Wall clock time and date at job start Tue Mar 31 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99636 * 2 1 4 4 H 1.48502 * 109.46777 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47129 * 300.00143 * 3 2 1 6 6 H 1.48503 * 109.47270 * 60.00263 * 3 2 1 7 7 C 1.38808 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99961 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99827 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.88719 * 37.42863 * 10 9 7 12 12 C 1.55163 * 111.00554 * 273.54465 * 10 9 7 13 13 C 1.54322 * 102.94051 * 206.38692 * 12 10 9 14 14 N 1.47026 * 107.27502 * 22.19404 * 13 12 10 15 15 C 1.34774 * 125.64649 * 181.01855 * 14 13 12 16 16 O 1.21281 * 119.99864 * 180.02562 * 15 14 13 17 17 C 1.50692 * 120.00572 * 0.02875 * 15 14 13 18 18 C 1.52995 * 109.47498 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.47336 * 179.97438 * 18 17 15 20 20 N 1.46499 * 109.47396 * 179.97438 * 19 18 17 21 21 C 1.35308 * 125.86944 * 124.99861 * 20 19 18 22 22 C 1.35347 * 106.17713 * 180.02562 * 21 20 19 23 23 N 1.33774 * 106.49812 * 0.02562 * 22 21 20 24 24 N 1.28637 * 108.88333 * 0.02562 * 23 22 21 25 25 C 1.47424 * 108.70005 * 1.28561 * 14 13 12 26 26 H 0.97003 * 120.00289 * 359.97438 * 1 2 3 27 27 H 0.96994 * 119.99863 * 0.02562 * 9 7 2 28 28 H 1.09005 * 110.71729 * 88.02683 * 12 10 9 29 29 H 1.08997 * 110.71896 * 324.75231 * 12 10 9 30 30 H 1.09002 * 109.88368 * 262.77578 * 13 12 10 31 31 H 1.09005 * 110.01051 * 141.68370 * 13 12 10 32 32 H 1.09000 * 109.47272 * 59.99094 * 17 15 14 33 33 H 1.09002 * 109.47244 * 299.99970 * 17 15 14 34 34 H 1.09001 * 109.46800 * 59.99998 * 18 17 15 35 35 H 1.08993 * 109.47308 * 299.99766 * 18 17 15 36 36 H 1.09001 * 109.46828 * 60.00444 * 19 18 17 37 37 H 1.08993 * 109.47081 * 300.00334 * 19 18 17 38 38 H 1.07997 * 126.91159 * 0.02959 * 21 20 19 39 39 H 1.08002 * 126.75518 * 179.97438 * 22 21 20 40 40 H 1.08998 * 110.36522 * 94.48255 * 25 14 13 41 41 H 1.08999 * 110.36743 * 216.80520 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6566 0.0005 11 1 2.9529 -3.5888 0.6195 12 6 2.4139 -4.0935 -1.4452 13 6 2.5184 -5.6286 -1.3265 14 7 1.7464 -6.0284 -0.1409 15 6 1.6064 -7.2882 0.3171 16 8 0.9426 -7.5025 1.3093 17 6 2.2747 -8.4306 -0.4033 18 6 1.9590 -9.7427 0.3175 19 6 2.6371 -10.9027 -0.4145 20 7 2.3353 -12.1590 0.2761 21 6 1.7821 -13.2590 -0.2850 22 6 1.6813 -14.1769 0.7046 23 7 2.1707 -13.6008 1.8083 24 7 2.5490 -12.4053 1.5213 25 6 1.1455 -4.8238 0.4602 26 1 -0.4851 0.8400 0.0004 27 1 0.3557 -2.3880 -0.0002 28 1 3.3673 -3.6648 -1.7541 29 1 1.6210 -3.8134 -2.1388 30 1 3.5615 -5.9209 -1.2055 31 1 2.1022 -6.1008 -2.2165 32 1 3.3531 -8.2725 -0.4137 33 1 1.9050 -8.4803 -1.4275 34 1 0.8806 -9.9010 0.3281 35 1 2.3291 -9.6929 1.3414 36 1 3.7155 -10.7446 -0.4254 37 1 2.2667 -10.9524 -1.4383 38 1 1.4816 -13.3803 -1.3152 39 1 1.2831 -15.1772 0.6201 40 1 0.1297 -4.6822 0.0912 41 1 1.1477 -4.9010 1.5475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183193026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:35 Heat of formation + Delta-G solvation = 76.013081 kcal Electronic energy + Delta-G solvation = -22398.122803 eV Core-core repulsion = 18929.703947 eV Total energy + Delta-G solvation = -3468.418857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.50653 -39.97632 -37.56966 -36.09065 -34.21096 -32.94059 -31.55328 -31.30743 -29.63712 -28.65659 -27.20094 -24.25045 -23.29831 -22.94670 -22.49169 -21.39237 -20.16646 -19.16745 -17.96612 -17.38277 -17.03625 -16.67573 -16.25921 -15.63243 -15.30112 -15.02534 -14.62748 -14.40378 -14.03375 -13.64450 -13.29046 -13.10743 -12.85364 -12.62968 -12.47791 -12.17556 -12.00253 -11.89091 -11.67919 -11.36374 -11.22143 -11.13934 -10.90992 -10.75156 -10.42190 -10.37137 -10.09265 -9.86690 -9.76779 -9.68740 -9.02257 -8.51287 -7.10770 -5.87687 -3.18675 1.30437 1.99195 2.31824 2.64612 3.03161 3.37010 3.42886 3.45163 3.94975 4.16818 4.24081 4.45110 4.49701 4.67984 4.71141 4.77469 4.83222 4.91799 4.95703 5.12785 5.20926 5.28167 5.35125 5.50001 5.52257 5.59658 5.68588 5.80946 5.89466 5.89532 6.07272 6.16014 6.24462 6.29460 6.46251 6.53220 6.83874 7.60620 7.62631 8.19493 8.23831 8.29622 9.41337 9.94930 10.29625 11.34486 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.056101 B = 0.002185 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.977695 B =12810.982235 C =12983.113400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.156 4.156 13 C 0.101 3.899 14 N -0.613 5.613 15 C 0.524 3.476 16 O -0.544 6.544 17 C -0.132 4.132 18 C -0.118 4.118 19 C 0.114 3.886 20 N -0.288 5.288 21 C -0.053 4.053 22 C -0.055 4.055 23 N -0.275 5.275 24 N -0.079 5.079 25 C 0.098 3.902 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.190 0.810 39 H 0.189 0.811 40 H 0.069 0.931 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.862 -23.845 -7.933 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.197 4.197 13 C -0.022 4.022 14 N -0.347 5.347 15 C 0.313 3.687 16 O -0.421 6.421 17 C -0.173 4.173 18 C -0.157 4.157 19 C -0.007 4.007 20 N -0.082 5.082 21 C -0.204 4.204 22 C -0.212 4.212 23 N -0.140 5.140 24 N -0.059 5.059 25 C -0.025 4.025 26 H 0.066 0.934 27 H 0.221 0.779 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.207 0.793 39 H 0.206 0.794 40 H 0.087 0.913 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.163 -23.291 -6.032 24.836 hybrid contribution -0.295 0.619 -1.436 1.591 sum 5.868 -22.672 -7.468 24.581 Atomic orbital electron populations 1.69671 1.05168 1.25836 1.57022 1.24787 0.95549 0.97875 1.02485 0.86093 0.78776 0.83876 0.77250 1.20467 1.21790 1.21748 1.19246 0.91082 0.83740 1.43505 0.90897 1.42266 1.05844 0.99351 1.88114 1.21342 0.94180 0.85644 0.92850 0.91861 1.23425 1.02898 0.91229 1.02154 1.22119 0.95181 0.97712 0.87230 1.48484 1.50795 1.06304 1.29164 1.20071 0.81338 0.82630 0.84703 1.90736 1.41331 1.83711 1.26363 1.21506 1.02552 0.92643 1.00559 1.21613 1.02228 0.90814 1.01058 1.22224 1.02973 0.79441 0.96048 1.47546 1.39718 1.12825 1.08135 1.23720 1.06137 0.88086 1.02422 1.23651 1.06070 1.02134 0.89337 1.75154 1.13462 1.00277 1.25148 1.78360 1.19725 1.11905 0.95932 1.22589 0.97475 0.83531 0.98878 0.93359 0.77929 0.90658 0.90509 0.91821 0.92019 0.88364 0.88581 0.90137 0.88993 0.87954 0.87404 0.79283 0.79414 0.91294 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.47 9.98 -15.06 -0.15 -6.62 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -16.98 5.28 -51.23 -0.27 -17.25 16 10 C 0.17 3.17 3.70 -65.66 -0.24 2.93 16 11 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 12 C -0.16 -2.34 6.64 -24.89 -0.17 -2.50 16 13 C 0.10 1.14 6.48 -3.06 -0.02 1.12 16 14 N -0.61 -8.58 3.32 -170.38 -0.57 -9.15 16 15 C 0.52 7.15 7.85 -10.99 -0.09 7.06 16 16 O -0.54 -9.79 16.24 5.56 0.09 -9.70 16 17 C -0.13 -1.03 4.89 -27.89 -0.14 -1.17 16 18 C -0.12 -0.99 4.63 -26.73 -0.12 -1.12 16 19 C 0.11 0.61 6.46 -4.04 -0.03 0.58 16 20 N -0.29 -2.49 3.44 -61.26 -0.21 -2.70 16 21 C -0.05 -0.35 11.57 -17.05 -0.20 -0.55 16 22 C -0.05 -0.46 12.05 -17.74 -0.21 -0.67 16 23 N -0.27 -3.46 12.41 30.24 0.38 -3.09 16 24 N -0.08 -0.99 12.91 60.35 0.78 -0.21 16 25 C 0.10 1.68 6.53 -2.41 -0.02 1.66 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.39 9.83 7.71 -40.82 -0.31 9.51 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 0.22 8.07 -51.93 -0.42 -0.20 16 38 H 0.19 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.19 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.07 1.22 8.01 -51.93 -0.42 0.81 16 41 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -35.29 349.20 -6.49 -41.79 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.18 Total: 4.59 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.47 Total: 0.35 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.83 Total: -58.92 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.29 -6.49 -41.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183193026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.800 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds