Wall clock time and date at job start Tue Mar 31 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99636 * 2 1 4 4 H 1.48502 * 109.46777 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47129 * 300.00143 * 3 2 1 6 6 H 1.48503 * 109.47270 * 60.00263 * 3 2 1 7 7 C 1.38808 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99961 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99827 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.88719 * 37.42863 * 10 9 7 12 12 C 1.55163 * 111.00554 * 273.54465 * 10 9 7 13 13 C 1.54322 * 102.94051 * 206.38692 * 12 10 9 14 14 N 1.47026 * 107.27502 * 22.19404 * 13 12 10 15 15 C 1.34774 * 125.64649 * 181.01855 * 14 13 12 16 16 O 1.21281 * 119.99864 * 180.02562 * 15 14 13 17 17 C 1.50692 * 120.00572 * 0.02875 * 15 14 13 18 18 C 1.52995 * 109.47498 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.47336 * 179.97438 * 18 17 15 20 20 N 1.46499 * 109.47396 * 179.97438 * 19 18 17 21 21 C 1.35308 * 125.86944 * 124.99861 * 20 19 18 22 22 C 1.35347 * 106.17713 * 180.02562 * 21 20 19 23 23 N 1.33774 * 106.49812 * 0.02562 * 22 21 20 24 24 N 1.28637 * 108.88333 * 0.02562 * 23 22 21 25 25 C 1.47424 * 108.70005 * 1.28561 * 14 13 12 26 26 H 0.97003 * 120.00289 * 359.97438 * 1 2 3 27 27 H 0.96994 * 119.99863 * 0.02562 * 9 7 2 28 28 H 1.09005 * 110.71729 * 88.02683 * 12 10 9 29 29 H 1.08997 * 110.71896 * 324.75231 * 12 10 9 30 30 H 1.09002 * 109.88368 * 262.77578 * 13 12 10 31 31 H 1.09005 * 110.01051 * 141.68370 * 13 12 10 32 32 H 1.09000 * 109.47272 * 59.99094 * 17 15 14 33 33 H 1.09002 * 109.47244 * 299.99970 * 17 15 14 34 34 H 1.09001 * 109.46800 * 59.99998 * 18 17 15 35 35 H 1.08993 * 109.47308 * 299.99766 * 18 17 15 36 36 H 1.09001 * 109.46828 * 60.00444 * 19 18 17 37 37 H 1.08993 * 109.47081 * 300.00334 * 19 18 17 38 38 H 1.07997 * 126.91159 * 0.02959 * 21 20 19 39 39 H 1.08002 * 126.75518 * 179.97438 * 22 21 20 40 40 H 1.08998 * 110.36522 * 94.48255 * 25 14 13 41 41 H 1.08999 * 110.36743 * 216.80520 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6566 0.0005 11 1 2.9529 -3.5888 0.6195 12 6 2.4139 -4.0935 -1.4452 13 6 2.5184 -5.6286 -1.3265 14 7 1.7464 -6.0284 -0.1409 15 6 1.6064 -7.2882 0.3171 16 8 0.9426 -7.5025 1.3093 17 6 2.2747 -8.4306 -0.4033 18 6 1.9590 -9.7427 0.3175 19 6 2.6371 -10.9027 -0.4145 20 7 2.3353 -12.1590 0.2761 21 6 1.7821 -13.2590 -0.2850 22 6 1.6813 -14.1769 0.7046 23 7 2.1707 -13.6008 1.8083 24 7 2.5490 -12.4053 1.5213 25 6 1.1455 -4.8238 0.4602 26 1 -0.4851 0.8400 0.0004 27 1 0.3557 -2.3880 -0.0002 28 1 3.3673 -3.6648 -1.7541 29 1 1.6210 -3.8134 -2.1388 30 1 3.5615 -5.9209 -1.2055 31 1 2.1022 -6.1008 -2.2165 32 1 3.3531 -8.2725 -0.4137 33 1 1.9050 -8.4803 -1.4275 34 1 0.8806 -9.9010 0.3281 35 1 2.3291 -9.6929 1.3414 36 1 3.7155 -10.7446 -0.4254 37 1 2.2667 -10.9524 -1.4383 38 1 1.4816 -13.3803 -1.3152 39 1 1.2831 -15.1772 0.6201 40 1 0.1297 -4.6822 0.0912 41 1 1.1477 -4.9010 1.5475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183193026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:35 Heat of formation + Delta-G solvation = 49.565198 kcal Electronic energy + Delta-G solvation = -22399.269670 eV Core-core repulsion = 18929.703947 eV Total energy + Delta-G solvation = -3469.565723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.12449 -41.10076 -38.81560 -36.74921 -35.93804 -33.77197 -33.16644 -31.90885 -31.03032 -29.77882 -28.21682 -25.75684 -24.57321 -23.71487 -23.29560 -22.00439 -21.60939 -20.17126 -19.29247 -18.66340 -17.90541 -17.55827 -17.23207 -16.62282 -16.42448 -15.99285 -15.67949 -15.50195 -15.20672 -14.84837 -14.62525 -14.43935 -13.81452 -13.59383 -13.40885 -13.11782 -13.10236 -13.03130 -12.85427 -12.66685 -12.53711 -12.31471 -12.10066 -11.99585 -11.76031 -11.74762 -11.59295 -11.08067 -10.96620 -10.92660 -10.29128 -9.66728 -9.06026 -7.96612 -5.26882 0.72819 1.48271 1.49385 1.52632 1.59106 1.62018 1.67481 1.99211 2.56180 3.32795 3.41642 3.60651 3.73456 3.75913 3.86331 3.87479 4.02685 4.21474 4.24583 4.26843 4.36125 4.37435 4.38475 4.44429 4.51509 4.61004 4.75202 4.80212 4.87825 4.99253 5.04884 5.16227 5.25180 5.28029 5.33353 5.44029 5.54001 5.75277 6.24365 6.57053 7.13886 7.30867 7.58012 8.02781 8.26182 9.26969 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.056101 B = 0.002185 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.977695 B =12810.982235 C =12983.113400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.298 1.298 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.731 5.731 10 C 0.163 3.837 11 H 0.059 0.941 12 C -0.146 4.146 13 C 0.107 3.893 14 N -0.614 5.614 15 C 0.515 3.485 16 O -0.600 6.600 17 C -0.116 4.116 18 C -0.113 4.113 19 C 0.113 3.887 20 N -0.289 5.289 21 C -0.032 4.032 22 C -0.073 4.073 23 N -0.323 5.323 24 N -0.134 5.134 25 C 0.106 3.894 26 H 0.251 0.749 27 H 0.373 0.627 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.139 0.861 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.122 0.878 37 H 0.157 0.843 38 H 0.241 0.759 39 H 0.215 0.785 40 H 0.055 0.945 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.992 -25.579 -11.371 29.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.220 1.220 6 H -0.226 1.226 7 C -0.369 4.369 8 H 0.100 0.900 9 N -0.371 5.371 10 C 0.053 3.947 11 H 0.077 0.923 12 C -0.187 4.187 13 C -0.014 4.014 14 N -0.348 5.348 15 C 0.306 3.694 16 O -0.482 6.482 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.006 4.006 20 N -0.083 5.083 21 C -0.183 4.183 22 C -0.231 4.231 23 N -0.188 5.188 24 N -0.113 5.113 25 C -0.019 4.019 26 H 0.060 0.940 27 H 0.205 0.795 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.174 0.826 38 H 0.257 0.743 39 H 0.231 0.769 40 H 0.073 0.927 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.374 -25.058 -9.486 28.071 hybrid contribution -0.982 1.063 -0.374 1.495 sum 7.391 -23.994 -9.859 26.974 Atomic orbital electron populations 1.69830 1.06737 1.26057 1.59467 1.25602 0.96360 1.01255 1.03696 0.85060 0.78419 0.79723 0.76456 1.18619 1.22036 1.22570 1.19642 0.91604 0.84695 1.40964 0.89986 1.42440 1.05441 1.00697 1.88525 1.21519 0.93601 0.84018 0.95516 0.92298 1.23211 1.02742 0.94356 0.98372 1.22285 0.97157 0.94712 0.87263 1.48593 1.50836 1.05544 1.29792 1.21274 0.80528 0.83414 0.84187 1.90720 1.43887 1.84461 1.29097 1.21561 1.03832 0.88904 1.01275 1.21460 1.00918 0.92960 0.99824 1.22528 1.04062 0.76861 0.97144 1.47864 1.38890 1.14147 1.07384 1.24506 1.03422 0.86459 1.03936 1.24298 1.06124 1.03804 0.88909 1.75070 1.15019 1.01069 1.27598 1.78294 1.22363 1.12383 0.98250 1.22217 0.96897 0.85095 0.97661 0.94040 0.79491 0.89609 0.91965 0.88184 0.88323 0.85043 0.84330 0.92516 0.92884 0.86015 0.82563 0.74305 0.76855 0.92711 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.54 13.06 21.65 0.28 -58.26 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 6 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.24 -12.60 9.98 84.03 0.84 -11.76 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.73 -35.43 5.28 -316.01 -1.67 -37.10 16 10 C 0.16 6.00 3.70 46.47 0.17 6.17 16 11 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 12 C -0.15 -4.03 6.64 31.78 0.21 -3.82 16 13 C 0.11 1.95 6.48 86.73 0.56 2.51 16 14 N -0.61 -15.98 3.32 -811.35 -2.70 -18.68 16 15 C 0.51 13.22 7.85 87.66 0.69 13.91 16 16 O -0.60 -22.26 16.24 -3.03 -0.05 -22.31 16 17 C -0.12 -1.31 4.89 29.84 0.15 -1.16 16 18 C -0.11 -1.67 4.63 30.59 0.14 -1.53 16 19 C 0.11 0.74 6.46 86.38 0.56 1.30 16 20 N -0.29 -4.34 3.44 -347.74 -1.20 -5.54 16 21 C -0.03 -0.31 11.57 83.49 0.97 0.65 16 22 C -0.07 -1.13 12.05 83.73 1.01 -0.12 16 23 N -0.32 -8.29 12.41 -58.26 -0.72 -9.01 16 24 N -0.13 -3.37 12.91 37.02 0.48 -2.89 16 25 C 0.11 3.68 6.53 86.93 0.57 4.25 16 26 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.37 19.78 7.71 -92.71 -0.72 19.06 16 28 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.14 0.50 8.14 -2.39 -0.02 0.49 16 34 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.05 1.20 8.07 -2.39 -0.02 1.18 16 36 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.16 -0.45 8.07 -2.39 -0.02 -0.47 16 38 H 0.24 -0.36 8.06 -2.91 -0.02 -0.38 16 39 H 0.21 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.05 2.04 8.01 -2.39 -0.02 2.02 16 41 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 Total: -1.00 -85.53 349.20 3.10 -82.43 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.31 Total: 17.88 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 6.33 Total: 6.57 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -5.52 Total: -131.49 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -85.53 3.10 -82.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183193026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.996 kcal (2) G-P(sol) polarization free energy of solvation -85.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds