 6 36 36 H 1.08993 * 110.24516 * 281.98663 * 21 20 2 37 37 H 1.09002 * 110.24296 * 43.98433 * 21 20 2 38 38 H 1.09001 * 111.19101 * 267.59879 * 22 21 20 39 39 H 1.08997 * 110.82497 * 143.77500 * 22 21 20 40 40 H 1.08993 * 110.48775 * 216.30626 * 23 22 21 41 41 H 1.09000 * 110.59644 * 93.71657 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3621 -1.8757 1.1658 6 7 2.1150 -0.0508 2.4029 7 6 1.6023 1.3173 2.5114 8 6 0.1836 1.2832 3.0186 9 1 -0.2890 0.3371 3.2378 10 6 -0.5111 2.4599 3.2029 11 7 -1.7493 2.4300 3.6450 12 14 0.3065 4.0962 2.8244 13 1 0.0543 4.4594 1.4067 14 1 -0.2543 5.1467 3.7117 15 1 1.7693 3.9835 3.0538 16 6 2.7179 -0.7017 3.5686 17 6 4.2370 -0.5257 3.5224 18 6 4.8487 -1.2434 4.6526 19 7 5.3208 -1.7972 5.5249 20 7 2.0182 -0.6907 -1.1961 21 6 2.8608 -0.0697 -2.2250 22 6 3.4725 -1.2469 -3.0199 23 6 2.4200 -2.3572 -2.7948 24 6 1.7475 -1.9728 -1.4953 25 8 1.0639 -2.7139 -0.8212 26 1 -0.3634 0.4155 0.9399 27 1 -0.3634 0.6063 -0.8297 28 1 -0.3634 -1.0217 -0.1101 29 1 2.2228 1.8839 3.2057 30 1 1.6263 1.7932 1.5310 31 1 -2.2379 3.2579 3.7750 32 1 2.3272 -0.2490 4.4800 33 1 2.4747 -1.7642 3.5577 34 1 4.6210 -0.9289 2.5853 35 1 4.4821 0.5342 3.5895 36 1 2.2559 0.5573 -2.8799 37 1 3.6504 0.5207 -1.7601 38 1 4.4400 -1.5379 -2.6110 39 1 3.5566 -0.9980 -4.0778 40 1 2.9047 -3.3289 -2.7007 41 1 1.6961 -2.3703 -3.6095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181293245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:06 Heat of formation + Delta-G solvation = -33.139459 kcal Electronic energy + Delta-G solvation = -24449.490105 eV Core-core repulsion = 20944.045288 eV Total energy + Delta-G solvation = -3505.444817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.51302 -38.97086 -36.69578 -36.01570 -35.28750 -33.83186 -32.76105 -31.30442 -29.17966 -27.91212 -27.41898 -24.96173 -23.13512 -22.61896 -21.86536 -19.79671 -18.01080 -17.57339 -17.07033 -16.70118 -16.57046 -16.27058 -15.23766 -14.91772 -14.65620 -14.31496 -14.09240 -13.70602 -13.51118 -13.29350 -13.14981 -13.02800 -12.74998 -12.66384 -12.40912 -12.34767 -11.95714 -11.81966 -11.62732 -11.54721 -11.27829 -11.20502 -11.06754 -10.96524 -10.81466 -10.64849 -10.38475 -9.69969 -9.44067 -9.17431 -8.80798 -8.34080 -7.93891 -6.29911 -4.32177 2.74271 2.89974 2.94487 3.09071 3.13972 3.15689 3.19660 3.24938 3.70943 4.17300 4.30949 4.45278 4.46666 4.75872 4.97925 5.02479 5.09008 5.24668 5.28138 5.32215 5.42608 5.45262 5.57567 5.60577 5.69933 5.77433 5.91636 5.98712 6.22485 6.24699 6.29452 6.30894 6.50062 6.81069 6.99729 7.16074 7.32743 7.46100 7.66113 7.95493 8.29705 8.56390 8.75209 8.83302 9.27629 10.82099 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010489 B = 0.006701 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.879838 B = 4177.405977 C = 5914.594068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.147 3.853 3 H 0.107 0.893 4 C 0.508 3.492 5 O -0.533 6.533 6 N -0.592 5.592 7 C 0.205 3.795 8 C -0.544 4.544 9 H 0.082 0.918 10 C 0.079 3.921 11 N -0.885 5.885 12 Si 0.868 3.132 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.263 1.263 16 C 0.128 3.872 17 C -0.044 4.044 18 C 0.220 3.780 19 N -0.447 5.447 20 N -0.614 5.614 21 C 0.104 3.896 22 C -0.130 4.130 23 C -0.155 4.155 24 C 0.520 3.480 25 O -0.503 6.503 26 H 0.116 0.884 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.268 0.732 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.464 0.710 -13.361 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.042 3.958 3 H 0.125 0.875 4 C 0.294 3.706 5 O -0.410 6.410 6 N -0.324 5.324 7 C 0.084 3.916 8 C -0.582 4.582 9 H 0.100 0.900 10 C -0.126 4.126 11 N -0.521 5.521 12 Si 0.694 3.306 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.188 1.188 16 C 0.002 3.998 17 C -0.086 4.086 18 C -0.098 4.098 19 N -0.125 5.125 20 N -0.351 5.351 21 C -0.019 4.019 22 C -0.168 4.168 23 C -0.196 4.196 24 C 0.307 3.693 25 O -0.376 6.376 26 H 0.134 0.866 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.770 -0.984 -11.603 15.862 hybrid contribution 0.076 1.463 -0.477 1.541 sum 10.847 0.479 -12.080 16.242 Atomic orbital electron populations 1.22321 0.91397 1.03620 1.05818 1.20844 0.97080 0.95582 0.82339 0.87528 1.20724 0.77897 0.87005 0.84935 1.90695 1.49305 1.15672 1.85295 1.47841 1.58728 1.17005 1.08849 1.19942 0.95977 0.78169 0.97541 1.21334 0.95830 0.95401 1.45614 0.89971 1.24885 0.94604 0.98830 0.94259 1.69887 1.09875 1.28105 1.44258 0.86982 0.80352 0.84235 0.79004 1.19776 1.20874 1.18758 1.21098 0.88434 1.00030 0.90198 1.19763 0.96986 0.99961 0.91859 1.29056 0.93271 0.93330 0.94139 1.81184 1.09804 1.10074 1.11399 1.48161 1.52411 1.12591 1.21900 1.22081 0.93985 0.95891 0.89992 1.22589 0.98686 0.94571 1.00921 1.22322 0.99320 1.00653 0.97290 1.20639 0.80687 0.81495 0.86484 1.90733 1.38396 1.54014 1.54425 0.86591 0.92504 0.91417 0.94563 0.95038 0.92219 0.88827 0.89978 0.87521 0.87259 0.91128 0.90677 0.90145 0.89533 0.88501 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 9.19 37.15 0.34 -2.83 16 2 C 0.15 2.43 2.47 -69.08 -0.17 2.26 16 3 H 0.11 1.52 6.29 -51.93 -0.33 1.20 16 4 C 0.51 9.58 6.79 -10.98 -0.07 9.51 16 5 O -0.53 -11.53 13.69 -16.11 -0.22 -11.76 16 6 N -0.59 -10.57 2.47 -175.06 -0.43 -11.01 16 7 C 0.20 3.88 3.86 -5.19 -0.02 3.86 16 8 C -0.54 -12.92 7.68 -34.44 -0.26 -13.18 16 9 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 10 C 0.08 1.96 5.47 -17.82 -0.10 1.86 16 11 N -0.88 -24.24 13.96 55.43 0.77 -23.46 16 12 Si 0.87 17.98 27.47 -169.99 -4.67 13.32 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.26 -5.01 6.54 56.52 0.37 -4.64 16 16 C 0.13 2.02 5.38 -4.05 -0.02 2.00 16 17 C -0.04 -0.55 5.99 -29.52 -0.18 -0.72 16 18 C 0.22 3.13 15.43 -20.76 -0.32 2.81 16 19 N -0.45 -7.45 18.54 42.15 0.78 -6.67 16 20 N -0.61 -8.94 2.77 -166.05 -0.46 -9.40 16 21 C 0.10 0.98 7.31 -3.02 -0.02 0.96 16 22 C -0.13 -1.01 7.19 -25.00 -0.18 -1.19 16 23 C -0.16 -1.66 6.86 -26.74 -0.18 -1.84 16 24 C 0.52 8.51 6.75 -10.86 -0.07 8.44 16 25 O -0.50 -10.76 14.62 -16.11 -0.24 -11.00 16 26 H 0.12 2.43 5.30 -51.93 -0.28 2.16 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.38 6.59 -51.93 -0.34 1.03 16 29 H 0.04 0.66 7.16 -51.93 -0.37 0.29 16 30 H 0.03 0.56 5.16 -51.93 -0.27 0.29 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.09 1.48 8.03 -51.93 -0.42 1.06 16 33 H 0.08 1.43 7.51 -51.93 -0.39 1.03 16 34 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -32.89 340.30 -6.38 -39.27 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.79 Total: 3.64 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -1.26 Total: 11.93 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.66 Total: -50.53 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.46 Total: -22.75 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -4.67 Total: 13.32 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.89 -6.38 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181293245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.130 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds