Wall clock time and date at job start Tue Mar 31 2020 02:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47631 * 2 1 4 4 C 1.50706 * 109.47352 * 119.99959 * 2 1 3 5 5 O 1.21281 * 120.00263 * 97.40372 * 4 2 1 6 6 N 1.34773 * 119.99955 * 277.41049 * 4 2 1 7 7 C 1.46505 * 119.99834 * 5.63178 * 6 4 2 8 8 C 1.50697 * 109.46801 * 94.02529 * 7 6 4 9 9 H 1.08006 * 120.00354 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00152 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99988 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99545 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47141 * 90.00115 * 12 10 8 14 14 H 1.48505 * 109.47080 * 209.99909 * 12 10 8 15 15 H 1.48497 * 109.47399 * 330.00157 * 12 10 8 16 16 C 1.46496 * 120.00033 * 185.64108 * 6 4 2 17 17 C 1.52997 * 109.47458 * 84.67854 * 16 6 4 18 18 C 1.47200 * 109.47082 * 183.13827 * 17 16 6 19 19 N 6.93727 * 123.12416 * 108.01903 * 2 1 3 20 20 N 1.46499 * 109.47086 * 239.99736 * 2 1 3 21 21 C 1.46766 * 124.35052 * 119.72640 * 20 2 1 22 22 C 1.54659 * 105.38508 * 162.85484 * 21 20 2 23 23 C 1.54633 * 101.68371 * 25.76545 * 22 21 20 24 24 C 1.34414 * 124.35147 * 300.02625 * 20 2 1 25 25 O 1.21283 * 124.94283 * 0.38907 * 24 20 2 26 26 H 1.09004 * 109.47227 * 293.84884 * 1 2 3 27 27 H 1.08997 * 109.47469 * 53.84311 * 1 2 3 28 28 H 1.08996 * 109.47580 * 173.84765 * 1 2 3 29 29 H 1.09005 * 109.46789 * 214.01707 * 7 6 4 30 30 H 1.08997 * 109.47310 * 334.02206 * 7 6 4 31 31 H 0.97004 * 119.99645 * 179.97438 * 11 10 8 32 32 H 1.09001 * 109.47044 * 204.68190 * 16 6 4 33 33 H 1.08999 * 109.46970 * 324.67515 * 16 6 4 34 34 H 1.09003 * 109.46505 * 303.13247 * 17 16 6 35 35 H 1.08994 * 109.47441 * 63.13703 * 17 16 6 36 36 H 1.08993 * 110.24516 * 281.98663 * 21 20 2 37 37 H 1.09002 * 110.24296 * 43.98433 * 21 20 2 38 38 H 1.09001 * 111.19101 * 267.59879 * 22 21 20 39 39 H 1.08997 * 110.82497 * 143.77500 * 22 21 20 40 40 H 1.08993 * 110.48775 * 216.30626 * 23 22 21 41 41 H 1.09000 * 110.59644 * 93.71657 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3621 -1.8757 1.1658 6 7 2.1150 -0.0508 2.4029 7 6 1.6023 1.3173 2.5114 8 6 0.1836 1.2832 3.0186 9 1 -0.2890 0.3371 3.2378 10 6 -0.5111 2.4599 3.2029 11 7 -1.7493 2.4300 3.6450 12 14 0.3065 4.0962 2.8244 13 1 0.0543 4.4594 1.4067 14 1 -0.2543 5.1467 3.7117 15 1 1.7693 3.9835 3.0538 16 6 2.7179 -0.7017 3.5686 17 6 4.2370 -0.5257 3.5224 18 6 4.8487 -1.2434 4.6526 19 7 5.3208 -1.7972 5.5249 20 7 2.0182 -0.6907 -1.1961 21 6 2.8608 -0.0697 -2.2250 22 6 3.4725 -1.2469 -3.0199 23 6 2.4200 -2.3572 -2.7948 24 6 1.7475 -1.9728 -1.4953 25 8 1.0639 -2.7139 -0.8212 26 1 -0.3634 0.4155 0.9399 27 1 -0.3634 0.6063 -0.8297 28 1 -0.3634 -1.0217 -0.1101 29 1 2.2228 1.8839 3.2057 30 1 1.6263 1.7932 1.5310 31 1 -2.2379 3.2579 3.7750 32 1 2.3272 -0.2490 4.4800 33 1 2.4747 -1.7642 3.5577 34 1 4.6210 -0.9289 2.5853 35 1 4.4821 0.5342 3.5895 36 1 2.2559 0.5573 -2.8799 37 1 3.6504 0.5207 -1.7601 38 1 4.4400 -1.5379 -2.6110 39 1 3.5566 -0.9980 -4.0778 40 1 2.9047 -3.3289 -2.7007 41 1 1.6961 -2.3703 -3.6095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181293245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:06 Heat of formation + Delta-G solvation = -54.592578 kcal Electronic energy + Delta-G solvation = -24450.420382 eV Core-core repulsion = 20944.045288 eV Total energy + Delta-G solvation = -3506.375094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74204 -40.28936 -37.94347 -37.22138 -36.80143 -35.07234 -34.48796 -32.59692 -30.32858 -29.60029 -28.29228 -26.32767 -24.61159 -24.13502 -22.64151 -21.04530 -19.39711 -19.03529 -18.52803 -18.07931 -17.80518 -17.29358 -16.51218 -16.27027 -15.99430 -15.69778 -15.47766 -14.88910 -14.72070 -14.57308 -14.41636 -14.28047 -14.01618 -13.82512 -13.64064 -13.54253 -13.36187 -13.15431 -13.07315 -12.71848 -12.64762 -12.58491 -12.33894 -12.16196 -11.95876 -11.84504 -11.74125 -11.57473 -10.81200 -10.69947 -10.43871 -9.56866 -9.43666 -8.19819 -6.27167 1.50111 1.50588 1.54077 1.61685 1.73872 1.75526 1.77354 2.04637 2.44258 2.44904 3.14036 3.15770 3.52747 3.69646 3.75312 4.03874 4.08195 4.12150 4.16208 4.25262 4.35605 4.50996 4.72591 4.76042 4.78702 4.80221 4.86876 4.88143 4.93604 4.96091 5.04154 5.17160 5.32775 5.41388 5.52370 5.62952 5.75885 6.24065 6.36443 6.52036 6.62438 6.79437 7.25713 7.38096 7.46711 8.96541 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010489 B = 0.006701 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.879838 B = 4177.405977 C = 5914.594068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.141 0.859 4 C 0.502 3.498 5 O -0.566 6.566 6 N -0.591 5.591 7 C 0.210 3.790 8 C -0.535 4.535 9 H 0.023 0.977 10 C 0.017 3.983 11 N -0.947 5.947 12 Si 0.938 3.062 13 H -0.258 1.258 14 H -0.298 1.298 15 H -0.221 1.221 16 C 0.123 3.877 17 C -0.025 4.025 18 C 0.243 3.757 19 N -0.491 5.491 20 N -0.615 5.615 21 C 0.094 3.906 22 C -0.115 4.115 23 C -0.149 4.149 24 C 0.499 3.501 25 O -0.572 6.572 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.266 0.734 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.117 0.883 35 H 0.147 0.853 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.858 3.571 -16.176 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.158 0.842 4 C 0.289 3.711 5 O -0.444 6.444 6 N -0.322 5.322 7 C 0.089 3.911 8 C -0.574 4.574 9 H 0.041 0.959 10 C -0.182 4.182 11 N -0.587 5.587 12 Si 0.760 3.240 13 H -0.182 1.182 14 H -0.225 1.225 15 H -0.144 1.144 16 C -0.002 4.002 17 C -0.066 4.066 18 C -0.075 4.075 19 N -0.169 5.169 20 N -0.349 5.349 21 C -0.027 4.027 22 C -0.153 4.153 23 C -0.189 4.189 24 C 0.288 3.712 25 O -0.450 6.450 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.165 0.835 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.143 0.857 40 H 0.115 0.885 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.232 1.893 -14.452 20.372 hybrid contribution -1.097 0.454 0.414 1.258 sum 13.135 2.347 -14.038 19.368 Atomic orbital electron populations 1.22128 0.93349 1.01665 1.04976 1.20790 0.95474 0.97164 0.82473 0.84173 1.21253 0.77274 0.86715 0.85864 1.90685 1.50762 1.17104 1.85899 1.47863 1.58439 1.16806 1.09106 1.19894 0.93042 0.79035 0.99165 1.21468 0.98229 0.92984 1.44711 0.95874 1.25856 0.94901 1.03445 0.93994 1.70091 1.12391 1.29100 1.47111 0.85867 0.81318 0.77756 0.79052 1.18201 1.22469 1.14366 1.21122 0.91114 0.98385 0.89562 1.19703 0.93577 1.01970 0.91378 1.29310 0.92245 0.92269 0.93639 1.81210 1.11291 1.11543 1.12867 1.48353 1.52344 1.12376 1.21864 1.22530 0.94249 0.96735 0.89207 1.22650 0.97425 0.92198 1.02989 1.22356 1.00254 1.01838 0.94445 1.21764 0.79928 0.81686 0.87805 1.90690 1.41414 1.55912 1.56975 0.89783 0.90011 0.94707 0.91836 0.92276 0.92553 0.89127 0.92600 0.86469 0.83495 0.88756 0.88566 0.89722 0.85750 0.88521 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.03 9.19 71.98 0.66 -5.37 16 2 C 0.15 4.63 2.47 44.24 0.11 4.74 16 3 H 0.14 3.39 6.29 -2.39 -0.01 3.38 16 4 C 0.50 18.73 6.79 87.66 0.60 19.33 16 5 O -0.57 -25.04 13.69 17.68 0.24 -24.80 16 6 N -0.59 -20.51 2.47 -826.16 -2.04 -22.55 16 7 C 0.21 7.42 3.86 85.63 0.33 7.75 16 8 C -0.54 -25.87 7.68 25.60 0.20 -25.68 16 9 H 0.02 1.36 8.06 -2.91 -0.02 1.33 16 10 C 0.02 0.83 5.47 84.66 0.46 1.29 16 11 N -0.95 -54.09 13.96 21.45 0.30 -53.80 16 12 Si 0.94 35.17 27.47 68.60 1.88 37.05 16 13 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 14 H -0.30 -11.90 7.11 99.48 0.71 -11.20 16 15 H -0.22 -6.80 6.54 99.48 0.65 -6.15 16 16 C 0.12 3.85 5.38 86.38 0.46 4.32 16 17 C -0.03 -0.56 5.99 28.79 0.17 -0.39 16 18 C 0.24 6.55 15.43 89.44 1.38 7.93 16 19 N -0.49 -16.06 18.54 20.01 0.37 -15.69 16 20 N -0.61 -16.53 2.77 -797.85 -2.21 -18.75 16 21 C 0.09 1.32 7.31 86.89 0.64 1.95 16 22 C -0.12 -1.24 7.19 31.72 0.23 -1.01 16 23 C -0.15 -2.82 6.86 30.59 0.21 -2.61 16 24 C 0.50 16.14 6.75 87.90 0.59 16.73 16 25 O -0.57 -25.72 14.62 17.68 0.26 -25.46 16 26 H 0.08 3.66 5.30 -2.39 -0.01 3.65 16 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.03 1.49 6.59 -2.39 -0.02 1.47 16 29 H 0.06 1.98 7.16 -2.38 -0.02 1.96 16 30 H 0.06 1.82 5.16 -2.39 -0.01 1.81 16 31 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.09 2.85 8.03 -2.39 -0.02 2.83 16 33 H 0.06 2.03 7.51 -2.39 -0.02 2.01 16 34 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -80.55 340.30 5.83 -74.71 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.99 Total: 20.29 kcal Atomic # 6 Polarization: 22.95 SS G_CDS: 6.04 Total: 28.99 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -3.58 Total: -110.78 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: 0.50 Total: -50.26 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 1.88 Total: 37.05 kcal Total: -80.55 5.83 -74.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181293245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.121 kcal (2) G-P(sol) polarization free energy of solvation -80.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds